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Bug 350 - flipdim problems in beamformer tutorial need to be fixed
| Status | CLOSED FIXED |
| Reported | 2011-01-03 13:23:00 +0100 |
| Modified | 2011-02-23 13:51:07 +0100 |
| Product: | FieldTrip |
| Component: | documentation |
| Version: | unspecified |
| Hardware: | PC |
| Operating System: | Mac OS |
| Importance: | P1 normal |
| Assigned to: | Arjen Stolk |
| URL: | http://fieldtrip.fcdonders.nl/tutorial/beamformer |
| Tags: | |
| Depends on: | |
| Blocks: | |
| See also: |
Robert Oostenveld - 2011-01-03 13:23:33 +0100
the beamformer tutorial contains some flipdim stuff that is outdated (spm2 specific) and that should be updated. There is already a shared section on "Checking your segmented volumes" at http://fieldtrip.fcdonders.nl/tutorial/shared/flipdim which is also used in the beamforming tutorial. The flipdim has to be removed from the beamforming tutorial and has to be exclusively part of the flipdim section. Ie. merge the beamforming and flipdim and ensure that it is correct. I also suggest to remove segmentedmriF as variable, and only work with segmentedmri, i.e. do the flipping in place. The segmentedmriF.mat file needs to be removed and replaced by the correct segmentedmri.mat file.
Arjen Stolk - 2011-02-02 14:45:14 +0100
The beamformer does no longer contain flipdim related text. The shared/flipdim page now points to the correctly segmented mri in stead of segmentedmriF.mat. The latter has already been removed from the depository. What still needs to be discussed is whether the flipdim calls in some example scripts are now redundant. Such as in: http://fieldtrip.fcdonders.nl/example/create_single-subject_grids_in_individual_head_space_that_are_all_aligned_in_mni_space http://fieldtrip.fcdonders.nl/example/make_leadfields_using_different_headmodels
Arjen Stolk - 2011-02-02 15:34:10 +0100
Removed the flipdim here: http://fieldtrip.fcdonders.nl/example/create_single-subject_grids_in_individual_head_space_that_are_all_aligned_in_mni_space On this page flipdim is more or less used as an example of how to flip and not presented as necessary. Therefore, it is not removed. http://fieldtrip.fcdonders.nl/example/make_leadfields_using_different_headmodels