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• 66 - convert_units and estimate_units are missing
• 67 - convert_units and estimate_units are missing
• 89 - use bwlabeln from spm8 as alternative to image processing toolbox
• 96 - ft_prepare_leadfield does nothing
• 97 - if the user specifies cfg.trials=[] this should result in no trials being processed. Now all trials are processed
• 98 - version tracking in high level ft-functions is backward compatible to pre matlab 6.5
• 99 - bug in redefine_trial
• 100 - Conversion error in ft_sourcestatistics
• 101 - argument time undefined in ft_spiketriggeredspectrum
• 102 - cfg.inputfile for ft_prepare_bemmodel with 3 input options
• 103 - with addition of optional cfg.inputfile ylim error
• 104 - topoplotTFR cannot correctly refer to topoplotER with cfg.inputfile
• 105 - Bug in ft_prepare_mesh breaks SPM8, please fix urgently
• 106 - trl in checkdata
• 107 - Checking for unique channel names is incompatible with not generating fake channel names for fMRI
• 108 - reading in of ctf-header with headerformat ctf_ds outputs a lot of stuff to the screen, making it slow
• 109 - compilation problems because inet_ntop is missing on windows
• 110 - tcpserver thread cannot be stopped on windows
• 111 - discover thread does not want to start when compiled on matlab2009+msvc2008
• 112 - missing figures megrealign
• 113 - missing figures dipole fit
• 114 - Symmetric dipoles example scripts need updates and illustration
• 115 - ft_prepare_mesh not robust in dealing with inputfile
• 116 - Feature that was used by SPM disappeared
• 117 - cfg.channel no longer being used in ft_multiplotTFR
• 118 - make ft_prepare_layout detect identical channel locations
• 119 - plotting functions renamed without fixing the ft_ prefixes in the code
• 120 - pre-allocate mne
• 121 - selectdata with tf-data as input with avgoverfreq for a given foilim gives in the output xxx.freq which is not the average of the requested range
• 122 - ft_rejectartifact doesn't work with data in input when calling artifact_xxx
• 123 - statfun_depsamplesT and statfun_actvsbslT cannot manage nans
• 124 - different linestyles for multiple lines in the same plot
• 125 - bug related to renaming of rt_* files
• 126 - High-pass filter explodes for no visible reason
• 127 - error using flag for improved freqanalysis
• 128 - options for overlapping trials?
• 129 - non prefixed ft_xxx functions on wiki
• 130 - ensure robust behaviour for freqanalysis when user specifies both cfg.channel and cfg.channelcmb
• 131 - Incorporate Gareth Barnes's fix to make single shell model unit independent
• 132 - sobi hsould be added to external/eeglab
• 133 - ft_connectivityanalysis averaging trials bug
• 134 - ft_spiketriggeredspectrum is broken due to new specest_nanfft
• 135 - allowuser not updated
• 136 - the peer should announce that the tcpserver is NOT running
• 137 - implement udpserver
• 138 - loadvar and savevar shoudl default to a meaningful variable name and not to 'data'
• 139 - smartcpu is triggered simultaneously on multiple slaves that share a linux node
• 140 - busy peerslave should announce the memreq of the job instead of the memavail
• 141 - there should be a mechanism for logging the output of the command-line peerslaves
• 142 - peer should announce timavail=0 for zombie and master
• 143 - rename the rda2ft directory to brainamp
• 144 - peer slaves seem to switch to zombie while the master is sending a job
• 145 - documentation in peer.m should be more general introduction
• 146 - cmd line peerslave should use syslog() for output, instead of fprintf
• 147 - improve help in functions by linking to wiki documentation
• 148 - display error on headless slaves
• 149 - there is no way to cancel jobs that are submitted but not yet completed
• 150 - create a consistent implementation of the timers and timeout options
• 151 - cmd-line peerslave PANICs too easily
• 152 - pass global variables to peerslave
• 153 - implement refuseuser, refusehost, refusegroup
• 154 - add a description field in the host package
• 156 - Buffer MEX file does not convert 0-based to 1-based sample indices.
• 157 - ft_resampledata deletes cfg.trl
• 158 - improve scheduling in peerfeval
• 159 - wrong peerlist
• 160 - Bug in LCMV beamformer
• 161 - Test Data for 4D bivariate plotting enhancement
• 162 - fallback to cellfun if there are no slaves
• 163 - using sleep in a thread causes the whole process to sleep
• 164 - peercellfun sends private directories in path, slave gives warning
• 165 - random number generator initializes to the same value on every matlab startup
• 166 - fractional time in seconds is rounded off incorrectly
• 167 - peerlist is empty on stand-alone OS X computer
• 168 - ft_ prefixes are missing in the code (all realtime functions)
• 169 - path info not handled properly
• 170 - use other toolbox license check
• 171 - unknown path during peerexec
• 172 - trialfun_general crashes with cfg.trialdef.eventtype='gui'
• 173 - nice level
• 174 - implement EDF and GDF format in ft_write_data
• 175 - mex files missing for read_16bit
• 176 - peercellfun for sourceanalysis
• 177 - Missing (PowerPC) MEX files
• 178 - document cfg.inputfile and cfg.outputfile
• 179 - plotting problem with connectivityresults
• 180 - make ft_multiplotXXX and ft_topoplotXXX robust against subset of all channels in input, in case of connectivity data
• 181 - unknown method in ft_electroderealign
• 182 - ft_rejectcomponent cannot apply projection on grad.tra if nargin==2
• 183 - include job number in rethrown error inside peerget
• 184 - FIXME on wiki: tutorial » eventrelatedstatistics
• 185 - FIXME on wiki: tutorial » plotting
• 186 - FIXME on wiki: tutorial » fourier
• 187 - FIXME on wiki: tutorial » headmodel
• 188 - FIXME on wiki: tutorial » realtime
• 189 - FIXME on wiki: tutorial » artifacts
• 190 - FIXME on wiki: tutorial » automatic_artifact_rejection
• 191 - FIXME on wiki: tutorial » preprocessing
• 192 - FIXME on wiki: tutorial » coherence
• 193 - deprecate cfg.sourceunits and cfg.mriunits
• 194 - no filetype compatibility-function in compat-folder
• 195 - no ft_ prefix for filetype in low level (neuralynx) read-functions
• 196 - external/afni: isrow is a builtin in Matlab R2010b
• 197 - check which functions need to pass on trialinfo and sampleinfo
• 198 - topoplotER/TFR still defaults using dimord when cfg.zparam is given
• 199 - ft_sourceanalysis with lcmv and precomputed filters and single trial input does not output a pow-field
• 200 - read_sbin_data does not check whether fseek failed
• 201 - Two defaults set for median filter order
• 202 - ft_databrowser: add showing of events in vertical view mode
• 203 - add ft_denoise_pca to the release of fieldtrip
• 204 - ft_freqanalysis crashes when specest implementation is used
• 205 - brain surface in BEM eeg should be called "inside skull"
• 206 - ensure consistent use ouf cfg.previous
• 207 - use tic and toc with an explicit timer name in sourceanalysis
• 208 - ft_ prefix inverse module
• 209 - volumerealign does not output the cfg that was used in the output mri
• 210 - ft_plot_slice and ft_plot_ortho should be written, probably also ft_plot_montage
• 211 - add new spike functions to fieldtrip main trunk
• 212 - reference documentation should contain statfuns
• 213 - reference documentation is inconsistent with ft_ prefixes in public
• 214 - the fieldtrip/private/triplot function is deprecated and should be replaced by ft_plot_mesh
• 215 - freqanalysis depends on the matlab function window, from the signal processing toolbox
• 216 - to do: develop ft_qualitycheck
• 217 - labelcmb2indx should be a private function
• 218 - add matlab version to output cfg.version
• 219 - change syslog output to avoid triggering hobbit/bb
• 220 - freqanalysis: if cfg.foi contains frequencies above Nyqiest an error should be given
• 221 - ft_freqstatistics (montecarlo) should throw error if receiving input from ft_freqgrandaverage
• 222 - different methods are used for triangular mesh decimation
• 223 - peermaster and peerslave don't launch
• 224 - rename and documentation of fieldtripdefs.m
• 225 - what's the effect of slow drifts in my data on my spectral decomposition?
• 226 - dof of new implementation of ft_freqanalysis is inconsistent with the old one
• 227 - grids containing leadfields should contain a label to make the interpretation of the leadfield less ambiguous
• 228 - preprocessing option cfg.blc should be renamed
• 229 - ft_selectdata keyval 'rpt', [...] sorts the requested trials with fourier-input
• 230 - ft_singleplotTFR doesnt handle chansel correctly with cohspctrm data
• 231 - offset2time does not exist on the standard path
• 232 - matlab71 does not have mwSize, buffer won't compile
• 233 - compilation of mex files does not work on matlab71
• 234 - conditional defines in Makefile not allowed on older RedHat version
• 235 - bsxfun is not supported on matlab71
• 236 - ctf acquisition cannot keep up with 407 channels at 600 Hz
• 237 - ft_selectdata cannot handle subj_chan_freq_time
• 238 - ft_plot_mesh should support plotting of colors that are dependent on the data
• 239 - ft_plot_slice default location of [0 0 0] fails
• 240 - interactive topo/single plotting does not work
• 241 - wiki changelog should also show which svn version the change is related to
• 242 - consistent binary executables
• 243 - ft_headmodel_halfspace should be implemented for EEG
• 244 - ft_headmodel_singleshell should be implemented
• 245 - the forward module should be documented
• 246 - svn server does not send the updates to twitter
• 247 - ft_clusterplot no longer works
• 248 - add mini-spm8 version to fieldtrip/external
• 249 - problem in local sphere handling
• 250 - plot_matrix with saturation as maskstyle gives 'hidden' gray areas
• 251 - documentation has to be anonimized
• 252 - checkconfig should be ft prefixed
• 253 - missing function in ft_connectivity_granger
• 254 - call to checkdata in functions like topoplotER/TFR should be based on dimord
• 255 - topoplotER does not accept 1 dimensional data
• 256 - ft_clusterplot cannot plot TFR clusters
• 257 - ft_freqanalysis_wltconvol, fourier not valid?
• 258 - improve support for plexon nex files
• 259 - the compilation procedure should be documented
• 260 - make realtime table complete w.r.t. bci2000 alternatives
• 261 - update the status of "work in progress" mentions
• 262 - consistent naming for tmsi
• 264 - the neuromag realtime interface needs to be documented
• 265 - resubmit control for variable compute times
• 266 - ModEEG cannot read from Bluetooth
• 267 - need to supply neighbours in timelockedstatistics
• 268 - remove peer from list in case open_tcp_connection error
• 269 - problem in printing job information
• 270 - add mex files and other code for controlling vnc server
• 271 - the use of matlabversion fails for 2010a and b because they are represented as 7.10 and 7.11
• 272 - inconsistent data handling inside multiplotER w.r.t. cfg.inputfile
• 273 - add support for channel-selection in multiplotTFR
• 274 - add support for channel-selection in topoplotER/TFR
• 275 - timallow/timreq have to be made consistent on master and slave
• 276 - add support for channel-selection to multiplotCC
• 277 - peercellfun resubmission should be improved
• 278 - implement MaxBusy option in peercellfun
• 279 - ft_ prefixes missing from the preproc documentation
• 280 - ft_ prefixes missing from the preproc documentation
• 281 - new implementation of freqanalysis throws errors if ntrials = 1
• 282 - make specest development documentation on wiki conform to the other sections
• 283 - add file-externals for specest_hilbert and others
• 284 - make implementation for specest_convol (previously tfr)
• 285 - make implementation for specest_wavelet (previously wltconvol)
• 286 - make implementation for specest_hilbert
• 287 - update FAQs on wiki for all specest_functions/methods
• 288 - dokuwiki software needs to be updated
• 289 - front page: rss feed for maillist is not available on mailman
• 290 - peercellfun error: unknown function keyvalcheck
• 291 - ft_multiplotXXX, interactive, plots only subset of electrodes for the topoplot
• 292 - ft_freqanalysis does not work with variable length trials and method = 'mtmfft'
• 293 - source statistics on timeseries (source.mom) does not work
• 294 - there are idle slaves with timavail=0
• 295 - resubmitted jobs should be postponed, i.e. first submit all jobs once
• 296 - enginetimeout and zombietimeout should be configurable on the command line
• 297 - warning takes sprintf-like input directly
• 298 - create mex file implementation of keyval
• 299 - add persistent input variable checking to peer/private/getglobal
• 300 - link the fieldtrip bugzilla to the debian bugzilla
• 302 - sourceanalysis fails due to ft_prepare_leadfield throwing away the data
• 303 - switching from zombie to ilde slave should be delayed, e.g. 5 minutes
• 304 - the user should be allowed to specify the variance of timreq
• 305 - trunk/ft_freqanalysis_mtmconvol/mtmfft still exists, including their compats
• 306 - too many resubmissions with small nr of collected jobs
• 307 - rename fieldtrip/public into fieldtrip/utilities
• 308 - get rid of realtime/utilities
• 309 - fail to submit a job
• 310 - replace all calls to preproc by calls to ft_preprocessing, merge preproc with ft_preprocessing again
• 311 - throw a warning in all compat/*.m un-prefixed version to encourage users to start using ft_*
• 312 - statistics_* should be ft-prefixed
• 313 - add forward model computation for FNS FEM solver
• 315 - fieldtrip/private/preproc() should be replaced by ft_preprocessing where possible
• 316 - the public functions should be ft_ prefixed
• 317 - hasyokogawa should be merged with ft_hastoolbox
• 318 - make list of functions for MNE integration
• 319 - de-mean spike snippet data prior to fft
• 320 - ft_spike_sub_crossx.mexmaci should not be in main directory
• 321 - the spike plotting functions should be renamed ft_spikeplot_xxx for consistency with the other plotting functions
• 322 - plexon nex with different sampling rate are incorrectly read
• 323 - read_plexon_nex incorrect for strobed channel with triggers
• 324 - ft_topoplotER errors with ft_timelockgrandaverage data (with proposed fix)
• 325 - statfun_depsamplesT units of observation issue
• 326 - jobs result in "resubmitting because engine takes too much time to start"
• 327 - engines are not efficiently reused
• 328 - ft_timelockgrandaverage should either output an average or individual data
• 329 - test for the new email address
• 330 - mintimreq should be user specified
• 331 - smartcpu should switch off the "smallest" peerslave first
• 332 - the sluggishness in the peerslave smartxxx estimates has to be reimplemented
• 333 - smartcpu switching is inconsistent
• 334 - specest_mtmconvol shifts time-bins 1 bin to the right, it shouldn't
• 335 - warning backtrace in peercellfun not functional
• 336 - add explicit checks for non-used cfg options in ft_freqanalysis
• 337 - implement padding for specest_hilbert
• 338 - ft_topoplotER is broken after the last change allowing for channel selection
• 339 - timelock data structure should not contain fsample
• 340 - dipole data structure should be described
• 341 - multivariate documentation should be made consistent
• 342 - ft_voltype documentation should contain a list of types
• 343 - purpose of baseline in ft_sourceanalysis?
• 345 - preproc module documentation needs to be extended with new functions
• 346 - statfun_xxx documentation should include explanation that ft_xxstatistics should be called
• 347 - mailing list archive only contains mails starting from december 2010
• 348 - make spatial clustering on 2D 'meshes' more general
• 350 - flipdim problems in beamformer tutorial need to be fixed
• 351 - exercises should be reformatted
• 352 - after switching the warning off, it should be switched on again
• 353 - ft_sourcegrandaverage should work with source datatypes only
• 354 - noise-covariance estimation for source-analysis with minimum-norm estimate
• 355 - development: new functions for creating cortical mesh (using FreeSurfer)
• 356 - development: creating cortical mesh (using FreeSurfer) works only on .mri data
• 357 - make an exercise note in the wiki
• 358 - make http redirects for tutorial -> documentation/tutorial
• 359 - update the module figures with th eboxes, ask Stephen for colors
• 360 - fix the umask problem with the public peerslaves
• 361 - prepare_dipole_grid should be renamed into ft_prepare_sourcespace
• 362 - peer2peer: not starting the engine of one the peerslaves causes peercellfun to given an error when using stoponerror = false
• 363 - Johanna does not have her own bug list at the bottom
• 364 - tutorial/eventrelatedaveraging matlab data missing from ftp server
• 365 - testdata/mri directory does not contain any files
• 366 - pos2dim3d behaves as if it is pos2dimNd
• 367 - megrealign example does not work
• 368 - freqanalysis_old always throws an error requesting to call it directly
• 369 - No horizontal scaling possibility in ft_databrowser on noncontinuous data
• 370 - private/prepare_time_freq_data calls fixdimord
• 371 - check whether keepoutside can be removed from ft_checkdata
• 372 - ft_databrowser shortcut ctrl+[num] errors when no artifacts are defined
• 373 - new function related to source space: ft_reducepatch
• 374 - Plotting does not allow selection on certain frequency bands or time windows only
• 375 - tutorial data directories on ftp server should be made consistent with tutorials
• 376 - documentation on ft_dipolesimulation
• 377 - topoplotER expects .label field instead of .topolabel when called by topoplotIC
• 378 - rename killswitch into watchdog
• 379 - help ft_freqanalysis
• 380 - implement ztransform/standardize in rejectvisual
• 381 - ft_write_volume should support nifti
• 382 - peerslave syslog output is inconcistent in case of error (job number seems to increment)
• 383 - selecting a subset of trials from source data (pcc mom) does not work
• 384 - unpredictable crashese during peer computing
• 385 - make new website
• 386 - reimplement source2sparse and source2full for the new source representation
• 387 - broken link to walkthrough.pdf
• 388 - Make Getting Started with .bdf dataformat (from CUNY)
• 389 - add Facebook group + integrate on Wiki
• 390 - change fontsize for code text on wiki to same as main text
• 391 - add TOC, enabled per page
• 392 - enable rotating photo's for news item (e.g. integrated with FB)
• 393 - implement a warningonce function
• 394 - all faqs need a 'faq' tag
• 395 - create faq on 'what to do when my script does not work anymore, and it worked perfectly fine in 2003'?
• 396 - make wiki pages nicely exportable to pdf
• 397 - move private/prepare_dipole_grid to ft_prepare_sourcemodel in main directory
• 398 - the function isstr is still being used, although it is deprecated by matlab
• 399 - Bug with estimating power of Nyquist freq with ft_specest_mtmfft.m
• 400 - ft_specest_wavelet: fsample calculation does not produce integer
• 401 - update publications list on wiki
• 402 - too many warnings on sampleinfo field when converting ERF into raw data structure with 1 trial
• 405 - Establish a closer distinction / relation between ft_databrowser and ft_rejectvisual
• 406 - fieldtrip course tuebingen - scaling during mtm 'sine'
• 407 - provide hyperlinks between tutorials
• 408 - ft_prepare_vol_sens assumes the existence of elec.tra which is usually not true
• 409 - ft_compute_leadfield crashes without vol.skin_surface field for bemcp BEM
• 410 - read_eep_cnp does not work on Linux machines (Donders mentat)
• 411 - bugzilla repaired
• 412 - correcttail option in montecarlo has incorrect default
• 413 - add eeglab2fieldtrip to the fieldtrip/external/eeglab directory
• 414 - beamformer tutorial needs a little restructiring
• 415 - ft_checkcoordsys
• 416 - search results on wiki often overlap due to long page names
• 417 - ft_prepare_sens_vol does not work for EEG
• 418 - ft_prepare_leadfield: variable "grid" is not initialized
• 419 - singleplotTFR is not robust
• 420 - please address the issues below
• 421 - ft_preproc_bandstopfilter uses range() from the stats-toolbox
• 422 - the watchdog should also allow for monitoring the memory usage
• 423 - wiki software needs to be updated
• 424 - Problem with event values in ASA data
• 425 - using trackconfig = 'on' does not work robustly
• 426 - inconsistent output of statistics_montecarlo with correcttail='prob'
• 427 - color labels of the lines don't display correctly when using multiplotER with multiple inputs
• 428 - ft_multiplotER is very slow
• 429 - ft_electroderealign fails with cfg.method = interactive
• 430 - compat/stats and compat/signal should go
• 431 - ft_electrorealign should call the plotting function from the plotting module
• 432 - statfun_correlationPearson should be implemented
• 433 - improve search option on mailing list
• 434 - ft_componentbrowser uses a dirty trick for topoplotting that is not supported in ft_plot_topo
• 435 - ft_componentbrowser uses wrong settings for plotting topoplots
• 436 - ft_rejectvisual makes inefficient (or no?) use of ft_checkdata
• 438 - ft_checkdata should get siblings like ft_checkraw, ft_checkfreq, ft_checksource, ft_checkvolume
• 439 - move and rename some realtime executables
• 440 - the realtime directories shoudl get README and COPYING files
• 441 - implement ft_realtime_signalrecorder
• 442 - the cfg defaults for the mri and meg headlocalizers should be specific to our lab computers
• 443 - merge ft_poll_buffer into ft_read_data
• 444 - move the serPort in ft_omri_quality with ft_write_event
• 446 - reorganize the development/realtime documentation
• 447 - output preprocessing .trial if input is .avg
• 448 - font colour too light in search results on wiki
• 449 - improve the release procedure on the ftp server to avoid many zip files that are the same
• 450 - the data stored in /home/common/matlab/fieldtrip/data/tutorial needs to be updated
• 451 - ft_multiplotXXX and ft_singleplotXXX should be cleaned up
• 452 - cpompat functions are being called by trialfun_xxx
• 453 - the faqs on artifacts should be indentified and tagged
• 454 - figures on visual artifact tutorial should be smaller
• 455 - determine whether ft_componentbrowser can be removed
• 456 - Add EGI MFF data format
• 457 - coherence tutorial problems because of label and labelcmb fields
• 458 - fixdimord cannot handle dimord voxel
• 459 - potential error in the use of preprocessing
• 460 - fclose(fid) missing in read_micromed_trc.m
• 461 - documentation points to pdf
• 462 - there's mixed usage of the nanXXX and nan_XXX throughout the code
• 463 - ensure that all linked wiki pages exist
• 464 - ft_freqbaseline looks outdated and inefficiently implemented
• 465 - problem with labels in topoplotIC after pca
• 467 - EGI GSN electrode templates conflict with ft_senstype/ft_senslabel
• 468 - statistics_montecarlo / statfun_indepsamplesF behaves strangely...
• 469 - executables for dipoli
• 470 - some junk in the multivariate directory needs to be removed
• 471 - fix the inside detection for a dipole grid in case of a halfspace model
• 472 - Matlab crashes after call to ft_write_data
• 473 - fix the svn:externals for peer and openmeeg
• 474 - too many file externals in fieldtrip/private
• 475 - ft_inside_vol should be used instead of find_inside_vol
• 476 - reference doc on wiki doesnt fit
• 477 - implement an ft_examplefunction function
• 478 - implement an svn hook to replace the svn externals
• 479 - ft_singleplotTFR: coherence data with labelcmb field will not plot
• 480 - label, labelcmb, channel, channelcmb confusion/problems?
• 481 - the tutorial datasets have to be anonimized
• 482 - integrate FNS FEM solver
• 483 - Re: [FieldTrip] FT doesn't close .fif files
• 484 - integrate SIMBIO FEM solver
• 485 - ft_artifact_zvalue call to non-ft_ prefixfunction
• 486 - implement getopt, setopt and checkopt fiunctions
• 487 - warning message is too long
• 488 - planarchannelset, and therefore ft_combineplanar, uses senstype instead of ft_senstype
• 489 - savevar (i.e. cfg.outputfile) should use an uncompressed format if the variable is small
• 490 - google code stuck at r2780
• 491 - ft_channelrepair - mismatch in fixed channels
• 492 - consider adding more social network features to the wiki
• 493 - google search results for "fieldtrip" are much worse than they used to be
• 494 - Problems reading events with ft_read_event
• 495 - test bug
• 497 - ft_databrowser uses wrong settings for plotting topoplots
• 498 - Numerical accuracy affecting usage of "nearest" on time axes
• 499 - ft_databrowser does not support variable-length trials
• 500 - fixtrialdef throws an inconsistency warning if data has been resampled
• 501 - implement a movieplot function for MNE source reconstructions
• 502 - replace keyval by ft_getopt
• 503 - compile some of the missing mex files on win32 and win64
• 504 - cfg.method='glm' in help ft_freq/timelock/sourcestatistics
• 505 - p waarden > 1 met freqstatistics
• 506 - Suggestion for reading gdf events
• 507 - Boxes masking data lines with multiple datasets
• 508 - ft_singleplotER: box sizes of mask do not adapt with ylim.
• 509 - databrowser does not plot artifacts (and events) when drawing components
• 510 - spm not added to path (for call to spm_bwlabel)
• 511 - warning using ft_write_volume
• 512 - ft_sourceplot can't plot mri
• 513 - missing figures on wiki (development section)
• 514 - Beamformer tutorial pictures do not coincide with current code
• 515 - beamform tutorial plots do not match results from current pipeline
• 516 - mtmfft returns a cfg.foi
• 517 - Subject0x.ds datasets are not completely anonymous
• 518 - ft_databrowser fails when cfg.dataset is specified and no data argument is provided
• 519 - databrowser expects a topo from the input, which fails when reading from file
• 520 - Neighbourselection crashes when providing a layout and no neighbourdist
• 521 - channel selection in ft_multiplotTFR
• 522 - layout of exercise 3 in the TFR tutorial is ugly
• 523 - strange problems in a sourceanalysis pipeline
• 524 - check transformation matrices before and after writing and reading freesurfer MRIs
• 525 - ft_databrowser issues with scaling and viewmode when data is read from disk
• 526 - ft_freqdescriptive sets hasrpt if dimord contains 'subj', but errors later when no dimord does not contain 'rpt'
• 527 - ft_selectdata does not support dimord 'subj'
• 528 - ft_fetch_data does not correctly check whether requested data falls within 1 trial
• 529 - ft_preprocessing should support padding for continuous data in-memory
• 530 - check description of design matrix conditional on required statfun
• 531 - ft_freqanalysis does not work properly with mtmconvol and 'keeprpt' = 1
• 532 - implement a ft_crossfreqanalysis function
• 533 - implement RetryOnError
• 534 - reference doc for the peer module does not appear on the wiki
• 535 - can't use ft_singleplotTFR on wavelet/mtmconvol powandcsd data
• 536 - ft_connectivityanalysis does not accept wavelet/fourier input
• 537 - ft_freqanalysis should error with cfg.output='fourier and cfg.keeptrials='no'
• 538 - ft_freqstatistics errors on connectivity data made from fourier data with dimord chan_chan
• 539 - svn sync to sourceforge fails
• 540 - wavelet convolution in ft_freqanalysis flips phase of signal
• 541 - try-catch construction incompatibe with matlab74
• 542 - Speed up ft_multiplotER
• 543 - implement coordinate transformation for itab system
• 544 - implement cfg.downsample for ft_volumesegment
• 545 - ft_selectdata should support toilim for source input
• 546 - matlab startup error
• 547 - Neuroscan eeg file downloads problem
• 548 - incorrect timreq update
• 549 - ft_volumesegment crashes on ft_getopt
• 550 - ft_volumesegment crashes on SPM, while segmenting its own template
• 551 - add another google search button
• 552 - ft_volumesegment gives a segmented structure with 3X1 dim
• 553 - design test scripts for FNS and SIMBIO FEM solvers
• 554 - ft_sourceanalysis (method:mne)
• 555 - ft_plot_mesh on reference channels
• 556 - implement ft_prepare_headmodel
• 557 - ft_volumereslice on 'ctf' aligned mri data
• 558 - ft_sourceanalysis does not seem to handle cfg.lambda
• 559 - figuring out how to work with Yokagawa, especially co-registration
• 561 - not able to plot (topo/singleTFR nonlinear (time/freq) axis
• 562 - when recommending a page with FB, a stupid firefox thumbnail appears (instead of a FT)
• 563 - ft_sourcedescriptives gives error because of missing dim in output of ft_sourceanalysis
• 564 - something goes wrong with reading tutorial dataset, any recent changes in fileio?
• 565 - make new banners (NY, st. louis?)
• 566 - make a poll on the wiki to determine the most-used matlab versions
• 567 - beamformer tutorial, left/right flipped?
• 568 - ft_volumesegment now outputs wrong dimensions of dim field
• 569 - should ft_plot_vol use cfg instead of key-value pairs?
• 570 - the function 'channelposition' cannot handle some datatypes properly
• 571 - peer resulting in matlab crash
• 572 - ft_megplanar outputs old ICA channel labels (and too many channels)
• 573 - improve event handling for neuroscan cnt and eeg formats
• 574 - example script uses the deprecated prepare_dipole_grid function
• 575 - neighbourselection now has option 'method' but this crashes when you call it from the stats functions
• 576 - timelock_neuromag122 seems to contain data from a 306-channel system
• 577 - Bug in the identification of channels to use for repairing a bad channel
• 578 - Incorrect load from cnt neuroscan file when with segmentation
• 579 - ft_checkdata can get the wrong dim with length() on line 761; use size() instead
• 580 - ft_filetype.m contains references to the nonexistent and mysterious "F.C. Donders Centre"
• 581 - peercellfun should only print "updated timreq/memreq" immediately before submitting a new job
• 582 - 'q' in ft_databrowser doesnt work when in 'component' viewmode/input
• 583 - ft_selectdata probably has difficulties if nrpt/nsubj is equal to any of the other dimlengths.
• 584 - Hilbert transform with output 'angle' gives output < -pi and > pi
• 585 - invalid MEX file error in clusterstat
• 586 - Problem with ft_selectdata
• 587 - ft_volumesegment accepts priors only for humans, default SPM options are rigid
• 588 - strfind error
• 589 - freqanalysis output doesnt contain cfg.previous anymore
• 590 - wltconvol gives weird results in lower frequencies
• 591 - ft_neighbourselection should not be called by other FT functions
• 592 - tutorials have settings/references using old-style freqanalysis
• 593 - ft_databrowser crashes on data which was obtained with ft_appenddata
• 594 - yokogawa trigger channels are not correctly detected
• 595 - reading a few channel from an sqd file is very slow and takes too much memory
• 596 - plotting of events in ft_databrowser is broken
• 597 - channel labels in meg160 software user-interface start with "000" and not with "001"
• 598 - the description on http://fieldtrip.fcdonders.nl/external needs and update
• 599 - problems with lfp test data on /home/common
• 600 - ft_singleplotTFR: mask is not set properly
• 601 - no peerslaves found
• 602 - questions in tutorials should have an answer
• 603 - ft_qualitycheck cronjob should save matfiles to Odin
• 604 - introduction tutorial should follow the documentation guidelines
• 605 - analysis protocols tutorial should be merged with the introduction tutorial
• 606 - scripting tutorial should follow the documentation guidelines
• 607 - preprocessing tutorial has to be restructured
• 608 - eventrelatedaveraging should follow the documentation guidelines
• 609 - timefrequencyanalysis tutorial should follow the documentation guidelines
• 610 - coherence tutorial should follow the documentation guidelines
• 611 - beamformer tutorial should follow the documentation guidelines
• 612 - headmodel tutorial should follow the documentation guidelines
• 613 - eventrelatedstatistics tutorial should follow the documentation guidelines
• 614 - cluster_permutation_timelock tutorial should follow the documentation guidelines
• 615 - cluster_permutation_freq tutorial should follow the documentation guidelines
• 616 - multivariateanalysis tutorial should follow the documentation guidelines
• 617 - plotting tutorial should follow the documentation guidelines
• 618 - layout tutorial should follow the documentation guidelines
• 619 - easycapXX-avg layouts have to be improved
• 620 - realtime tutorial should follow the documentation guidelines
• 621 - creating a brainmask in MNE pipeline is not in FT style
• 622 - overall peak-to-peak value calculation instead of channelwise peak-to-peak in ft_artifact_threshold
• 623 - ft_pimplot not in the release anymore?
• 624 - ft_timelockanalysis doesn't work with cfg.vartrllength=1 anymore
• 625 - cfg.statistic='ttest' not exist in prepare_design.m
• 626 - ft_channelselection
• 627 - ft_sourceplot does not plot anatomy & fun correctly
• 628 - wiki pages suddenly appear blank
• 629 - implementation problems with epoched egi_mff format
• 630 - ft_databrowser redraws everything when marking new artifacts
• 631 - reorganize the fieldtrip/template directory
• 632 - writing test file for SimBio
• 633 - write test file for FNS
• 634 - add spherical spline interpolation to ft_channelrepair
• 635 - ft_channelrepair should use cfg.neighbours instead of cfg.neighbourdist
• 636 - document how to make the wiki banners
• 637 - ft_appenddata should be extended to also support appending timelock, freq and source data
• 638 - add missing people to fieldtrip-bugs mailing list
• 639 - fieldtrip-lite should exclude the templates and the externals
• 640 - make trialfun, statfun and browsefun behave consistently
• 641 - hastrialdef should be renamed into hassampleinfo in ft_checkdata
• 642 - ft_channelselection cannot handle channelexclusion of channels denoted with a *
• 643 - maintaining the multicast list can be made conditional on the status
• 644 - ft_channelrepair does not work on missing channels
• 645 - Increase the speed of reading in xml files, Anyone an idea how to??
• 646 - electroderealign should be improved for yokogawa/MEG and should be renamed into sensorrealign
• 647 - create a fieldtrip/warp toolbox
• 648 - ft_uilayout and layoutgui should perhaps be merged
• 649 - ft_sourceplot option cfg.inputcoordsys should be deprecated
• 650 - user feedback in ft_sourceplot needs to be cleaned up
• 651 - the prepare_design function should be deprecated/removed
• 652 - use of trialfun_general should be made explicit somewhere
• 653 - trialfun_trial should be enhanced to also return the trigger code (if possible)
• 654 - update functions using legacy trl matrix to use sampleinfo (and offset) instead
• 655 - ft_defintrial at central storage of donders crashes after last nights update
• 656 - ft_timelockanalysis: output should have a dimord consistent with its fields
• 657 - multiplotTFR displays incorrect x-axis values
• 658 - Neuromag-306 data incompatible with ft_rejectvisual
• 659 - add tic/toc to all functions and include in output cfg
• 660 - Undefined function or variable 'dataindx' in ft_megplanar using planarmethod = sourceproject
• 661 - ft_chantype needs to be updated to use the channel labels
• 662 - ft_megplanar should be made consistent with ft_neighbourselection
• 663 - ft_prepare_layout fails for yokogawa64_planar
• 664 - private/sensortype.m should be deprecated
• 665 - ft_definetrial / trialfun_general fails
• 666 - CTF system fault writing data?
• 667 - error in artifact detection tutorial
• 668 - ft_artifact_zvalue causes a steadily increasing memory use
• 669 - Open a new figure only if all possible errors have been checked for
• 670 - ft_channelselection cannot handle all regular 'regular expressions'
• 671 - rotate, scale, translate
• 672 - ft_multiplotTFR should support different scaling for different sensor types
• 673 - output of ft_dipolefitting is incorrect
• 674 - multisphere function not found
• 675 - ft_freqstatistics errors with single-dimension data (avgovertime/chan/freq='yes')
• 676 - ft_appenddata should ensure consistent handling of sampleinfo etc when appending over channels
• 677 - SVG figures sometimes fail on wiki
• 678 - volume conductor doesn't look good
• 679 - QuikCap 128 NSL layout
• 680 - bad axes plotting in ft_multiplotER
• 681 - ft_read_vol cannot read from a neuromag fif file
• 682 - MEG64
• 683 - ft_movieplot for Time-frequency analysis
• 684 - channelposition returns incorrect results on grad-structure in attached file
• 685 - warning_once should be copied into specest/private
• 686 - the input and output units of ft_compute_leadfield should be determined
• 687 - improve help for ft_volumesegment
• 688 - check the literature references for 2005-2007
• 689 - check the literature references for 2008
• 690 - check the literature references for 2009
• 691 - check the literature references for 2010
• 692 - check the literature references for 2011
• 693 - channelposition needs to be made robust.
• 694 - Suggestion to use (Matlab) syntax highlighting in <code>
• 695 - development: improve visualization of MNE source reconstruction results
• 696 - off format writer
• 697 - potential issue with ft_freqstatistics
• 698 - development: code is not in FT style
• 699 - development: group analysis and statistics on MNE source reconstruction
• 700 - new dokuwiki release available: 2011-05-25 "Rincewind".
• 701 - ft_volumesegment skullstrip output is smoothed
• 702 - allow feedback to be turned off in ft_freqanalysis
• 703 - trialfun_general miscalculates trldur if no poststim but prestim is given?
• 704 - WIKI: clicking on banner/FTlogo should link to 'home' page
• 705 - ftFuncTimer is missing in ft_connectivitysimulation
• 706 - ftFuncTimer is also not initialized in ft_mvaranalysis
• 707 - implement a ft_connectivityplot function
• 708 - re-implement ft_timelockstatistics
• 709 - create ft_connectivity_xcorr
• 710 - create faq on the representation of bivariate frequency domain data
• 711 - implement an interface to the graph analysis toolbox by rubinov/sporns/kötter
• 712 - build in the non-homogeneous smoothing at the source level
• 713 - implement support for Windaq data format
• 714 - make a mex implementation of nanmean, nanvar etc
• 715 - ft_sourceanalysis with method = pcc should pass on trialinfo
• 716 - ft_megrealign misbehaves when realigning
• 717 - ft_getopt does not return an output if the input is something else than a cell-array, a struct, or a config object
• 718 - ft_apply_montage of ft_megplanar causes ft_topoplotTFR problems after ft_rejectcomponent
• 719 - MEGrealign misplaces sensor
• 720 - add Vista mesh reader writer to ft_r/w_headshape
• 721 - patch for rejectvisual_summary.m to visually show which trl/chan were removed
• 722 - enable data cursor mode in rejectvisual_summary
• 723 - make ft_connectivityanalysis more robust to deal npsf
• 724 - ft_connectivityplot should take multiple inputs and plot them in 1 figure
• 725 - ft_connectivityplot should work in linearly indexed data
• 726 - issue with addressing default for smoothing in ft_volumesegment
• 727 - misleading help about cfg options in ft_volumesegment causes error
• 728 - change to ft_channelselection in SVN commit 3548 breaks some wildcard functionality
• 729 - ft_checkdata -> fixcsd with 'sparse' -> 'full' flips the directionality with respect to convention
• 730 - ft_singleplotER crashes when called from ft_multiplotER with cfg.matrixside = 'feedforward'
• 731 - read digital trigger on neuromag system
• 732 - csd2transfer crashes on initialising some matrix when sfmethod = 'bivariate' and csd is not positive definite
• 734 - ft_sourceanalysis: method ='sam', does not work
• 735 - rename cfg.option cohrefchannel into refchannel
• 736 - rename the values in cfg.matrixside (plotting functions)
• 737 - warning on/off should always revert to the previous warning state at the end of the function
• 738 - ft_read_event and ft_read_data have to be made faster
• 739 - ismember is slow and should be replaced (if possible) by any(strcmp(...))
• 740 - representation of pdc and dtf with dimord 'chan_chan' should be consistent with granger
• 741 - cfg.statistic not in statistics_crossvalidate
• 742 - incorrect handling of defaults in ft_freqanalysis
• 743 - using <code matlab> leads to very ugly exported pdf-files
• 744 - cfg.latency should be made forbidden/deprecated in ft_timelockanalysis
• 745 - similar to cfg.trials and cfg.channel, functions should get an option cfg.latency
• 746 - ft_defaults does not add multivariate toolbox
• 747 - cfg.design and design are both possible inputs in stat* functions
• 749 - ft_select_data does not plot interactive boxes when a singleplotTFR area is selected
• 750 - ft_selectdata should support toilim for raw data.
• 751 - command line options are not correctly parsed
• 752 - udsserver fails to start on max os x
• 753 - ft_prepare_sourcemodel changes
• 754 - trialfun_general in line 126 behaves strange ...
• 755 - rename coordinates in ft_volumewrite by coordsys
• 756 - watchdog is not properly enabled in peerslave cmdline executable
• 757 - ft_volumesegment smoothes anatomy when creating a scalp mask
• 758 - confusing comment in ft_volumewrite
• 759 - procedure of event-related averaging tutorial does not show the real order how functions are used
• 760 - ft_sourcegrandaverage uses .dim field
• 761 - test the ft_databrowser_new implementation
• 762 - ft_connectivityplot should support multiple input data with different functional parameters
• 763 - low level helper functions for csd2transfer are missing in repository
• 764 - ft_multiplot_CC shouldn't have a default layout
• 765 - singleshell head model should foresee a smoothing function
• 766 - the tutorial documentation of the headmodel needs a good review
• 767 - get uniform definition of segmented compartments
• 768 - peermaster allowhost should not be case sensitive
• 769 - improve answer to faq
• 770 - allow ft_volumerealign to work with arrow-keys
• 771 - ft_read_mri should behave consistent w.r.t. transformation matrix
• 772 - cannot topo- and multiplot neuromag data
• 773 - ft_compute_leadfield: cfg.pos as Nx3 and reducerank='yes' gives wrong results
• 774 - Realtime motion monitoring in MRI fails
• 775 - unclear documentation of ft_dipolesimulation.m
• 776 - examine the plot2svg plugin for matlab
• 777 - volume conductor tutorial figure is incorrectly shifted upwards
• 779 - ft_multiplotER : the sensors are out of the schematic head
• 780 - filter instability
• 781 - Incorrect memavail reading peerslave command line executable
• 782 - Bug in ft_connectivityanalysis
• 783 - montecarlo p value should never be zero
• 784 - UI update to ft_rejectartifact
• 785 - ft_volumesegment is giving me an error message
• 786 - ft_componentanalysis fails to output correct mixing matrix when using dss
• 787 - wiki pages exported to pdf do not include svg graphics
• 788 - recompile src/ft_getopt.c on linux 32+64 and windows 32+64
• 789 - peerslave crashes on startup
• 790 - UI improvements to rejectvisual_summary
• 791 - funcolorlim not correctly assigned with default in ft_sourceplot
• 792 - ft_preproc_polyremoval gives round off problems
• 793 - tweet wiki edits
• 794 - ft_preprocessing does not find 'offset' field
• 795 - ft_databrowser (and _new) fail when no cfg is present in data
• 796 - implement support for yokogawa440 system
• 798 - ft_freqstatistics fails on old input data (reported by Yoni)
• 799 - Bug with specifying channel combinations for Granger causality
• 800 - Create and optimize templates for neighbourselection
• 801 - ft_senslabel does not recognize yokogawa160 again, but instead finds yokogawa440(_old_planar)
• 802 - instantaneous causality is broken
• 803 - nan support in ft_connectivity_corr breaks functionality
• 804 - some MEG channels do not have correct coil positions and orientations
• 805 - yokogawa440 layout should be reconstructed
• 807 - fiducial positions in ctf share are inconsistent with the shape itself
• 808 - ft_transform_geometry does not apply the transformation to an anatomical MRI
• 809 - Suggestion: Let neighbourselection calculate distances for neighbours
• 810 - mtmwelch is not supported adequately
• 811 - implement spm2ft converter function
• 812 - ft_defaults sometimes takes very long to execute
• 813 - routlm, an accessory routine to project electrodes, is not available out of the src folder
• 814 - artifact tutorial (visual) should mention ft_databrowser
• 815 - svg figures on distributed computing tutorial don't show correctly
• 816 - improve the tweets of the svn changes
• 817 - Error when attemping read_sbin_events on a file without events
• 818 - If no layout is given, it could be estimated using ft_senstype(data)
• 819 - ft_getopt.mexw64 depends on MSVC 2010 dll
• 820 - cfg.vol should not be required input to ft_sourceanalysis
• 821 - read_combined_ds (fileio/private) calls read_data, rather than ft_read_data
• 822 - ft_connectivityanalysis seems to fail on powandcsd in input (ft_selectdata issue, I suspect upon averaging/channel subselection)
• 823 - ft_connectivityanalysis / ft_freqdescriptives don't seem to do jackknife anymore
• 824 - add 4D-gradiometer dataset to the test datasets
• 825 - mutexlock in combination with outputfile fails in ft_freqanalysis when ft_checkconfig is strictly removing unused cfg options
• 826 - original svg figures cannot be downloaded on wiki
• 827 - ambiguity in x/y dimensions when topoplotting chan_freq data
• 828 - svg figures don't work in internet explorer
• 829 - make nice print stylesheet for wiki pages
• 830 - ft_databrowser vertical rescaling does not work
• 831 - deprecate cfg.xparam/yparam in plotting functions
• 832 - rename cfg.zparam in plotting functions into cfg.parameter
• 833 - minimumnormestimate should work with lambda in an interpretable range
• 834 - ft_checkdata with cmbrepresentation fullfast should lose cumtapcnt and cumsumcnt
• 835 - coherence tutorial should use fourier in freqanalysis, rather than powandcsd
• 836 - ft_componentanalysis crashes with method='fastica' and MEG data in input
• 837 - Create a FAQ about the databrowser
• 838 - ft_selectdata crashes when avgoverfreq on single freq data
• 839 - documentation on manual artifact detection needs to be adjusted
• 840 - resample error
• 841 - use consistent british or american english throughout
• 842 - bugfix for rejectvisual_summary
• 843 - cfg.matrixside seems relevant but not mentioned in documentation
• 844 - if cfg.montage is specified in ft_preprocessing, it is only applied to the data
• 845 - ft_appenddata incorrectly initializes the output sampleinfo always to be empty
• 846 - could we make ft_freqgrandaverage to support 'chan' dimord?
• 847 - cfg.design not in help comments of ft_freqstatistics
• 848 - identify channel function is broken in ft_databrowser
• 849 - convention of 'directionality' in spectral transfer function is swapped wrt the other connectivity metrics
• 850 - ft_checkdata gets confused with mtmconvol input and fourier
• 851 - freqstatistics has a problem with singular dimensions in freq field?
• 852 - freqstatistics has a problem reshaping my data?
• 853 - artifact marking does not work in ft_databrowser butterfly viewmode
• 854 - ft_databrowser does not respond to numpad keys
• 855 - ft_artifact_zvalue should support in-memory data with no cfg.trl specified
• 856 - allow user to specify critical time window for ft_reject_artifact
• 857 - ft_databrowser crashes
• 858 - Problem with megplanar on CTF 275
• 859 - .lay for BrainCap 64ch MR-compatible EEG cap not in templates
• 860 - ft_neighbourplot crashes
• 861 - ft_volumesegment with cfg.write = 'yes' writes the wrong transformation matrix to the files
• 862 - fixsampleinfo does not recreate sampleinfo if trialdefinition is inconsistent
• 863 - megplanar followed immediately by combineplanar does not work
• 864 - megplanar computes a value for all sensor in the neighbourhood structure, independent of whether they are actually in the data
• 865 - ft_appendfreq should not call checkdata with hassampleinfo
• 866 - ft_neighbourselection outputs non-optimal neighbour structure
• 867 - compiled ft_getopt fails on mentat 274
• 868 - ft_neighbourselection miss sensors after ft_rejectcomponent
• 869 - compiled nanXXX fail when using a low matlab version
• 870 - fix text display bug in ft_multiplotER with multiple datasets
• 871 - add axes to summary plot in ft_multiplotTFR
• 872 - implement and test statfun_glm
• 873 - Sine taper doesn't work in ft_specest_mtmconvol
• 874 - clean up your buglist
• 875 - add gray and yellow to colorscheme
• 876 - improve the documentation on handling the artifacts in the data
• 877 - fix layout of automatically generated lists of recommended reading etc
• 878 - give Elli svn access
• 879 - add channel position to the grad structure
• 880 - layout file info on wiki does not specify reference frame for X- and Y-coordinates
• 881 - singleplotTFR fails when the input contains both pow and crsspctrm
• 882 - facilitate the editing and updating of SVG figures on the wiki
• 883 - bdf files persisting in memory
• 884 - ft_read_event adds the undefined and nonstandard urevent
• 885 - compiled ft_getopt fails when the input is a config object
• 886 - ft_read_mri requires SPM8 toolbox
• 887 - help of ft_determine_coordsys could be improved
• 888 - ft_freqstatistics requires cfg.neighborhood when dimord = 'freq_time'
• 889 - delete the mex-files for keyval
• 890 - create mat-files for the mostly used acquisition systems to better reflect the features of the channel positions/ outline
• 891 - ensure that the test-directory in /home/common/matlab/fieldtrip/forward/ exists
• 892 - ft_freqstatistics should give meaningful error in case default cfg.parameter is not available
• 893 - freqstatistics fails for fourier input data with a rpttap in the dimord
• 894 - statfun_indepsamplesZcoh requires an undocumented cfg.label
• 895 - the output dimord of ft_freqstatistics should be chancmb in case of a bivariate statistic (e.g. coherence)
• 896 - plotting of coherence statistics witg ft_multiplotTFR fails
• 897 - rename tests directory into "test"
• 898 - ft_databrowser does not draw layout correctly when layout is taken from .mat-file
• 899 - senstype does not recognize eeg datastructure
• 900 - ft_determine_coordsys gives an error when mri.coordsys = 'spm'
• 901 - add related FAQ's and related example scripts to the end of the tutorials
• 902 - organize tags
• 903 - cfg.numcomponent fails most methods in ft_componentanalysis
• 904 - cfg.numcomponent fails for method=dss in ft_componentanalysis
• 905 - indexing out of range depening on trial-specific number of tapers
• 906 - ft_senstype does not recognize the type of sensors for some of the data on /home/common
• 907 - test_ft_preprocessing fails to return identical results for .edf and .bdf
• 908 - /home/common/matlab/fieldtrip/data/test/raw/lfp/preproc_neuralynx does not exist
• 909 - test_ft_preprocessing fails on plexon data
• 910 - test_ft_preprocessing fails on 'tdt data
• 911 - add memtic/memtoc to all fieldtrip functions
• 912 - move clever handling of names of balancing structures to ft_apply_montage
• 913 - ft_connectivityanalysis gives inaccurate user feedback when doing npsf with cfg.channelcmbs
• 914 - qsubcellfun should use proper working directory and meaningful job IDs
• 915 - layout units and scaling should be consistent
• 916 - read_eep_cnt does not work under linux 32bit
• 917 - inconsistent and missing versions for ft_getopt mex files
• 918 - compatibility issue with matlab2011a
• 919 - compile getpid.c for different platforms and add to repository in appropriate way
• 920 - ensure walltime is in a format that qsub can understand
• 921 - selecting freq parameter fails in ft_selectdata
• 922 - 2 automatic artifact detection site
• 923 - analysis of connectivity tutorial 2 times
• 924 - ft_denoise_synthetic does not have ft_checkconfig with trackconfig=on
• 925 - ft_freqcomparison documentation is not clear
• 926 - ft_xxxplot functions should be made more consistent with their return value
• 927 - ft_prepare_femmodel should be removed
• 928 - ft_spiketriggeredinterpolation assigns cfg.callinfo at the end, but the variables are not set at the beginning
• 929 - xxx2fieldtrip function user interface should be made more consistent
• 930 - test_ft_preprocessing fails for yokogawa160
• 931 - ft_appendfreq fails when the data does not exactly overlap
• 932 - ft_freqstatistics fails on old input data (again)
• 933 - Fieldtrip buffer stops and freezes Matlab
• 935 - implement qsublisten function
• 936 - make sure qsubexec's output becomes available in an atomic operation
• 937 - ft_prepare_mesh inconsistencies and restructure suggestion
• 938 - Create a development page about the reorganization of the FWD module
• 939 - determine the status of project http://fieldtrip.fcdonders.nl/development/halfspace
• 940 - confusing *intended* error appears in GdfWriter.h
• 941 - ft_channelrepair doesn't reconstruct channel well
• 942 - ensure consistent structure of the main ft_functions
• 943 - improve user-interface to ft_artifact_zvalue
• 944 - deprecate some old artifact functions
• 945 - non-parametric spectral factorization can be sped up substantially
• 946 - ft_appenddata reportedly fails to concatenate trialinfo and sampleinfo (even when that is possible)
• 947 - ft_neighbourselection help suggests you can use any cfg.layout
• 948 - test_ft_megplanar does not work
• 949 - ft_megplanar fails for method sourceproject
• 950 - ft_megrealign does not properly take balancing into account
• 951 - the main plotting functions have inconsistent return values
• 952 - functions that return cfg should check on nargout
• 953 - the channel type and the physical units should be the output of ft_read_header
• 954 - bug in ft_prepare_singleshell in fieldtrip version 20110911
• 955 - move source code for vista mex files to fieldtrip/src
• 956 - waittime error
• 957 - ft_volumewrite should not be called in leadfield_fns
• 958 - what happens if simbio is not available or if the computer is a pc?
• 959 - add the compilation instructions for the vgrid binary
• 960 - rename statistics_montecarlo and such into ft_statistics_montecarlo
• 961 - new config option confusion in ft_artifact_ecg
• 962 - remove default cfg.demean = 'yes' in ft_componentanalysis
• 963 - neuromag data units should be reflected in the grad structure and ft_convert_units
• 964 - prepare_mesh_segmentation and cfg.tissue
• 965 - ft_hastoolbox is used for compat, but it does not detect compat correctly
• 966 - minor multiplotER bug with timing code
• 967 - move functionality of instantaneous causality and total interdependence into ft_connectivity_granger
• 968 - loadvar inconsistently throws errors, which are resolved if called again
• 969 - ft_volumerealign interactive gui doesn't show "R" & "L" indicators
• 970 - the option cfg.fixedori does not work for the beamformer_pcc
• 971 - ft_sourcedescriptives does not understand the option 'method' anymore
• 972 - ft_topoplotER is inconsistent w.r.t. xparam
• 973 - check and correct the incongruencies between units names
• 974 - add qstat and qdel to qsubcellfun documentation
• 975 - ft_freqanalysis should support variable number of tapers per trial for cfg.method='mtmfft'
• 976 - round-off issues lead to unexpected behavior of ft_specest_XXX
• 977 - make memreq and timreq required options in qsubcellfun
• 978 - display the job number in case an error is detected in the stderr log output
• 979 - mtmfft: cumtapcnt doesn't support variable number of tapers
• 980 - ft_prepare_vol_sens loses vol.unit along the way
• 981 - ft_headmodelplot doesn't work with a multisphere volume conduction model in the input
• 982 - headsurface and head_surf seem to have largely overlapping functionality
• 983 - Change ft_neighbourselection to ft_prepare_neighbours
• 984 - Update wikipage on new function name for neighbourselection
• 985 - ft_chantype does not recognize headcoil sensors as such
• 986 - write a wrapper for simbio binaries
• 987 - make ft_selectdata test script
• 988 - ft_topoplotER needs a .freq field to function
• 989 - there seems to be a problem in selectdata in that the underlying dimlength does not recognize a .stat field.
• 990 - Incompatibility of new function ft_prepare_neighbours?
• 991 - integrate twitterticker nicely into wiki layout
• 992 - remove dependency of qsubfeval/qsubget on intermediate script files
• 993 - the different coordinate systems should be better documented in headcoordinates.m and the documentation to ft_volumerealign should be improved
• 994 - tweet posts to mailing list
• 995 - ft_topoplotCC should use strcmp instead of strmatch
• 996 - ft_singleplotER and ft_ft_multiplotER do not plot multiple datasets
• 997 - Temporary fix in prepare_mesh_segmentation ruins the triangulation
• 998 - Convert FT tutorials into testing functions
• 999 - sourceinterpolates sets default projectmethod to 'linear' while such a method does not exist
• 1001 - ft_plot_headshape redundant?
• 1002 - ft_prepare_headmodel has repeating code
• 1003 - feature: use ft_headmodelplot without grad/elec
• 1004 - XXX2grad functions should convert to new sensor representation directly
• 1005 - parameter in sourceinterpolate is a string by default whereas the function expects a cell-array
• 1006 - sourceanalysis breaks on checkconfig?
• 1007 - no elec.pnt in the new version (03/10/2011) of channelposition.m
• 1008 - change cfg.frequency to cfg.foi in ft_sourceanalysis
• 1009 - ft_plot_topo fails on line 196
• 1010 - layout of subplots in ft_topoplotER
• 1011 - ft_appenddata using the 'new' source representation?
• 1012 - random seeding is incorrect when using the local scheduler in qsubfeval, rand returns the same number
• 1013 - hassampleinfo fails on a timelocked structure with trials
• 1014 - appendtimelock fails if the input contains avg and trial
• 1015 - ft_rejectvisual zvalue button seems not to display a z-value
• 1016 - ft_read_mri fails to return a correct volume structure when not using spm for reading analyze files
• 1017 - ft_volumerealign breaks when you click outside of a plot
• 1018 - ft_artifact_zvalue/clip require a cfg.trl and don't use data.sampleinfo
• 1019 - implement ft_movieplotTFR
• 1020 - read memory error during acquisition
• 1021 - sort out all the appenddata/time/freq/source and ft_selectdata bugs
• 1022 - test_bug228 need to be finalized or deleted
• 1023 - rename headmodel_strip into headmodel_slab
• 1024 - the documented defaults in the ft_specest functions are inconsistent with the implemented defaults
• 1025 - inconsistent number of tapers
• 1026 - ft_checkconfig>checksizefun error.
• 1027 - Error when running artf rejection with unequal trial lengths
• 1028 - ft_compute_leadfield should use warning_once
• 1029 - fix inconsistent naming of forward solutions
• 1030 - fixsens should not be made conditional on the sens definition
• 1031 - qsubcellfun uniformoutput=1 does not work
• 1033 - implement a consistent way to return help (or an error)
• 1035 - ft_multiplotER fails because the automatic layout is not correct
• 1036 - make ft_sourcemovieER, *TFR, ft_topomovieTFR, *ER
• 1037 - move code in ft_topoplotER to ft_topoplotTFR and let *ER call *TFR
• 1039 - re-rename ft_rejectconfound to ft_regresscounfound
• 1040 - ft_prepare_sourcemodel cannot find potential inside dipoles...
• 1041 - ft_freqdescriptives needs NaN amount of RAM
• 1042 - leadfields do not scale appropriately with the conductivity
• 1043 - channelposition.m about line 73: subesequent code to FIXME fails Yokogawa systems
• 1044 - MNE does not work smoothly in the context of singletrial/rawtrial
• 1046 - add explicit check for cfg.correctail = 'yes' in statistics_montecarlo
• 1047 - add a FAQ for cfg.correcttail and cfg.alpha in statistics_montecarlo
• 1048 - ft_sourcedescriptives handles cfg.inputfile wrongly
• 1049 - statistics_montecarlo requires cfg.dim, but I cannot find information what dim should/can be
• 1050 - fixsens should be replaced by ft_datatype_sens
• 1051 - fixsens breaks on data that has coilpos & coilori but NO coilpos
• 1052 - fixsens breaks on EEG data
• 1053 - fixsens breaks on EEG data
• 1054 - channelposition crashes for sens from layout neuromag306all.lay because of missing.tra
• 1055 - ensure that ft_neighbourplot internally uses the new-style elec/grad and not the old one
• 1056 - move ft_spike* functions to fieldtrip/contrib/spike
• 1057 - ft_freqanalysis_mvar is not documented itself, nor listed in ft_freqanalysis
• 1058 - ft_prepare_neighbours misses header script
• 1059 - create example script of regressing out headposition confounds
• 1060 - biosemi layouts have wrong&double labels
• 1061 - ft_topoplotER calls itself recursively instead of topoplotTFR
• 1062 - ft_chantype does not recognize neuromag 306 system
• 1063 - ft_connectivityanalysis does not remove the autocombinations properly anymore when computing bivariate granger
• 1065 - ft_topoplotER: error in script ft_plot_topo.m
• 1066 - update wiki and/or comments in ft_componentbrowser_old to plot components using new databrowser
• 1067 - sourcedescriptives should support cfg.trials if possible or warn the user
• 1068 - ft_read_mri causing a system error
• 1069 - singleplotTFR cannot plot mask of 1xNxM
• 1070 - Reshape problem in ft_freqanalysis (line 587)
• 1071 - suggestion: sourcegrandaverage could support a cfg.roi for subselecting a brainregion of interest
• 1072 - the 'geometry' input field is inconsistent across forward models
• 1073 - TIP of the Day: "Do you know..." any?
• 1074 - for discussion in the FT meeting
• 1075 - ft_prepare_singleshell doesn't work
• 1076 - resolve the indx input argument that is used in ft_topoplotTFR
• 1077 - implement a general documentation structure for guidelines
• 1078 - all functions that use cfg.elec, cfg.elecfile or get it out out of the data should be consistent
• 1079 - the cfg parsing of ft_multiplotTFR fails
• 1080 - fixneighbours should be solved only once - in ft_checkconfig
• 1081 - ft_read_header.m eyelink ascii 2000Hz data reading error
• 1082 - the sign of OM lead fields and singlesphere seems to be inverted
• 1083 - remove nested functions and use normal functions instead
• 1084 - I came accross ft_freqanalysis_tfr in the fieldtrip main folder...
• 1085 - vol.skin and vol.skin_surface are not consistent across head models functions
• 1086 - time-frequency tutorial on the wiki is empty
• 1087 - replace simplefft in databrowser by a call to a browsefun
• 1091 - the alldist variable in ft_prepare_neighbours/compneighbstructfromtri seems to be unused
• 1093 - Artifacts are still rejected after increasing zscore threshold in interactive mode
• 1094 - header caching for read_biosig_data.m
• 1096 - the documentation in ft_singleplotTFR for the directionality option should be revised
• 1097 - discuss the remove flag in ft_redefinetrial, possibly reimplement
• 1098 - the ft_qualitycheck reference documentation needs to be improved
• 1100 - the varargin and varargout of ft_denoise_pca should be properly documented
• 1101 - for discussion in the FT meeting
• 1102 - clarify output structure of ft_connectivityanalysis
• 1103 - 'linear' option missing in interp_ungridded
• 1105 - add ft_preamble and ft_postamble to ft_neighbourplot
• 1106 - add ft_preamble and ft_postamble to ft_conjunctionanalysis
• 1108 - extend/replace ft_spikesimulation and add an example to the tutorial
• 1109 - replace/update ft_spikesimulation, and add an example to the tutorial
• 1110 - ft_postamble attempts to address 'cfg' in fieldtrip2spss while this variable is never put in or created
• 1111 - ft_freqgrandaverage doesn't output a dimord
• 1113 - remove all old Log messages by the SVN Id
• 1115 - ft_headmodel_concentricspheres fails
• 1116 - ft_prepare_headmodel incorrect handling of defaults
• 1117 - SAM issue
• 1119 - Other Sam issue
• 1121 - ft_prepare_headmodel singleshell method does not work
• 1124 - SVN checkout hangs after about 20 files are checked out.
• 1125 - remove DC offset prior to time-domain filtering in ft_preproc_*filter
• 1126 - change handling of the mixing and unmixing matrix in ft_componentanalysis
• 1129 - implement firls filter and change default order of fir1 to 200
• 1132 - check that ft_datatype_sens is consistently used and replaced by ft_checkdata/-config where possible
• 1133 - neighbourplot does not plot neuromag306 layout&neighbours correctly
• 1134 - defaults for forward headmodel functions should be specified at the low level
• 1136 - ft_checkconfig could support 'custom' error messages
• 1137 - cellfun problem in sourcedescriptives
• 1151 - test_ft_preprocessing fails on assert, when k=9
• 1158 - Wrong channeighbstructmat in newer ft versions
• 1237 - ft_getopt fails on windows 64-bit systems
• 1264 - Revive automated testing
• 1352 - implement tia server and client interface as alternative to fieldtrip buffer
• 1364 - rda2ft converts a 'S 1' simulus into an int32 -1 value
• 1394 - Clean up structure of realtime dir
• 1418 - ft_selectdata_old fails on output of ft_connectivityanalysis when called as: selectdata(data,'channel',chansel)
• 1525 - misalignment of sample number between event and data
• 1536 - ft_getopt fails on windows 64 bit
• 1573 - GrandAVG and Stats can't be plottet on anatomy or be interpolated on an MRI
• 1638 - Install the realtime head localizer in Frankfurt
• 1774 - bug binge on 10 October 2012
• 1775 - implement ft_sourceparcellate function
• 1794 - ft_prepare_leadfield output discrepancy between cm and mm units for predefined grid
• 1799 - ft_prepare_leadfield fails due to infinite loop in
• 1938 - some small improvements to ft_analysispipeline
• 1977 - unexpected interaction between masking and the handling of nan values
• 2247 - there is no correspondence resulting from the modification
• 2267 - examples do not work
• 2365 - Fourier output of time-frequency methods (mtmconvol, wavelet) does not work with variable-length trials
• 2751 - remove spam from fieldtrip wiki
• 2835 - bug binge: diagnose and/or fix broken testscripts that were still working recently
• 2948 - migrate external FieldTrip SVN away from google code
• 3154 - Elekta MEG channel selection broken
• 3412 - imotions2fieldtrip fixtime = 'squash' not robust for missing values