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Bug 2787 - implement compiled ft_standalone and allow it to be called from qsubcellfun
| Status | CLOSED FIXED |
| Reported | 2014-12-18 10:15:00 +0100 |
| Modified | 2019-08-10 12:37:04 +0200 |
| Product: | FieldTrip |
| Component: | core |
| Version: | unspecified |
| Hardware: | PC |
| Operating System: | Mac OS |
| Importance: | P5 normal |
| Assigned to: | Robert Oostenveld |
| URL: | |
| Tags: | |
| Depends on: | |
| Blocks: | |
| See also: |
Robert Oostenveld - 2014-12-18 10:15:31 +0100
as discussed with Marcel (CC). This should mimic the spm_standalone interface, and possibly merge that with the interface from the compiled megconnectome (from HCP). Here is a snippet from my email. Ik kan wel eens een ft_standalone maken als proof of principle. En vervolgens kunnen we die ft_standalone en spm_standalone samenvoegen zodat alle verschillende entry-points mogelijk zijn: 1 eval(fread(script)) 2 load input.mat && qsubexec(argin, optin) 3 spm_jobman(input.mat) 4 start de gui
Robert Oostenveld - 2016-01-19 12:18:53 +0100
I have moved the already implemented code from my dirty svn copy over to a branch in my personal development version on https://github.com/robertoostenveld/fieldtrip/tree/bug2787-standalone
Robert Oostenveld - 2017-06-02 11:38:30 +0200
for reference (and to get Roemer involved), see also https://www.humanconnectome.org/documentation/HCP-pipelines/meg-pipeline.html
Robert Oostenveld - 2018-06-28 10:27:03 +0200
I discussed this over breakfast with Jesper (now CCed). The code that I already implemented is in this branch https://github.com/robertoostenveld/fieldtrip/tree/bug2787-standalone It seems clean, so no reason to postpone the merge and to start using it.
Robert Oostenveld - 2018-06-28 12:08:26 +0200
sorry, I CCed the wrong person on this. I will remove Jesper again.
Robert Oostenveld - 2018-06-28 12:08:57 +0200
[bug2787-standalone ca5b8741c] renamed command-line startup script for compiled version, updated documentation 3 files changed, 73 insertions(+), 47 deletions(-) create mode 100755 bin/fieldtrip.sh delete mode 100755 bin/run_fieldtrip.sh
Robert Oostenveld - 2018-06-28 12:13:07 +0200
I merged it in the master branch and release. I will do a bit of testing myself, but important is that it gets tested by others as well.