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Bug 1689 - allow exporting of connectivity networks to a common file format
| Status | NEW |
| Reported | 2012-09-02 22:41:00 +0200 |
| Modified | 2016-02-24 09:51:22 +0100 |
| Product: | FieldTrip |
| Component: | fileio |
| Version: | unspecified |
| Hardware: | PC |
| Operating System: | Linux |
| Importance: | P3 normal |
| Assigned to: | Giorgos Michalareas |
| URL: | |
| Tags: | |
| Depends on: | |
| Blocks: | |
| See also: |
Robert Oostenveld - 2012-09-02 22:41:39 +0200
I had a look at GraphViz and some other tools. There seem to be some common file formats that allow data to be passed between them. e.g. http://en.wikipedia.org/wiki/Trivial_Graph_Format http://en.wikipedia.org/wiki/Graph_Modelling_Language http://en.wikipedia.org/wiki/DOT_language The first one contains a list of other format. GraphViz seems to be widely used, it is also used by other software. See http://www.mathworks.com/matlabcentral/fileexchange/4518
Robert Oostenveld - 2012-09-02 22:43:18 +0200
perhaps call it ft_networkwrite, in line with ft_networkanalysis. There might be some need for shared code between the two, e.g. in data handling and thresholding.
Robert Oostenveld - 2012-09-02 22:44:09 +0200
I had a look at fieldtrip, we now have mbp> ls *write* ft_sourcewrite.m ft_volumewrite.m
Robert Oostenveld - 2012-09-06 10:04:33 +0200
Hi George, Since you used Gephi in your presentation, I suspect that you have already looked at tthe file formats for interoperability. Could you please provide an initial version of an "ft_networkwrite" function? Robert