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Bug 2668 - ft_rejectvisual plots non-zero variance as zero
| Status | CLOSED FIXED |
| Reported | 2014-08-05 11:40:00 +0200 |
| Modified | 2019-08-10 12:29:44 +0200 |
| Product: | FieldTrip |
| Component: | core |
| Version: | unspecified |
| Hardware: | PC |
| Operating System: | Windows |
| Importance: | P5 normal |
| Assigned to: | Diego Lozano Soldevilla |
| URL: | |
| Tags: | |
| Depends on: | |
| Blocks: | |
| See also: | http://bugzilla.fcdonders.nl/show_bug.cgi?id=2625 |
- 2014-08-05 11:40:04 +0200
Created attachment 657 Plotting variance using ft_rejectvisual I have been using ft_rejectvisual to inspect and reject trials with variance that is too high (see code snippet below). However, since yesterday afternoon, visual output looks like there is zero variance in the data (see screenshot). In contrast, calculating the variance in MATLAB using var(data_clean{1}.trial{1}) shows that there is variance in the data. Have there been any relevant changes to ft_rejectvisual yesterday afternoon? cfg=[]; cfg.channel='MEG'; for i=1:15 data_clean{i}=ft_rejectvisual(cfg,data_clean{i}); end
Eelke Spaak - 2014-08-05 15:49:36 +0200
Diego, does this have something to do with your commit 9762 (https://code.google.com/p/fieldtrip/source/detail?r=9762)?
Diego Lozano Soldevilla - 2014-08-05 15:59:29 +0200
I was my bad. Now reverted Sending ft_rejectvisual.m Transmitting file data . Committed revision 9763.
Diego Lozano Soldevilla - 2014-08-05 16:34:38 +0200
(In reply to Diego Lozano Soldevilla from comment #2) Solved: Transmitting file data . Committed revision 9764. ft_rejectvisual has cfg.latency with options not available in ft_selectdata (but same field name): ft_rejectvisual: cfg.latency = [begin end] in seconds, or 'minperlength', 'maxperlength', % 'prestim', 'poststim' (default = 'maxperlength') ft_selectdata: % cfg.latency = scalar -> can be 'all', 'prestim', 'poststim' % cfg.latency = [beg end] I bypassed it by: orgcfg.latency = cfg.latency; tmpcfg = []; tmpcfg = keepfields(cfg, {'trials'}); data = ft_selectdata(tmpcfg, data); % restore the provenance information [cfg, data] = rollback_provenance(cfg, data); cfg.latency = orgcfg.latency;% restore the original latency, it should not be 'all' Sophie, could you please confirm my hunch?
- 2014-08-05 17:57:52 +0200
It seems to work fine now.
Robert Oostenveld - 2014-10-07 10:16:15 +0200
let me close this, since it has been resolved
Robert Oostenveld - 2014-10-07 10:16:31 +0200
let me close this, since it has been resolved