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Bug 1937 - implement job dependencies in qsubfeval
| Status | CLOSED FIXED |
| Reported | 2013-01-17 23:31:00 +0100 |
| Modified | 2014-03-26 16:51:42 +0100 |
| Product: | FieldTrip |
| Component: | qsub |
| Version: | unspecified |
| Hardware: | PC |
| Operating System: | Mac OS |
| Importance: | P3 major |
| Assigned to: | Robert Oostenveld |
| URL: | |
| Tags: | |
| Depends on: | |
| Blocks: | |
| See also: |
Robert Oostenveld - 2013-01-17 23:31:06 +0100
this should look like jobid1 = qsubfeval(@function1, {arg1}); jobid2 = qsubfeval(@function2, {arg2}, 'waitfor', jobid1); Both jobs would be immediately scheduled, but would use qsub -depend=afterok:
Robert Oostenveld - 2013-01-17 23:47:48 +0100
I studied the code. It needs some modifications to qsublist, which should allow for pbsid = qsublist('pbsid', jobid) to translate from matlab jobid to pbsid. Then it needs some change to qsubfeval to add -depend=afterok:
Robert Oostenveld - 2014-02-18 18:32:48 +0100
thanks to Alexander we now have this implemented. He suggested some code changes, which I incorporated. There is also a (FT specific) test script. roboos@mentat001> svn commit Sending qsub/qsubfeval.m Sending qsub/qsublist.m Adding test/inspect_bug1937.m Transmitting file data ... Committed revision 9211. Some differences to what Alexander suggested: - I did not change qsubget, it is possible to use output=cell to get the options - I did not fix the pre/postambles, but rather call ft_freqanalysis_mvar instead of fr_freqanalysis.
Robert Oostenveld - 2014-02-24 10:56:24 +0100
I closed several bugs at once that all have been resolved for some time. If you disagree, please reopen.