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• 1 - read_header slow for ctf_shm
• 10 - ICA on eeg-data gives complex data
• 14 - preprocess does not work on trial-undefined data
• 15 - topography on databrowser square
• 16 - do not redraw topoplot of component when scrolling through trials
• 18 - bug in PSI calculation in connectivityanalysis
• 23 - error in clusterplot
• 33 - Error in ft_timelockstatistics
• 35 - channel selection in ft_connectivityanalysis
• 38 - ensure correct trl handling in selectdata
• 46 - ft_connectivityanalysis coh/psi bug
• 47 - clusterstat emty neighbourhood
• 49 - ft_topoplotIC interactive
• 50 - databrowser cannot deal with overlapping trials
• 55 - speed up read_event for realtime reading from CTF shm
• 59 - ft_sourceinterpolate crashes on
• 63 - forward function calls public function warp_apply
• 64 - fileio module function calls public function fetch_data
• 66 - convert_units and estimate_units are missing
• 67 - convert_units and estimate_units are missing
• 72 - missing ft_ prefix to filetype calls in read_neuralynx_ds.m
• 76 - unable to read neuralynx nev
• 77 - modules on ftp are not up to date and e.g forwinv not split
• 78 - Toolbox for Chieti data not available
• 79 - ft_redefinetrial with overlapping trials (e.g. after ft_appenddata)
• 80 - LFP dataset with tsq extension cannot be read
• 99 - bug in redefine_trial
• 100 - Conversion error in ft_sourcestatistics
• 101 - argument time undefined in ft_spiketriggeredspectrum
• 102 - cfg.inputfile for ft_prepare_bemmodel with 3 input options
• 103 - with addition of optional cfg.inputfile ylim error
• 104 - topoplotTFR cannot correctly refer to topoplotER with cfg.inputfile
• 106 - trl in checkdata
• 120 - pre-allocate mne
• 125 - bug related to renaming of rt_* files
• 127 - error using flag for improved freqanalysis
• 133 - ft_connectivityanalysis averaging trials bug
• 135 - allowuser not updated
• 155 - ft_read_data returns data in int32 format
• 157 - ft_resampledata deletes cfg.trl
• 158 - improve scheduling in peerfeval
• 159 - wrong peerlist
• 171 - unknown path during peerexec
• 196 - external/afni: isrow is a builtin in Matlab R2010b
• 231 - offset2time does not exist on the standard path
• 232 - matlab71 does not have mwSize, buffer won't compile
• 233 - compilation of mex files does not work on matlab71
• 234 - conditional defines in Makefile not allowed on older RedHat version
• 235 - bsxfun is not supported on matlab71
• 236 - ctf acquisition cannot keep up with 407 channels at 600 Hz
• 246 - svn server does not send the updates to twitter
• 288 - dokuwiki software needs to be updated
• 289 - front page: rss feed for maillist is not available on mailman
• 291 - ft_multiplotXXX, interactive, plots only subset of electrodes for the topoplot
• 376 - documentation on ft_dipolesimulation
• 411 - bugzilla repaired
• 418 - ft_prepare_leadfield: variable "grid" is not initialized
• 448 - font colour too light in search results on wiki
• 485 - ft_artifact_zvalue call to non-ft_ prefixfunction
• 511 - warning using ft_write_volume
• 512 - ft_sourceplot can't plot mri
• 546 - matlab startup error
• 549 - ft_volumesegment crashes on ft_getopt
• 550 - ft_volumesegment crashes on SPM, while segmenting its own template
• 555 - ft_plot_mesh on reference channels
• 568 - ft_volumesegment now outputs wrong dimensions of dim field
• 571 - peer resulting in matlab crash
• 582 - 'q' in ft_databrowser doesnt work when in 'component' viewmode/input
• 593 - ft_databrowser crashes on data which was obtained with ft_appenddata
• 625 - cfg.statistic='ttest' not exist in prepare_design.m
• 655 - ft_defintrial at central storage of donders crashes after last nights update
• 666 - CTF system fault writing data?
• 671 - rotate, scale, translate
• 673 - output of ft_dipolefitting is incorrect
• 678 - volume conductor doesn't look good
• 679 - QuikCap 128 NSL layout
• 695 - development: improve visualization of MNE source reconstruction results
• 718 - ft_apply_montage of ft_megplanar causes ft_topoplotTFR problems after ft_rejectcomponent
• 719 - MEGrealign misplaces sensor
• 727 - misleading help about cfg options in ft_volumesegment causes error
• 731 - read digital trigger on neuromag system
• 778 - cfg.megscale cfg.eegscale don't work with ft_databrowser
• 781 - Incorrect memavail reading peerslave command line executable
• 785 - ft_volumesegment is giving me an error message
• 868 - ft_neighbourselection miss sensors after ft_rejectcomponent
• 881 - singleplotTFR fails when the input contains both pow and crsspctrm
• 886 - ft_read_mri requires SPM8 toolbox
• 887 - help of ft_determine_coordsys could be improved
• 899 - senstype does not recognize eeg datastructure
• 900 - ft_determine_coordsys gives an error when mri.coordsys = 'spm'
• 905 - indexing out of range depening on trial-specific number of tapers
• 990 - Incompatibility of new function ft_prepare_neighbours?
• 995 - ft_topoplotCC should use strcmp instead of strmatch
• 996 - ft_singleplotER and ft_ft_multiplotER do not plot multiple datasets
• 1007 - no elec.pnt in the new version (03/10/2011) of channelposition.m
• 1010 - layout of subplots in ft_topoplotER
• 1025 - inconsistent number of tapers
• 1027 - Error when running artf rejection with unequal trial lengths
• 1061 - ft_topoplotER calls itself recursively instead of topoplotTFR
• 1065 - ft_topoplotER: error in script ft_plot_topo.m
• 1068 - ft_read_mri causing a system error
• 1075 - ft_prepare_singleshell doesn't work
• 1081 - ft_read_header.m eyelink ascii 2000Hz data reading error
• 1093 - Artifacts are still rejected after increasing zscore threshold in interactive mode
• 1110 - ft_postamble attempts to address 'cfg' in fieldtrip2spss while this variable is never put in or created
• 1124 - SVN checkout hangs after about 20 files are checked out.
• 1146 - ft_selectdata with no selected trials
• 1158 - Wrong channeighbstructmat in newer ft versions
• 1200 - matlab crashing when starting to use FieldTrip
• 1226 - nanstd: segmentation fault on single precision
• 1240 - ft_read_data call ft_filetype over and over again in call to ft_getopt
• 1254 - Error when running compiled qsub job
• 1263 - Contact Artinis for updated buffer for in NIRS acquisition
• 1264 - Revive automated testing
• 1272 - ft_multiplotER - maskparameter does not work
• 1273 - Error in qsubcompile when nodename has "-" in it
• 1292 - Make online list with publications relevant for the FieldTrip buffer
• 1294 - ft_redefinetrial.m rare channel label output
• 1300 - test_ft_timelockanalysis fails on k=18
• 1301 - Organize bugs to work on during bug-binge 20120201
• 1325 - positive z-axis points downwards after ft_volumerealign
• 1329 - instructions to sourcegrandaverage and sourcestatistics are not clear in combination with the sourcestatistics example script
• 1332 - No data shown with ft_topoplotER after ft_freqanalysis (tfr, keep trials)
• 1334 - stacking in qsubcellfun does not work together with StopOnError=false
• 1336 - StopOnError=false does not work with exceeded walltime errors
• 1339 - wrong number of sensors from bti2grad
• 1340 - PROGRESS
• 1357 - ft_singleplotER crashes on single channel freq data
• 1362 - vol structure does not contain a .mat field, which leads ft_prepare_leadfield to crash
• 1378 - ft_getopt.mexglx looks for libstdc++.so.5
• 1380 - ft_checkdata fails with 'source' data with .pos field
• 1392 - ft_prepare_leadfield calls 'unknown' ft_preamble
• 1396 - One of the test scripts crashes matlab
• 1397 - The tutorial about coherence has a bug
• 1421 - test_bug1309 ends with SVD error on NaN
• 1440 - fixname doesn't parse filename correctly leading to error in warning once
• 1455 - yokogawa2grad_new
• 1469 - inputfile in ft_preprocessing
• 1475 - Alignment of layout problem in ft_plot_topo.m
• 1498 - documentation of baseline type in ft_singleplotTFR
• 1504 - ft_timelockanalysis error when averaging response-locked data
• 1513 - grid and vol different units (neuromag data)
• 1531 - triang didn't work for mtmconvol because of extra [] input argument
• 1532 - Siemens acquisition software cannot be recompiled
• 1564 - Creation of trialinfo field using ft_redefinetrial
• 1570 - ft_filetype overlapping between eyelink and itab MEG header *.asc file extension
• 1573 - GrandAVG and Stats can't be plottet on anatomy or be interpolated on an MRI
• 1607 - realigning channel order changes ft_topoplots
• 1609 - ft_sourceplot ortho method: error
• 1614 - ft_default.trackconfig = 'report' results in obscure low-lvl cfg-object error when plotting interactively in ft_multiplotTFR
• 1615 - qsubcellfun does not detect java runtime error
• 1689 - allow exporting of connectivity networks to a common file format
• 1695 - events are not shown in ft_databrowser
• 1701 - ft_senstype fails to detect CTF275 when it is called on a subset of channels
• 1714 - Some automated tests only fail when run on Torque
• 1719 - ensure that the spike tutorial works on Neurosim data
• 1720 - ensure that the spike-field tutorial works on Neurosim data
• 1734 - redefining indentical trials resulting in different number of samples
• 1735 - ft_appenddata doesn't append data correctly --> ft_databrowser and ft_fetch_data failure
• 1748 - read_neurosim_spikes is slow
• 1749 - problem with ft_artifacft_zvalue
• 1758 - ft_freqanalysis does not work on spike structure
• 1764 - speed up volumethreshold (used in ft_datatype_segmentation)
• 1771 - test_tutorial_clusterpermutationfreq only passes on odd revisions... a.k.a. 'the pulsar'
• 1772 - load_dicom_series structure mismatch
• 1788 - ft_electroderealign doesn't work with option cfg.elec
• 1794 - ft_prepare_leadfield output discrepancy between cm and mm units for predefined grid
• 1798 - changes in ft_votype or ft_datatype_headmodel lead to crash or halt
• 1799 - ft_prepare_leadfield fails due to infinite loop in
• 1800 - ft_topoplotER does not map correctly channels in data to channels in topoplot
• 1802 - Error Message Using ft_volumewrite With Tutorial Data
• 1811 - printstruct.m utility does not support function_handle variable
• 1846 - ft_sourceplot returns multiple labels for one point while ft_volumelookup returns only one label for the same (voxel)point
• 1847 - clusterstat gives error for one sided test (cfg.tail = -1) using nonparametric clusterthreshold
• 1868 - Wrong determination of Sampling Frequency leads to error in Morlet Wave
• 1869 - forward/ft_senstype.m calls non existing sens variable
• 1881 - ft_selectdata_new fails to select frequency limits for coherence data
• 1882 - ft_selectdata_old fails to select frequency limits in freq subfield but not in cohspctrm subfield
• 1894 - ft_xxxplot does not work anymore after updating
• 1895 - see Bug 1896
• 1896 - Bug in ft_freqanalysis since yesterday
• 1936 - warning .img file couldn't be opened when ft_volumesegment is used
• 1959 - ft_senstype doesn't detect the appropriate grad type in comp data
• 1976 - Inverse solution with one time point and one trial fails
• 1997 - Java out of memory error
• 2014 - sam beamfomer
• 2015 - defining gradiometer channels in the neuromag306
• 2016 - Choosing lambda in lcmv
• 2017 - CTF segmentation
• 2019 - sensor fusion in neurmag system
• 2021 - unit conversion in ft_plot_sens
• 2022 - nanmean and nansum .mex files bug crashes matlab
• 2025 - 'infinite' forward model not working properly
• 2026 - Suggestion for MRI and MEG coregistration (particularly useful for neuromag users)
• 2029 - Speed problems after the latest read_neuralynx_ncs update
• 2030 - improve documentation for installing openmmeeg
• 2038 - bugs in fieldtrip2fiff
• 2039 - Reading *.smr files
• 2042 - ft_electroderealign function does not work for me with method: 'manual' and with method: 'template' & using headshape
• 2061 - ft_timelockanalysis: variance not computed if any period with dof=1
• 2074 - ft_spike_plot_raster: trial selection results in sparse raster plot
• 2075 - Event Selection GUI (ft_trialfun_general)
• 2078 - ft_singleplotTFR crashes with cfg.interactively='yes' and data cantains NaN
• 2102 - ft_determine_coordsys
• 2118 - inconsistent number of channels in sensor description after ft_freqanalysis
• 2124 - try/catch ME syntax
• 2125 - File not close in read_biosemi_bdf.m
• 2136 - ft_senstype mis-classification
• 2137 - ft_componentanalysis reports a randomseed error on newer versions of matlab
• 2140 - discrepancy between trials/time when filtering in-memory trials with mirror padding
• 2151 - MFF might have discontinuous data
• 2156 - ft_megplanar.m fails when there is a channel label with less than 3 characters
• 2157 - Fietrip version 8101 is 2.3 GB
• 2178 - prepare_mesh_hexahedral should be able to create meshes of different resolution
• 2210 - EGI header
• 2212 - reading egi .raw data with no events not possible with ft_read_header
• 2219 - reading 4D header with empty label
• 2220 - demeaning with a baseline and ft_preprocessing does not work
• 2221 - problem plotting two averages at once with ft_multiplotER
• 2235 - ft_denoise_synthetic changes grad labels
• 2254 - ft_topoplotIC produces warning that interactive plotting is not supported
• 2255 - cfg.previous is very large after source statistics slowing matlab workspace managing
• 2257 - ft_rejectartifact throws an error when replacing artifact with nans
• 2260 - ft_selectdata_new removes .avg field in timelock data if keeptrials = 'yes'
• 2261 - does svn autosync working fine?
• 2262 - ft_specest_hilbert has a problem with padding
• 2269 - ft_rejectartifact does not work for trials with overlapping samples
• 2323 - read EDF does not use gain when negative
• 2333 - Bug in ft_read_data
• 2337 - ft_topoplotER calls ft_freqbaseline on frequency data without time axis
• 2347 - ft_headmodel_dipoli uses invalid FID
• 2364 - If first channel is filled with NaNs complete output of ft_freqanalysis is NaN
• 2389 - 4D-BTi-EEG channels are not recognized with our data
• 2414 - Neuralynx headers include unicode characters, which can crash ft_read_neuralynx_interp
• 2415 - Cannot read event data from biosemi_bdf
• 2417 - Numerical Precision difference in MATLAB interactive session and qsub
• 2429 - Individual BEM, Leadfield and Electrode rotatetd
• 2436 - beamforming at the skull
• 2462 - ft_preprocessing crashes when reading brainvision dataset
• 2468 - ft_sourcedescriptives can not handle output from beamformer_pcc with keeptrials='yes'
• 2469 - ft_connectivityanalysis with method='powcorr_ortho' does not work with freq data
• 2478 - Adapt ft_preamble to detect prior existence of cfg.outputfile and subsequently skip the caller function
• 2479 - timelockstatistics lead to error when averaging across channels
• 2480 - Backward compatibility with TRY/CATCH ME
• 2481 - new FAQ 'how to perform a multiple sessions MEG experiment'
• 2491 - ft_clusterplot should check if cfg.correctail option was use to warn the proper pvalue
• 2493 - qsubcelfun hangs after around 12 submissions
• 2513 - check data field consistency through different data type structures
• 2524 - ft_write_mri (nii output) incorrectly writes non 1mm isotropic data.
• 2525 - ft_read_event only considers event types "input" in eyelink ascii data
• 2528 - ft_math problem with .avg in timelock data
• 2547 - License checkout handling
• 2558 - ft_timelockstatistics crashes because of dimord
• 2562 - time axes numerical imprecision with ft_redefinetrial overlap option
• 2570 - improve the unit handling in ft_apply_montage
• 2580 - bug with preprocessing, abort is undefined
• 2585 - ICA for same data differ even using fixed random seed
• 2588 - ft_databrowser identifies wrong channel in butterfly mode
• 2593 - confusion between cfg.numcomponent and cfg.fastica.numOfIC
• 2596 - ft_sourcegrandaverage with cfg.inputfile leads to error by ft_selectdata / ft_preamble
• 2601 - allow user specification of where qsubcellfun maintains it input/output files
• 2606 - Problem with ft_timelockstatistics (montecarlo) with avgoverchan = 'yes'
• 2609 - ft_sourceplot with cfg.atlas/.roi throws error (line 345)
• 2614 - Reference to non-existent field 'dimord'.
• 2619 - ft_sourceplot is forced to be interactive
• 2621 - ft_volumesegment ignores/breaks mri.unit
• 2641 - Error in ft_checkconfig using ft_spiketriggeredspectrum
• 2650 - check chanunits data saved on disk
• 2663 - ft_rejectvisual sorting of minimum values
• 2674 - spike functions get errors because ft_preamble_trackconfig
• 2679 - ft_read_sens cannot cope with datasets containing both EEG and MEG
• 2689 - ft_datatype returns error because function 'fieldnames' is not recognized
• 2703 - function pos2transform takes only one input argument but in ft_checkdata is called with 2
• 2711 - ft_math checks wether a field is present, then crashes anyways if it is not
• 2726 - ft_math takes very long to compute operations
• 2731 - ft_preproc_bandstopfilter - Number of input arguments
• 2732 - demeaning in ft_resampledata when data has nans
• 2743 - error when calling ft_mvaranalysis (for granger connectivity computation)
• 2744 - in ft_sourcedescriptives source.avg.csdlabel is not consistently updated resulting in an empty cell array
• 2745 - ft_clusterplot cannot plot clusters per time point as shown in the tutorial
• 2749 - ft_source2full fails when dealing with Nvox x Nvox data
• 2754 - selectdata does not avgovertime
• 2812 - Error when running "ft_singleplotTFR"
• 2820 - ft_sourceinterpolate has missing dim variable declaration
• 2825 - ft_electrodrealign does not work with method='template' and using headshape
• 2834 - ft_selectdata/ft_sourceanalysis handling of .crsspctrm when channels have been subselected
• 2838 - Sourceanalysis using MNE doesn't use noise covariance
• 2841 - ft_preprocessing doesn't select channels anymore
• 2842 - ft_sourcedescriptives crashes because ft_datatype_source removed source.avg
• 2845 - ft_sourceinterpolate failed to align functional to structural
• 2848 - ft_timelockstatistics doesn't cluster properly with custom neighbours struct
• 2855 - voxel index missing in montecarlo statistics for source level data using wcm or maxsize methods
• 2858 - ft_sourcegrandaverage error due to .pos field
• 2862 - jobid and pbsid conversion for qsub and qsubfeval
• 2864 - ft_sourcedescriptives produceses NaNs only (since revision 10263)
• 2865 - ft_read_cifti has problems with .dlabel files that have more than 1 NamedMap
• 2880 - Identify bad channels with ft_rejectvisual without removing them
• 2884 - Bug in ft_definetrial
• 2894 - Error while reading Neuromag data - no data in this range
• 2904 - Implement the threshold free cluster enhancement (TFCE)
• 2905 - improve SMR file format to read spikes and lfps
• 2913 - Typo in ft_getopt.c (mxErrMsgTxt) renders MEX-file invalid in R2015b
• 2915 - Field assignment to a non-structure array object is an error in R2015b
• 2916 - negative trlpadding incorrectly disallowed with in-memory data
• 2920 - ft_databrowser: error in custom datatip string function
• 2929 - ft_artifact_zvalue expects function hline - not part of distribution?
• 2935 - ft_artifact_zvalue does not detect jumps
• 2939 - conflict in cfg.headshape.headshape & cfg.individual.headshape in ft_volumerealign & ft_interactiverealign respectively
• 2943 - should the low-level plotting functions modify axis aspects?
• 2950 - ft_rejectvisual returns wrong sampleinfo for rejected trials on concatenated data
• 2952 - build scripts for audio2ft for linux
• 2953 - ft_read_cifti had undefined variable "data format"
• 2959 - prepare_freq_matrices does not work on data that is derived from 'mtmconvol'
• 2971 - ft_sourcestatistics throws away test data, even if specified in cfg.parameter
• 2977 - datset unusable after call of ft_definetrial
• 2979 - sLORETA
• 3011 - error in ft_componentanalysis
• 3017 - ft_plot_mesh crashes with cfg.method = 'surfaceonly'
• 3021 - github and svn not synced to latest version
• 3035 - ft_apply_montage incorrectly deals with channels containing NaNs
• 3045 - tcdf in external/stats is not fully compatible with its counterpart in matlab R2015b
• 3050 - implement support for the SensoMotoric Instruments (SMI) eye tracker
• 3051 - ft_read_header jams for Neuromag .fiff file, because reliance on "fiff_read_epochs" that does not appear part of MNE toolbox
• 3055 - ft_prepare_headmodel 'dipoli' output does not contain the vol.mat field
• 3063 - build support for Nihon Koden M00 data files
• 3067 - beamformer_sam with precomputed leadfields and filters
• 3069 - both website and bugzilla have been very slow and unresponsive recently
• 3071 - ft_version leaves excessive tmp files
• 3077 - nargin seems to be both a variable and a function in ft_rejectcomponent
• 3085 - ft_multiplotTFR plots channel labels on top of data matrices, rather than above
• 3086 - ft_analysispipeline gives weird result on anonimized tutorial data
• 3087 - running ERF clusterstats tutorial results in quite different plots from wiki
• 3097 - create a figure handle output in ft_plot_dipole
• 3098 - noisy figure output using ft_sourceplot
• 3104 - some workshop wiki pages are down
• 3111 - Hilbert on broadband signal
• 3119 - fitting 2 moving dipoles with constr.sequential = 1 probably wrong
• 3129 - appendstruct doesn't run
• 3130 - the whole http://www.fieldtriptoolbox.org/ wiki is down
• 3138 - improve support for R2016b
• 3144 - ft_checkdata_sens returns error when using MEG structs that worked fine last week
• 3154 - Elekta MEG channel selection broken
• 3155 - ft_channelselection returns "Empty cell array" when senstype is neuromag306_combined
• 3160 - ft_sourceanalysis cannot deal with larger .grad structure than data
• 3162 - beamformer noise estimation on rank-deficient covariance
• 3178 - error in preparing FEM head model for standard MRI
• 3201 - ft_read_header and/or ft_read_sens cannot get elec and grad information
• 3211 - ft_sourceinterpolate: failure to reshape funparameter data into cubic shape + retainment of pos
• 3212 - ft_connectivityanalysis with source data (pcc) in input, failure to correctly reshape the output
• 3216 - DFT filter is not applied for multiple harmonics, if different numbers samples are needed to fit the full cycle
• 3218 - ft_rejectvisual recalculates metric after each trial when data contains NaNs
• 3219 - ft_rejectartifact with reject='nan' ignores trials that are entirely marked as artifact
• 3220 - ft_componentanalysis doesn't accept NaNs in the data
• 3223 - ft_databrowser sets ylim to [NaN NaN] when first trial consists entirely of NaNs
• 3226 - ft_preprocessing gives error "Reference to non-existent field 'checkmaxfilter'."
• 3258 - Compilation of MEX files for Octave
• 3264 - ft_math does not work on raw data structures
• 3308 - Generic syntax description with funname
• 3309 - Warning concerning short-circuit operations in Octave
• 3310 - Spurious display with upper case warning states
• 3312 - Use gammaln instead of lgamma in betapdf.m
• 3315 - ft_filetype's check of MATLAB header is too strict for Octave
• 3317 - ft_singleplotTFR and ft_multiplotTFR show useless warnings
• 3323 - HTML elements with ft_warning in command line mode
• 3324 - ft_warning and backtrace
• 3326 - problem with ft_warning
• 3328 - error with new notification system
• 3332 - File Not found: missing images on ICA tutorials (easy to fix)
• 3352 - MATLAB compatibility with narginchk/nargoutchk
• 3353 - using ft_sourceparcellate fails for max, min and maxabs methods fail if a tissue in the atlas is not found in the source,
• 3356 - ft_platform_supports breaks with optiom 'html'
• 3370 - Interactive use of ft_topoplotER and subplots
• 3378 - ft_singleplotTFR: mask is set to all ones
• 3391 - ft_sourcestatistics documents cfg.roi and cfg.atlas
• 3416 - problem in ft_channelcombination
• 3425 - Plotting issue with cluster based permutation test
• 3435 - Syntax error using vol2mesh
• 3448 - dft filter (freq) increases the spectral power (freq) rather than decrease it
• 3458 - padding in ft_specest_mtmconvol
• 3459 - ft_rejectvisual plots all channels and trials
• 3464 - ft_volumenormalise suppresses further warnings