Mac OS

Back to the main page.

• 2 - megplanar fails on TFR input data
• 3 - incorrect detection of senstype and inconsistent grad.type after megplanar
• 5 - ft_freqdescriptives does not work for defined time and frequency bins
• 6 - add cfg.inputfile and cfg.outputfile to all fieldtrip functions
• 7 - inconsitent absmax and maxabs for the scaling
• 19 - the length of a vector is sometimes used, whereas numel is more robust (before/after vectorization)
• 20 - the help documentation in ft_preprocessing does not follow the guidelines
• 27 - ensure consistent time axes in ft_resampledata (without rounding errors)
• 28 - ensure consistent handling of offset/time/trl
• 29 - fix subspace projection in beamformer_dics and beamformer_lcmv
• 30 - fix read_mri
• 36 - ft_channelcombination should check for auto-combinations in the input...
• 37 - ft_connectivityanalysis crashes when input is powandcsd and channelcmb = {'all' 'all'}
• 42 - maxNumCompThreads not available on all matlab versions
• 43 - small bug using ft_topoplotER with combined EEG+MEG
• 48 - warning off should always revert to previous warning state
• 51 - bug in for-loop for plotting electrode numbers in ft_topoplotER
• 52 - old reading functions should be moved to compat folder
• 54 - separate conversions and fixes from checkdata
• 58 - another test bug
• 61 - this is a test bug
• 62 - spm_brainwarp is missing from fieldtrip/external/spm2
• 65 - cfg.headerformat and dataformat should be supported in all ft main functions that read datathat
• 68 - double presence in svn, both file and external
• 69 - publix/sourcerestyle and public/private/fixsource are replications
• 70 - rank-reduction of leadfield is not supported for openmeeg
• 73 - there is a number of functions that calls read_header without passing the user-specified headerformat along
• 74 - inconsistent use of cfg.eventfile and cfg.event
• 81 - missing private functions in fieldtrip/inverse
• 82 - volumewrite_spm should go into fileio
• 83 - flipped volume in ft_volumesegment
• 88 - FILE-IO EDF+ and BDF file reading
• 92 - problem reading *.mnc file
• 93 - duplicate ft_plot_topo and plot_topo
• 94 - cfg.outputfile is incompatible with cfg.trackconfig=cleanup
• 95 - merging ft_default.trackconfig and cfg.trackconfig fails
• 97 - if the user specifies cfg.trials=[] this should result in no trials being processed. Now all trials are processed
• 98 - version tracking in high level ft-functions is backward compatible to pre matlab 6.5
• 108 - reading in of ctf-header with headerformat ctf_ds outputs a lot of stuff to the screen, making it slow
• 115 - ft_prepare_mesh not robust in dealing with inputfile
• 119 - plotting functions renamed without fixing the ft_ prefixes in the code
• 121 - selectdata with tf-data as input with avgoverfreq for a given foilim gives in the output xxx.freq which is not the average of the requested range
• 122 - ft_rejectartifact doesn't work with data in input when calling artifact_xxx
• 123 - statfun_depsamplesT and statfun_actvsbslT cannot manage nans
• 124 - different linestyles for multiple lines in the same plot
• 129 - non prefixed ft_xxx functions on wiki
• 130 - ensure robust behaviour for freqanalysis when user specifies both cfg.channel and cfg.channelcmb
• 134 - ft_spiketriggeredspectrum is broken due to new specest_nanfft
• 137 - implement udpserver
• 138 - loadvar and savevar shoudl default to a meaningful variable name and not to 'data'
• 139 - smartcpu is triggered simultaneously on multiple slaves that share a linux node
• 140 - busy peerslave should announce the memreq of the job instead of the memavail
• 141 - there should be a mechanism for logging the output of the command-line peerslaves
• 142 - peer should announce timavail=0 for zombie and master
• 143 - rename the rda2ft directory to brainamp
• 144 - peer slaves seem to switch to zombie while the master is sending a job
• 145 - documentation in peer.m should be more general introduction
• 146 - cmd line peerslave should use syslog() for output, instead of fprintf
• 147 - improve help in functions by linking to wiki documentation
• 149 - there is no way to cancel jobs that are submitted but not yet completed
• 150 - create a consistent implementation of the timers and timeout options
• 151 - cmd-line peerslave PANICs too easily
• 152 - pass global variables to peerslave
• 153 - implement refuseuser, refusehost, refusegroup
• 154 - add a description field in the host package
• 156 - Buffer MEX file does not convert 0-based to 1-based sample indices.
• 162 - fallback to cellfun if there are no slaves
• 163 - using sleep in a thread causes the whole process to sleep
• 164 - peercellfun sends private directories in path, slave gives warning
• 165 - random number generator initializes to the same value on every matlab startup
• 166 - fractional time in seconds is rounded off incorrectly
• 167 - peerlist is empty on stand-alone OS X computer
• 170 - use other toolbox license check
• 172 - trialfun_general crashes with cfg.trialdef.eventtype='gui'
• 174 - implement EDF and GDF format in ft_write_data
• 175 - mex files missing for read_16bit
• 177 - Missing (PowerPC) MEX files
• 178 - document cfg.inputfile and cfg.outputfile
• 179 - plotting problem with connectivityresults
• 180 - make ft_multiplotXXX and ft_topoplotXXX robust against subset of all channels in input, in case of connectivity data
• 181 - unknown method in ft_electroderealign
• 182 - ft_rejectcomponent cannot apply projection on grad.tra if nargin==2
• 183 - include job number in rethrown error inside peerget
• 197 - check which functions need to pass on trialinfo and sampleinfo
• 199 - ft_sourceanalysis with lcmv and precomputed filters and single trial input does not output a pow-field
• 203 - add ft_denoise_pca to the release of fieldtrip
• 204 - ft_freqanalysis crashes when specest implementation is used
• 205 - brain surface in BEM eeg should be called "inside skull"
• 206 - ensure consistent use ouf cfg.previous
• 207 - use tic and toc with an explicit timer name in sourceanalysis
• 208 - ft_ prefix inverse module
• 209 - volumerealign does not output the cfg that was used in the output mri
• 210 - ft_plot_slice and ft_plot_ortho should be written, probably also ft_plot_montage
• 211 - add new spike functions to fieldtrip main trunk
• 214 - the fieldtrip/private/triplot function is deprecated and should be replaced by ft_plot_mesh
• 215 - freqanalysis depends on the matlab function window, from the signal processing toolbox
• 217 - labelcmb2indx should be a private function
• 218 - add matlab version to output cfg.version
• 219 - change syslog output to avoid triggering hobbit/bb
• 222 - different methods are used for triangular mesh decimation
• 223 - peermaster and peerslave don't launch
• 225 - what's the effect of slow drifts in my data on my spectral decomposition?
• 227 - grids containing leadfields should contain a label to make the interpretation of the leadfield less ambiguous
• 228 - preprocessing option cfg.blc should be renamed
• 229 - ft_selectdata keyval 'rpt', [...] sorts the requested trials with fourier-input
• 238 - ft_plot_mesh should support plotting of colors that are dependent on the data
• 239 - ft_plot_slice default location of [0 0 0] fails
• 242 - consistent binary executables
• 243 - ft_headmodel_halfspace should be implemented for EEG
• 244 - ft_headmodel_singleshell should be implemented
• 245 - the forward module should be documented
• 247 - ft_clusterplot no longer works
• 248 - add mini-spm8 version to fieldtrip/external
• 249 - problem in local sphere handling
• 251 - documentation has to be anonimized
• 252 - checkconfig should be ft prefixed
• 253 - missing function in ft_connectivity_granger
• 257 - ft_freqanalysis_wltconvol, fourier not valid?
• 258 - improve support for plexon nex files
• 259 - the compilation procedure should be documented
• 260 - make realtime table complete w.r.t. bci2000 alternatives
• 261 - update the status of "work in progress" mentions
• 262 - consistent naming for tmsi
• 264 - the neuromag realtime interface needs to be documented
• 268 - remove peer from list in case open_tcp_connection error
• 269 - problem in printing job information
• 270 - add mex files and other code for controlling vnc server
• 271 - the use of matlabversion fails for 2010a and b because they are represented as 7.10 and 7.11
• 275 - timallow/timreq have to be made consistent on master and slave
• 277 - peercellfun resubmission should be improved
• 278 - implement MaxBusy option in peercellfun
• 279 - ft_ prefixes missing from the preproc documentation
• 280 - ft_ prefixes missing from the preproc documentation
• 292 - ft_freqanalysis does not work with variable length trials and method = 'mtmfft'
• 293 - source statistics on timeseries (source.mom) does not work
• 294 - there are idle slaves with timavail=0
• 295 - resubmitted jobs should be postponed, i.e. first submit all jobs once
• 296 - enginetimeout and zombietimeout should be configurable on the command line
• 297 - warning takes sprintf-like input directly
• 298 - create mex file implementation of keyval
• 299 - add persistent input variable checking to peer/private/getglobal
• 301 - ensure that the mex compile scripts are consistent throughout
• 302 - sourceanalysis fails due to ft_prepare_leadfield throwing away the data
• 303 - switching from zombie to ilde slave should be delayed, e.g. 5 minutes
• 304 - the user should be allowed to specify the variance of timreq
• 315 - fieldtrip/private/preproc() should be replaced by ft_preprocessing where possible
• 316 - the public functions should be ft_ prefixed
• 317 - hasyokogawa should be merged with ft_hastoolbox
• 318 - make list of functions for MNE integration
• 319 - de-mean spike snippet data prior to fft
• 322 - plexon nex with different sampling rate are incorrectly read
• 323 - read_plexon_nex incorrect for strobed channel with triggers
• 324 - ft_topoplotER errors with ft_timelockgrandaverage data (with proposed fix)
• 325 - statfun_depsamplesT units of observation issue
• 326 - jobs result in "resubmitting because engine takes too much time to start"
• 327 - engines are not efficiently reused
• 328 - ft_timelockgrandaverage should either output an average or individual data
• 329 - test for the new email address
• 330 - mintimreq should be user specified
• 331 - smartcpu should switch off the "smallest" peerslave first
• 332 - the sluggishness in the peerslave smartxxx estimates has to be reimplemented
• 333 - smartcpu switching is inconsistent
• 338 - ft_topoplotER is broken after the last change allowing for channel selection
• 339 - timelock data structure should not contain fsample
• 340 - dipole data structure should be described
• 341 - multivariate documentation should be made consistent
• 342 - ft_voltype documentation should contain a list of types
• 344 - ensure consistent handling of balancing throughout the code
• 346 - statfun_xxx documentation should include explanation that ft_xxstatistics should be called
• 347 - mailing list archive only contains mails starting from december 2010
• 349 - don't understand a few lines in ft_volumerealign
• 350 - flipdim problems in beamformer tutorial need to be fixed
• 351 - exercises should be reformatted
• 352 - after switching the warning off, it should be switched on again
• 353 - ft_sourcegrandaverage should work with source datatypes only
• 363 - Johanna does not have her own bug list at the bottom
• 364 - tutorial/eventrelatedaveraging matlab data missing from ftp server
• 365 - testdata/mri directory does not contain any files
• 366 - pos2dim3d behaves as if it is pos2dimNd
• 367 - megrealign example does not work
• 370 - private/prepare_time_freq_data calls fixdimord
• 371 - check whether keepoutside can be removed from ft_checkdata
• 375 - tutorial data directories on ftp server should be made consistent with tutorials
• 378 - rename killswitch into watchdog
• 379 - help ft_freqanalysis
• 380 - implement ztransform/standardize in rejectvisual
• 381 - ft_write_volume should support nifti
• 382 - peerslave syslog output is inconcistent in case of error (job number seems to increment)
• 383 - selecting a subset of trials from source data (pcc mom) does not work
• 384 - unpredictable crashese during peer computing
• 386 - reimplement source2sparse and source2full for the new source representation
• 387 - broken link to walkthrough.pdf
• 397 - move private/prepare_dipole_grid to ft_prepare_sourcemodel in main directory
• 398 - the function isstr is still being used, although it is deprecated by matlab
• 399 - Bug with estimating power of Nyquist freq with ft_specest_mtmfft.m
• 400 - ft_specest_wavelet: fsample calculation does not produce integer
• 401 - update publications list on wiki
• 402 - too many warnings on sampleinfo field when converting ERF into raw data structure with 1 trial
• 403 - ft_specest_wavelet throws many warnings
• 404 - output to screen by specest functions should be made optional
• 406 - fieldtrip course tuebingen - scaling during mtm 'sine'
• 407 - provide hyperlinks between tutorials
• 412 - correcttail option in montecarlo has incorrect default
• 413 - add eeglab2fieldtrip to the fieldtrip/external/eeglab directory
• 419 - singleplotTFR is not robust
• 420 - please address the issues below
• 421 - ft_preproc_bandstopfilter uses range() from the stats-toolbox
• 422 - the watchdog should also allow for monitoring the memory usage
• 423 - wiki software needs to be updated
• 425 - using trackconfig = 'on' does not work robustly
• 427 - color labels of the lines don't display correctly when using multiplotER with multiple inputs
• 428 - ft_multiplotER is very slow
• 429 - ft_electroderealign fails with cfg.method = interactive
• 433 - improve search option on mailing list
• 436 - ft_rejectvisual makes inefficient (or no?) use of ft_checkdata
• 437 - discuss the online EEGLAB course
• 438 - ft_checkdata should get siblings like ft_checkraw, ft_checkfreq, ft_checksource, ft_checkvolume
• 449 - improve the release procedure on the ftp server to avoid many zip files that are the same
• 450 - the data stored in /home/common/matlab/fieldtrip/data/tutorial needs to be updated
• 451 - ft_multiplotXXX and ft_singleplotXXX should be cleaned up
• 452 - cpompat functions are being called by trialfun_xxx
• 453 - the faqs on artifacts should be indentified and tagged
• 454 - figures on visual artifact tutorial should be smaller
• 455 - determine whether ft_componentbrowser can be removed
• 457 - coherence tutorial problems because of label and labelcmb fields
• 459 - potential error in the use of preprocessing
• 461 - documentation points to pdf
• 462 - there's mixed usage of the nanXXX and nan_XXX throughout the code
• 463 - ensure that all linked wiki pages exist
• 464 - ft_freqbaseline looks outdated and inefficiently implemented
• 465 - problem with labels in topoplotIC after pca
• 466 - check dependencies for matlab datasource functions
• 467 - EGI GSN electrode templates conflict with ft_senstype/ft_senslabel
• 468 - statistics_montecarlo / statfun_indepsamplesF behaves strangely...
• 470 - some junk in the multivariate directory needs to be removed
• 471 - fix the inside detection for a dipole grid in case of a halfspace model
• 472 - Matlab crashes after call to ft_write_data
• 473 - fix the svn:externals for peer and openmeeg
• 474 - too many file externals in fieldtrip/private
• 475 - ft_inside_vol should be used instead of find_inside_vol
• 477 - implement an ft_examplefunction function
• 478 - implement an svn hook to replace the svn externals
• 479 - ft_singleplotTFR: coherence data with labelcmb field will not plot
• 480 - label, labelcmb, channel, channelcmb confusion/problems?
• 481 - the tutorial datasets have to be anonimized
• 483 - Re: [FieldTrip] FT doesn't close .fif files
• 486 - implement getopt, setopt and checkopt fiunctions
• 489 - savevar (i.e. cfg.outputfile) should use an uncompressed format if the variable is small
• 492 - consider adding more social network features to the wiki
• 493 - google search results for "fieldtrip" are much worse than they used to be
• 494 - Problems reading events with ft_read_event
• 501 - implement a movieplot function for MNE source reconstructions
• 502 - replace keyval by ft_getopt
• 503 - compile some of the missing mex files on win32 and win64
• 504 - cfg.method='glm' in help ft_freq/timelock/sourcestatistics
• 505 - p waarden > 1 met freqstatistics
• 506 - Suggestion for reading gdf events
• 507 - Boxes masking data lines with multiple datasets
• 508 - ft_singleplotER: box sizes of mask do not adapt with ylim.
• 510 - spm not added to path (for call to spm_bwlabel)
• 517 - Subject0x.ds datasets are not completely anonymous
• 519 - databrowser expects a topo from the input, which fails when reading from file
• 522 - layout of exercise 3 in the TFR tutorial is ugly
• 523 - strange problems in a sourceanalysis pipeline
• 524 - check transformation matrices before and after writing and reading freesurfer MRIs
• 530 - check description of design matrix conditional on required statfun
• 531 - ft_freqanalysis does not work properly with mtmconvol and 'keeprpt' = 1
• 533 - implement RetryOnError
• 535 - can't use ft_singleplotTFR on wavelet/mtmconvol powandcsd data
• 536 - ft_connectivityanalysis does not accept wavelet/fourier input
• 537 - ft_freqanalysis should error with cfg.output='fourier and cfg.keeptrials='no'
• 538 - ft_freqstatistics errors on connectivity data made from fourier data with dimord chan_chan
• 539 - svn sync to sourceforge fails
• 541 - try-catch construction incompatibe with matlab74
• 543 - implement coordinate transformation for itab system
• 544 - implement cfg.downsample for ft_volumesegment
• 545 - ft_selectdata should support toilim for source input
• 551 - add another google search button
• 558 - ft_sourceanalysis does not seem to handle cfg.lambda
• 573 - improve event handling for neuroscan cnt and eeg formats
• 576 - timelock_neuromag122 seems to contain data from a 306-channel system
• 577 - Bug in the identification of channels to use for repairing a bad channel
• 579 - ft_checkdata can get the wrong dim with length() on line 761; use size() instead
• 581 - peercellfun should only print "updated timreq/memreq" immediately before submitting a new job
• 583 - ft_selectdata probably has difficulties if nrpt/nsubj is equal to any of the other dimlengths.
• 584 - Hilbert transform with output 'angle' gives output < -pi and > pi
• 594 - yokogawa trigger channels are not correctly detected
• 595 - reading a few channel from an sqd file is very slow and takes too much memory
• 596 - plotting of events in ft_databrowser is broken
• 597 - channel labels in meg160 software user-interface start with "000" and not with "001"
• 598 - the description on http://fieldtrip.fcdonders.nl/external needs and update
• 599 - problems with lfp test data on /home/common
• 600 - ft_singleplotTFR: mask is not set properly
• 604 - introduction tutorial should follow the documentation guidelines
• 605 - analysis protocols tutorial should be merged with the introduction tutorial
• 606 - scripting tutorial should follow the documentation guidelines
• 607 - preprocessing tutorial has to be restructured
• 608 - eventrelatedaveraging should follow the documentation guidelines
• 609 - timefrequencyanalysis tutorial should follow the documentation guidelines
• 610 - coherence tutorial should follow the documentation guidelines
• 611 - beamformer tutorial should follow the documentation guidelines
• 612 - headmodel tutorial should follow the documentation guidelines
• 613 - eventrelatedstatistics tutorial should follow the documentation guidelines
• 614 - cluster_permutation_timelock tutorial should follow the documentation guidelines
• 615 - cluster_permutation_freq tutorial should follow the documentation guidelines
• 617 - plotting tutorial should follow the documentation guidelines
• 618 - layout tutorial should follow the documentation guidelines
• 619 - easycapXX-avg layouts have to be improved
• 620 - realtime tutorial should follow the documentation guidelines
• 629 - implementation problems with epoched egi_mff format
• 631 - reorganize the fieldtrip/template directory
• 641 - hastrialdef should be renamed into hassampleinfo in ft_checkdata
• 643 - maintaining the multicast list can be made conditional on the status
• 647 - create a fieldtrip/warp toolbox
• 648 - ft_uilayout and layoutgui should perhaps be merged
• 649 - ft_sourceplot option cfg.inputcoordsys should be deprecated
• 650 - user feedback in ft_sourceplot needs to be cleaned up
• 651 - the prepare_design function should be deprecated/removed
• 653 - trialfun_trial should be enhanced to also return the trigger code (if possible)
• 657 - multiplotTFR displays incorrect x-axis values
• 658 - Neuromag-306 data incompatible with ft_rejectvisual
• 659 - add tic/toc to all functions and include in output cfg
• 661 - ft_chantype needs to be updated to use the channel labels
• 662 - ft_megplanar should be made consistent with ft_neighbourselection
• 663 - ft_prepare_layout fails for yokogawa64_planar
• 664 - private/sensortype.m should be deprecated
• 667 - error in artifact detection tutorial
• 668 - ft_artifact_zvalue causes a steadily increasing memory use
• 675 - ft_freqstatistics errors with single-dimension data (avgovertime/chan/freq='yes')
• 676 - ft_appenddata should ensure consistent handling of sampleinfo etc when appending over channels
• 680 - bad axes plotting in ft_multiplotER
• 683 - ft_movieplot for Time-frequency analysis
• 684 - channelposition returns incorrect results on grad-structure in attached file
• 685 - warning_once should be copied into specest/private
• 686 - the input and output units of ft_compute_leadfield should be determined
• 688 - check the literature references for 2005-2007
• 689 - check the literature references for 2008
• 690 - check the literature references for 2009
• 691 - check the literature references for 2010
• 692 - check the literature references for 2011
• 693 - channelposition needs to be made robust.
• 697 - potential issue with ft_freqstatistics
• 700 - new dokuwiki release available: 2011-05-25 "Rincewind".
• 701 - ft_volumesegment skullstrip output is smoothed
• 702 - allow feedback to be turned off in ft_freqanalysis
• 705 - ftFuncTimer is missing in ft_connectivitysimulation
• 706 - ftFuncTimer is also not initialized in ft_mvaranalysis
• 707 - implement a ft_connectivityplot function
• 708 - re-implement ft_timelockstatistics
• 709 - create ft_connectivity_xcorr
• 710 - create faq on the representation of bivariate frequency domain data
• 711 - implement an interface to the graph analysis toolbox by rubinov/sporns/kötter
• 713 - implement support for Windaq data format
• 714 - make a mex implementation of nanmean, nanvar etc
• 715 - ft_sourceanalysis with method = pcc should pass on trialinfo
• 716 - ft_megrealign misbehaves when realigning
• 717 - ft_getopt does not return an output if the input is something else than a cell-array, a struct, or a config object
• 721 - patch for rejectvisual_summary.m to visually show which trl/chan were removed
• 722 - enable data cursor mode in rejectvisual_summary
• 723 - make ft_connectivityanalysis more robust to deal npsf
• 724 - ft_connectivityplot should take multiple inputs and plot them in 1 figure
• 725 - ft_connectivityplot should work in linearly indexed data
• 726 - issue with addressing default for smoothing in ft_volumesegment
• 728 - change to ft_channelselection in SVN commit 3548 breaks some wildcard functionality
• 729 - ft_checkdata -> fixcsd with 'sparse' -> 'full' flips the directionality with respect to convention
• 730 - ft_singleplotER crashes when called from ft_multiplotER with cfg.matrixside = 'feedforward'
• 732 - csd2transfer crashes on initialising some matrix when sfmethod = 'bivariate' and csd is not positive definite
• 734 - ft_sourceanalysis: method ='sam', does not work
• 735 - rename cfg.option cohrefchannel into refchannel
• 736 - rename the values in cfg.matrixside (plotting functions)
• 737 - warning on/off should always revert to the previous warning state at the end of the function
• 738 - ft_read_event and ft_read_data have to be made faster
• 739 - ismember is slow and should be replaced (if possible) by any(strcmp(...))
• 740 - representation of pdc and dtf with dimord 'chan_chan' should be consistent with granger
• 742 - incorrect handling of defaults in ft_freqanalysis
• 743 - using <code matlab> leads to very ugly exported pdf-files
• 750 - ft_selectdata should support toilim for raw data.
• 751 - command line options are not correctly parsed
• 752 - udsserver fails to start on max os x
• 753 - ft_prepare_sourcemodel changes
• 754 - trialfun_general in line 126 behaves strange ...
• 755 - rename coordinates in ft_volumewrite by coordsys
• 756 - watchdog is not properly enabled in peerslave cmdline executable
• 757 - ft_volumesegment smoothes anatomy when creating a scalp mask
• 758 - confusing comment in ft_volumewrite
• 759 - procedure of event-related averaging tutorial does not show the real order how functions are used
• 762 - ft_connectivityplot should support multiple input data with different functional parameters
• 763 - low level helper functions for csd2transfer are missing in repository
• 768 - peermaster allowhost should not be case sensitive
• 769 - improve answer to faq
• 770 - allow ft_volumerealign to work with arrow-keys
• 771 - ft_read_mri should behave consistent w.r.t. transformation matrix
• 776 - examine the plot2svg plugin for matlab
• 780 - filter instability
• 784 - UI update to ft_rejectartifact
• 786 - ft_componentanalysis fails to output correct mixing matrix when using dss
• 788 - recompile src/ft_getopt.c on linux 32+64 and windows 32+64
• 789 - peerslave crashes on startup
• 790 - UI improvements to rejectvisual_summary
• 791 - funcolorlim not correctly assigned with default in ft_sourceplot
• 792 - ft_preproc_polyremoval gives round off problems
• 796 - implement support for yokogawa440 system
• 797 - documentation on mex files needs to be updated
• 798 - ft_freqstatistics fails on old input data (reported by Yoni)
• 802 - instantaneous causality is broken
• 803 - nan support in ft_connectivity_corr breaks functionality
• 804 - some MEG channels do not have correct coil positions and orientations
• 805 - yokogawa440 layout should be reconstructed
• 806 - multiplotER with interactive does not open all windows in the same position/size
• 807 - fiducial positions in ctf share are inconsistent with the shape itself
• 808 - ft_transform_geometry does not apply the transformation to an anatomical MRI
• 811 - implement spm2ft converter function
• 812 - ft_defaults sometimes takes very long to execute
• 815 - svg figures on distributed computing tutorial don't show correctly
• 816 - improve the tweets of the svn changes
• 819 - ft_getopt.mexw64 depends on MSVC 2010 dll
• 821 - read_combined_ds (fileio/private) calls read_data, rather than ft_read_data
• 822 - ft_connectivityanalysis seems to fail on powandcsd in input (ft_selectdata issue, I suspect upon averaging/channel subselection)
• 823 - ft_connectivityanalysis / ft_freqdescriptives don't seem to do jackknife anymore
• 824 - add 4D-gradiometer dataset to the test datasets
• 825 - mutexlock in combination with outputfile fails in ft_freqanalysis when ft_checkconfig is strictly removing unused cfg options
• 831 - deprecate cfg.xparam/yparam in plotting functions
• 832 - rename cfg.zparam in plotting functions into cfg.parameter
• 834 - ft_checkdata with cmbrepresentation fullfast should lose cumtapcnt and cumsumcnt
• 835 - coherence tutorial should use fourier in freqanalysis, rather than powandcsd
• 836 - ft_componentanalysis crashes with method='fastica' and MEG data in input
• 839 - documentation on manual artifact detection needs to be adjusted
• 840 - resample error
• 842 - bugfix for rejectvisual_summary
• 844 - if cfg.montage is specified in ft_preprocessing, it is only applied to the data
• 845 - ft_appenddata incorrectly initializes the output sampleinfo always to be empty
• 849 - convention of 'directionality' in spectral transfer function is swapped wrt the other connectivity metrics
• 850 - ft_checkdata gets confused with mtmconvol input and fourier
• 861 - ft_volumesegment with cfg.write = 'yes' writes the wrong transformation matrix to the files
• 867 - compiled ft_getopt fails on mentat 274
• 869 - compiled nanXXX fail when using a low matlab version
• 870 - fix text display bug in ft_multiplotER with multiple datasets
• 871 - add axes to summary plot in ft_multiplotTFR
• 882 - facilitate the editing and updating of SVG figures on the wiki
• 884 - ft_read_event adds the undefined and nonstandard urevent
• 885 - compiled ft_getopt fails when the input is a config object
• 897 - rename tests directory into "test"
• 903 - cfg.numcomponent fails most methods in ft_componentanalysis
• 904 - cfg.numcomponent fails for method=dss in ft_componentanalysis
• 906 - ft_senstype does not recognize the type of sensors for some of the data on /home/common
• 907 - test_ft_preprocessing fails to return identical results for .edf and .bdf
• 908 - /home/common/matlab/fieldtrip/data/test/raw/lfp/preproc_neuralynx does not exist
• 909 - test_ft_preprocessing fails on plexon data
• 910 - test_ft_preprocessing fails on 'tdt data
• 911 - add memtic/memtoc to all fieldtrip functions
• 912 - move clever handling of names of balancing structures to ft_apply_montage
• 913 - ft_connectivityanalysis gives inaccurate user feedback when doing npsf with cfg.channelcmbs
• 917 - inconsistent and missing versions for ft_getopt mex files
• 918 - compatibility issue with matlab2011a
• 921 - selecting freq parameter fails in ft_selectdata
• 924 - ft_denoise_synthetic does not have ft_checkconfig with trackconfig=on
• 925 - ft_freqcomparison documentation is not clear
• 926 - ft_xxxplot functions should be made more consistent with their return value
• 927 - ft_prepare_femmodel should be removed
• 928 - ft_spiketriggeredinterpolation assigns cfg.callinfo at the end, but the variables are not set at the beginning
• 929 - xxx2fieldtrip function user interface should be made more consistent
• 930 - test_ft_preprocessing fails for yokogawa160
• 931 - ft_appendfreq fails when the data does not exactly overlap
• 932 - ft_freqstatistics fails on old input data (again)
• 939 - determine the status of project http://fieldtrip.fcdonders.nl/development/halfspace
• 940 - confusing *intended* error appears in GdfWriter.h
• 943 - improve user-interface to ft_artifact_zvalue
• 944 - deprecate some old artifact functions
• 945 - non-parametric spectral factorization can be sped up substantially
• 946 - ft_appenddata reportedly fails to concatenate trialinfo and sampleinfo (even when that is possible)
• 947 - ft_neighbourselection help suggests you can use any cfg.layout
• 948 - test_ft_megplanar does not work
• 949 - ft_megplanar fails for method sourceproject
• 950 - ft_megrealign does not properly take balancing into account
• 952 - functions that return cfg should check on nargout
• 953 - the channel type and the physical units should be the output of ft_read_header
• 955 - move source code for vista mex files to fieldtrip/src
• 957 - ft_volumewrite should not be called in leadfield_fns
• 958 - what happens if simbio is not available or if the computer is a pc?
• 960 - rename statistics_montecarlo and such into ft_statistics_montecarlo
• 963 - neuromag data units should be reflected in the grad structure and ft_convert_units
• 965 - ft_hastoolbox is used for compat, but it does not detect compat correctly
• 966 - minor multiplotER bug with timing code
• 967 - move functionality of instantaneous causality and total interdependence into ft_connectivity_granger
• 969 - ft_volumerealign interactive gui doesn't show "R" & "L" indicators
• 975 - ft_freqanalysis should support variable number of tapers per trial for cfg.method='mtmfft'
• 976 - round-off issues lead to unexpected behavior of ft_specest_XXX
• 977 - make memreq and timreq required options in qsubcellfun
• 978 - display the job number in case an error is detected in the stderr log output
• 980 - ft_prepare_vol_sens loses vol.unit along the way
• 981 - ft_headmodelplot doesn't work with a multisphere volume conduction model in the input
• 982 - headsurface and head_surf seem to have largely overlapping functionality
• 989 - there seems to be a problem in selectdata in that the underlying dimlength does not recognize a .stat field.
• 993 - the different coordinate systems should be better documented in headcoordinates.m and the documentation to ft_volumerealign should be improved
• 1000 - create doodle for social event
• 1004 - XXX2grad functions should convert to new sensor representation directly
• 1009 - ft_plot_topo fails on line 196
• 1012 - random seeding is incorrect when using the local scheduler in qsubfeval, rand returns the same number
• 1013 - hassampleinfo fails on a timelocked structure with trials
• 1014 - appendtimelock fails if the input contains avg and trial
• 1015 - ft_rejectvisual zvalue button seems not to display a z-value
• 1016 - ft_read_mri fails to return a correct volume structure when not using spm for reading analyze files
• 1019 - implement ft_movieplotTFR
• 1021 - sort out all the appenddata/time/freq/source and ft_selectdata bugs
• 1022 - test_bug228 need to be finalized or deleted
• 1023 - rename headmodel_strip into headmodel_slab
• 1024 - the documented defaults in the ft_specest functions are inconsistent with the implemented defaults
• 1028 - ft_compute_leadfield should use warning_once
• 1029 - fix inconsistent naming of forward solutions
• 1030 - fixsens should not be made conditional on the sens definition
• 1031 - qsubcellfun uniformoutput=1 does not work
• 1033 - implement a consistent way to return help (or an error)
• 1035 - ft_multiplotER fails because the automatic layout is not correct
• 1038 - the reading functions can support tgz and zip datasets, unzip on the fly
• 1039 - re-rename ft_rejectconfound to ft_regresscounfound
• 1044 - MNE does not work smoothly in the context of singletrial/rawtrial
• 1050 - fixsens should be replaced by ft_datatype_sens
• 1055 - ensure that ft_neighbourplot internally uses the new-style elec/grad and not the old one
• 1056 - move ft_spike* functions to fieldtrip/contrib/spike
• 1057 - ft_freqanalysis_mvar is not documented itself, nor listed in ft_freqanalysis
• 1062 - ft_chantype does not recognize neuromag 306 system
• 1063 - ft_connectivityanalysis does not remove the autocombinations properly anymore when computing bivariate granger
• 1074 - for discussion in the FT meeting
• 1076 - resolve the indx input argument that is used in ft_topoplotTFR
• 1077 - implement a general documentation structure for guidelines
• 1078 - all functions that use cfg.elec, cfg.elecfile or get it out out of the data should be consistent
• 1079 - the cfg parsing of ft_multiplotTFR fails
• 1080 - fixneighbours should be solved only once - in ft_checkconfig
• 1083 - remove nested functions and use normal functions instead
• 1084 - I came accross ft_freqanalysis_tfr in the fieldtrip main folder...
• 1086 - time-frequency tutorial on the wiki is empty
• 1087 - replace simplefft in databrowser by a call to a browsefun
• 1091 - the alldist variable in ft_prepare_neighbours/compneighbstructfromtri seems to be unused
• 1096 - the documentation in ft_singleplotTFR for the directionality option should be revised
• 1097 - discuss the remove flag in ft_redefinetrial, possibly reimplement
• 1098 - the ft_qualitycheck reference documentation needs to be improved
• 1100 - the varargin and varargout of ft_denoise_pca should be properly documented
• 1101 - for discussion in the FT meeting
• 1102 - clarify output structure of ft_connectivityanalysis
• 1105 - add ft_preamble and ft_postamble to ft_neighbourplot
• 1106 - add ft_preamble and ft_postamble to ft_conjunctionanalysis
• 1111 - ft_freqgrandaverage doesn't output a dimord
• 1113 - remove all old Log messages by the SVN Id
• 1115 - ft_headmodel_concentricspheres fails
• 1116 - ft_prepare_headmodel incorrect handling of defaults
• 1118 - reading ctf data from a dataset where all meg channels are disabled fails with the routines in external/ctf
• 1120 - resolve inconsistency in reading balancing coefficients
• 1121 - ft_prepare_headmodel singleshell method does not work
• 1122 - to discuss: would it make sense to provide a set of template 3D grids in the fieldtrip release?
• 1126 - change handling of the mixing and unmixing matrix in ft_componentanalysis
• 1138 - qsubxxx reference documentation on wiki is empty
• 1139 - Library not loaded: /usr/local/lib/libgfortran.2.dylib
• 1140 - update ft_connectivityanalysis
• 1143 - begsample and endsample not processed for gdf in ft_read_event
• 1144 - undefined function ft_spikestation_sub_channelcombination
• 1147 - some surface functions need to be merged
• 1148 - meshes need to conform to a standardized matlab structure
• 1149 - clarify the options that specify what to plot
• 1150 - sourcestatistics fails to organise the input data in pos*rpt matrix
• 1152 - ft_databrowser fails to zoom out more than 10 seconds in CTF MEG data
• 1153 - cfg is lost from the output structure after calling ft_redefinetrial
• 1171 - Update documentation of mexfiles, and check for corresponding .m scripts (autocompilation, error msg and help).
• 1178 - ft_channelcombination fails with 3rd input argument
• 1179 - ft_rejectvisual crashes when ft_checkconfig is set to pedantic and preproc options are specified as fields of cfg
• 1186 - Extend the plotting tutorial with the connectivity plotting functions
• 1188 - add checkdata for spike functions
• 1189 - add testing functions for all spike functions
• 1190 - add ft_datatype_spikeraw
• 1191 - allow users to disable mem and time usage messages.
• 1192 - ft_spikeanalysis should be removed
• 1193 - update ft_spiketriggeredspectrum_tfr and add new ppc functionality
• 1195 - integrate fieldtrip spike toolbox with mclust
• 1196 - conversion between spike and raw data representation should be done by ft_checkdata
• 1207 - dimensionality of spike.waveform is not consistent across read out functions
• 1208 - functions for real-time interface with mysql database are missing
• 1211 - ft_chantype should be made faster
• 1218 - one of the figures (possibly more) in the layout tutorial is outdated
• 1219 - the test data on /home/common/ for neuromag306 (raw) contains mostly 0's
• 1220 - the preprocessed test data for neuromag122 still contains 306 channel data
• 1221 - ft_prepare_atlas has an inconsistent input
• 1223 - the scaling of the three orthoplots in ft_sourceplot is inconsistent
• 1225 - "could be Yokogawa system" warning triggered repeatedly
• 1227 - implement gifti-format and nifti-format for ft_sourcewrite
• 1228 - improve the fsample computation
• 1230 - suggestion for enhancement of ft_rejectvisual
• 1231 - what's the intended output of ft_getopt({'rpt' []}, 'rpt', 'all')?
• 1233 - typo in read_eeglabdata?
• 1241 - the svg figures on getting started with yokogawa crash the browser
• 1242 - databrowser time axis is incorrect for timelock input data
• 1247 - beamformer_sam lacks '%lambda' functionality
• 1249 - inconsistent grad-structure in output after ft_componentanalysis and ft_rejectcomponent
• 1250 - ft_preamble_distribute fails with varargin and varargout and with empty inputs
• 1251 - reference documentation for ft_movieplotTFR is missing
• 1252 - index of cfg options needs to be cleaned up
• 1255 - stacking in qsubcellfun does not work together with compilation
• 1261 - ft_plot_topo3d does not document its optional arguments
• 1262 - Problem reading fcdc_buffer_offline filetypes (version 20111231)
• 1268 - statfun_indepsamplesZcoh needs cfg.label or cfg.pos in input, but they are not used
• 1271 - is the /home/common/matlab/fieldtrip_private symlink still needed?
• 1275 - ft_networkanalysis misses a lot of the documentation
• 1276 - makeselection subfunction in ft_selectdata_new should support vectorial seldim
• 1277 - prewhitening functionality in ft_sourceanalysis misses low-level function
• 1282 - alleged bug in ft_topoplotCC
• 1293 - number of output arguments requested by user should overrule nargout
• 1295 - ensure consistent handling of the handedness of the volumetric data with respect to the real-world coordinate system
• 1299 - gtec_mat support disappeared from ft_read_header in svn merged branch
• 1302 - extend the regression testing framework with old versions
• 1307 - producing a layout from a bti248 grad structure results in a faulty layout
• 1311 - copy the improved 16/32 bit Neuroscan CNT detection from EEGLAB
• 1312 - ft_datatype_sens is sometimes used where sens can be empty
• 1313 - chantype/chanunit -> should we consider to represent them at the level of the grad, rather than in the header?
• 1314 - consider incorporating MNI source grids into ft_prepare_sourcemodel
• 1316 - use spm_bwlabel also for 2D data
• 1317 - implement forward solution based on leadfield interpolation
• 1318 - improve the filter padding options for the ft_preproc filter functions
• 1319 - implement an engine-based distributed computing toolbox
• 1320 - make test scripts for the pieces of code where spm8 calls ft functions
• 1321 - projectmom in ft_sourcedescriptives suboptimal for time domain methods?
• 1322 - clean up old test scripts from realtime/biosemi implementation
• 1324 - read_trigger and read_ctf_trigger produce different output
• 1328 - add support for SLURM backend
• 1337 - typo bug and wrong path
• 1341 - trialfun_general an be made more robust
• 1342 - ft_denoise_pca bug?
• 1348 - ft_read_header error while reading .cnt file in version 20120222
• 1354 - uint64 object is not needed any more on matlab 2011b
• 1356 - check whether the Neuromag Triux MEG system is fully supported
• 1359 - detecting the wrong acquisition rate
• 1364 - rda2ft converts a 'S 1' simulus into an int32 -1 value
• 1366 - add a small version of biosig file reading functions to fieldtrip/external
• 1367 - slow speed of niftii file creation using sourceinterpolate.m for 4D datasets
• 1368 - leadfield normalization fails for openmeeg forward solution
• 1377 - implement support for reading NetMEG data
• 1382 - saving buffer (recording app in realtime/utilities/playback) not saving all data
• 1384 - mex files for windows 32 should be compiled according to the guidelines
• 1385 - mex files for windows 64 should be compiled according to the guidelines
• 1386 - ft_prepare_headmodel should call ft_hastoolbox when cfg.smooth = 'yes'
• 1388 - ftp-server fieldtrips don't seem to be updated
• 1390 - data has variable trial lengths, you specified not to accept that
• 1391 - preproc converts time axis to fsample and offset and then recreates the time axis
• 1404 - implement support for the neurosim spikes and signals file format
• 1408 - make the demeaning of data prior to filtering consistent
• 1409 - ft_selectdata_new removes dimord field
• 1414 - fix the test scripts
• 1415 - fix the following the test-functions
• 1416 - unexpected behavior of ft_setopt
• 1422 - ft_sourceinterpolate returns the incorrect inside field when interpolating from 2D to 3D
• 1423 - ft_sourcestatistics does not support latency and foilim selection (in old implementation)
• 1425 - coherence calculation with rpttap dimension size 1
• 1426 - the openmeeg volume conduction model fails in some test scripts
• 1427 - allow egi_mff to be read when one of the files in the directory/package is given as filename
• 1428 - implement blocking in ft_read_data
• 1438 - reading 4D data fails for empty room data
• 1441 - openmeeg test scripts are not executed
• 1447 - implement highlighting in ERP figures (multi and singleplot) with the potential difference
• 1450 - subfields in ft_default are not added to input cfg by ft_checkconfig
• 1454 - the info on MEG dataformats should be moved on the wiki
• 1459 - ft_multiplotTFR needs some fixes
• 1462 - speed up ft_prepare_neighbours
• 1470 - ft_megplanar outputs NaNs when using input data containing backprojected components.
• 1474 - rejectvisual summary fails on single-channel data
• 1480 - struct() crashes on config-object when this object contains a struct array with one of the fields being itself a struct
• 1486 - improve artifact detection and rejection for unstable acquisition systems
• 1487 - the email lists have changed from @donders to @science
• 1489 - implement support for neurorighter data format
• 1493 - function names are conflicting with other toolboxes
• 1494 - update yokogawa to the latest version 1.04.01 of 01-Nov-2011
• 1495 - ft_appendtimelock along channel dimension
• 1496 - fixsampleinfo bug with timelock data without trials
• 1497 - provide more pointers to good reference literature
• 1499 - ft_singleplotER does not plot statistical error
• 1500 - find a date for a day out with the fieldtrip team
• 1501 - ft_spiketriggeredspectrum
• 1502 - forbid fields in cfg that are not used
• 1503 - apply phase rotation for multitaper in ft_spike spiketriggeredspectrum
• 1505 - delete the fieldtrip/multivariate directory
• 1506 - test bug to check that the fieldtrip-bus list still works
• 1507 - ft_dipolefitting crashes due to dependence on Fixed-Point Toolbox
• 1510 - BEM meshes seem to be intersecting in MEG forward model with openmeeg
• 1514 - ft_spike_select should be merged with ft_selectdata
• 1515 - databrowser with viewmode=vertical should get better vertical ticks
• 1516 - update the source localization figures in the CMC tutorial
• 1517 - dipole fitting dependent on optimization_toolbox
• 1521 - eps version of the logo is missing
• 1527 - ft_sourceplot fails on a source structure with a single frequency
• 1528 - implement test script based on the various EEG data that is available
• 1529 - unexpected behavior of ft_plot_ortho
• 1530 - ft_sourceplot fails on parameterselection
• 1533 - nrpt size does not match varout size in ft_connectivityanalysis after keepchn selection
• 1534 - spass2fieldtrip sample rate hard coded
• 1536 - ft_getopt fails on windows 64 bit
• 1538 - the comments in the matlab code in the eventrelatedaveraging tutorial have the conditions mixed up
• 1539 - provide a link to the trialfun on the ftp server
• 1540 - ReadHeader has to be moved from fieldtrip/private to fileio/private
• 1542 - ft_spike_is is using checkopt with ascendingdoublebivector
• 1547 - rename cfg.vol into cfg.headmodel and cfg.grid into cfg.sourcemodel
• 1548 - spike_crossx mex file
• 1550 - ft_spike_maketrials cfg.trl
• 1551 - 'spline' method fails in ft_channelrepair
• 1552 - implement ft_math_xxx functions
• 1553 - add the dcc customized acticap64 and acticap32 layouts
• 1556 - bug in paired ANOVA
• 1557 - add trentool to fieldtrip/contrib
• 1561 - bandpass filter seems to be direction sensitive
• 1565 - re-implement the analysisprotocol function to allow exporting the pipeline/workflow to file
• 1567 - improve the detection of BrainVision *.dat files
• 1568 - EGI layout fails for ft_databrowser with components
• 1579 - CalcMD5 mex file is missing for most platforms
• 1582 - The biosemi acqisition does compile not on OSX when targeting 64-bit.
• 1583 - ft_prepare_sourcemodel should use ft_fetch_sens and ft_fetch_vol
• 1584 - singleshell nolte options should be specified in the vol structure, not in a cfg field
• 1585 - cell cfg.statistic field with multiple strings crashes ft_freqstatistics
• 1586 - tex formatting fails in ft_analysisprotocol
• 1587 - ensure consistent handling of skin/skull/brain/source surfaces in vol
• 1590 - simbio fem modeling should be documented
• 1592 - allow for a dimord that is different from the standard ones
• 1593 - number of channels can be mismatched with neighbours in ft_statistics_montecarlo with clusters
• 1594 - consider whether spm_bwlabel should also be in default fieldtrip
• 1595 - symbolic link in tobi messes up svn on windows disk
• 1602 - ft_selectdata_new has a few simple bugs that crash on freq data
• 1603 - copy the demo_buffer application to utilities/buffer
• 1604 - pthreads dlls should only be in external, not in buffer
• 1605 - fieldtrip/realtime/src/acquisition/brainamp directory is empty
• 1606 - ft_plot_slice fails for orientation different than z-direction
• 1619 - ft_prepare_sourcemodel crash
• 1636 - ft_select_range uses data limits instead of figure axis limits for horizontal selection
• 1644 - optional display of dewar/sensors in combination with realtime MEG headlocalizer
• 1645 - implement http download of code and data as alternative to ftp
• 1647 - random number initialization will (again) change after matlab2012a
• 1648 - qsubcellfun fails on matlab version 7.8 (2009a)
• 1649 - cfg option Ftest starts with an upper-case character, should be lower-case
• 1650 - similar cfg options should have similar reference documentation
• 1653 - Artinis is missing on the bci implementation page
• 1654 - ft_read_headshape should have better reference documentation
• 1656 - input variable name should be consistent with the data type
• 1657 - bug in memorizing the birthday of one of the most valued core members
• 1658 - ft_sourcedescriptives should have the option cfg.trials
• 1659 - add figures from documentation to faq on head coordinates
• 1662 - implement support for the scirun data format and use it as FEM testcase
• 1665 - align_ctf2spm.m fails on regular donders MRI data
• 1666 - convert the example scripts into test scripts
• 1667 - improve the caching implementation in ft_read_data
• 1671 - move the dics appendix in the coherence tutorial to a separate page
• 1672 - test_headmodel_infinite fails
• 1673 - test_ft_plot_slice fails
• 1674 - test_ft_plot_vector fails
• 1684 - rename subj2.zip on the ftp server and documentation
• 1685 - 'sampleinfo' non-existent error when selecting a time window with ft_selectdata
• 1686 - improve debugging of end-users problems using logging options
• 1688 - there is a file called "testname" in the ftp zip file release
• 1690 - peer-to-peer should not be mentioned in the reference documentation
• 1700 - update the readers in the external/besa directory
• 1702 - ft_filetype has difficulties automatically detecting 4d-files
• 1703 - add elan2fieldtrip and fieldtrip2elan to exchange data back and forth
• 1706 - implement ft_preproc_smooth
• 1709 - ft_prepare_headmodel (singleshell) can be made more robust
• 1717 - Update fieldtrip-bugs
• 1725 - replace ft_prepare_atlas by ft_read_atlas
• 1726 - ctf realtime buffer acq2ftx naming inconsistencies
• 1730 - consider making a function private to the preproc module that implements various ways of padding
• 1731 - implement tighter provenance using md5 hashes on input and output
• 1732 - fprintf to stderr is caught as error by qsubcellfun
• 1736 - implement a function in fieldtrip/private as replacement for imfill holes
• 1738 - make the binary masks in ft_volumesegment consistent
• 1742 - problem with number of qsubcellfun output argument
• 1747 - the reading functions can support URL syntax, download on the fly
• 1750 - use consistent option names for segmentationstyle, inside and cmbrepresentation
• 1752 - implement a circular layout for ft_prepare_layout
• 1753 - allow multiple nested memtic/memtoc calls
• 1754 - new compiled nanXXX functions don't work
• 1755 - ft_datatype_segmentation uses determine_segmentationstyle
• 1760 - the horizontal axis in ft_multiplotER is at a weird location
• 1762 - config object fails on struct-array
• 1765 - standard_grid3d10mm does not fit well after non-linear warp
• 1766 - check the test_headmodel_xxx scripts
• 1770 - improve the neuralynx NRD implementation
• 1773 - ft_read_header should be made faster
• 1775 - implement ft_sourceparcellate function
• 1785 - implement support in ft_read_sens for the waveguard electrode file format
• 1787 - WAIT_DAT on events depends on incoming data
• 1790 - ft_version() returns FT_ROOT/utilities in ftpath
• 1791 - implement a function for TMS artifact removal
• 1793 - the ERF cluster stats tutorial is incorrect w.r.t. dealing with individual trials
• 1801 - consider using sens.type for grad and elec
• 1803 - there is a wiki page with "known problems" that predates bugzilla
• 1806 - grad.type has to be updated following ft_megplanar
• 1807 - bti248 gradiometer system is not explicitly defined
• 1813 - ft_fetch_header: requires grad field in header
• 1814 - ft_spike_waveform: typo in config option
• 1815 - ft_prepare_mesh should make hexahedral mesh
• 1816 - extend ft_volumesegment with FSL BET and FAST
• 1817 - ft_prepare_sourcemodel should deal with input/output for simbio headmodel
• 1818 - ft_read_headshape has to be made consistent with new segmentation/parcellation
• 1819 - ft_read_headshape should return the label for tetgen files
• 1820 - ft_headmodel_simbio needs to be updated
• 1821 - test_headmodel_simbio needs to be updated
• 1822 - the EEG heademodel tutorial needs to be extended with simbio FEM
• 1823 - make a MNI template brain available using SIMBIO FEM
• 1824 - update the external_simbio group on SVN
• 1826 - make a version of ft_volumerealign that can align T1, T2, PD, CT, DTi and such to each other
• 1828 - ft_convert_coordsys fails with particular input MRI dimensionality
• 1830 - merge the functionality of ft_sensorrealign, ft_electroderealign and ft_interactiverealign in one or two functions
• 1831 - consider adding a vectorized version for ptriproj
• 1833 - update ft_plot_mesh for hexahedra and tetrahedra
• 1834 - Impossibility to use ft_volumewrite using the data and code from the tutorial
• 1835 - external/dss includes a lot of files that are not needed
• 1836 - ft_write_headshape has to be extended to allow the export of FEM meshes
• 1837 - clean up the external/simbio directory
• 1840 - ft_read_headshape has to be extended to allow the import of FEM meshes
• 1848 - fix some small topics that have been requested for spm12
• 1851 - create test script for dataunits in ft_read_header and data
• 1852 - create test script for dataunits in ft_prepare_vol_sens
• 1854 - spm fieldtrip integration fails
• 1855 - enfore equality between number of channels and size(tra,1) in sensor array
• 1856 - make sure that elec/grad channel units and that hdr.unit are specified for MEG systems, biosemi, brainvision and egi
• 1863 - the svn test directory is filling up with mat files
• 1866 - add icasso-toolbox to fieldtrip/external
• 1871 - plotting fails for single precision data
• 1872 - add Jim to the developers list
• 1873 - ft_connectivity_dtf does not have any reference documentation
• 1874 - ft_componentclassification does not make correct use of the preamble and postamble
• 1875 - there are functions that use the ~ output argument, which is incompatible with older MATLAB versions
• 1876 - implement support for the PALS B12 atlas in ft_read_atlas
• 1878 - ft_artifact_clip returns a different number of artifacts
• 1883 - the field cfg.debug is not allowed in spike functions
• 1887 - extend ft_connectivityanalysis with measures for time-domain and component data
• 1888 - deployed fieldtrip crashes
• 1890 - ft_channelrepair does not seem to handle the new sens fields well
• 1891 - it would be nice if qsubcellfun could evaluate private private functions
• 1892 - configuration tracking and callinfo tracking collide
• 1897 - make a requirements item under the download main menu item
• 1898 - qsubfeval fails if there are spaces in the name of the present working directory or path
• 1900 - ft_freqstatistics crashes on maci64, due to mex?
• 1901 - changes in units seems to affect SPM
• 1902 - ft_prepare_sourcemodel should use consistent unit handling
• 1908 - ensure consistent units for the headmodel functions
• 1913 - recompile the ANT libeep mex files on all platforms
• 1914 - implement support for the babySQUID MEG system in Boston
• 1916 - scalingfactor needs to be made faster
• 1917 - provenance with md5sum fails for very large input variables
• 1918 - clarify how data transformations are affecting the sens structure
• 1919 - merge planarchannelset with ft_senslabel
• 1920 - restore the complete svn revision history on the server
• 1922 - extend and test functionality of ft_timelockgrandaverage
• 1923 - implement a eventgui or event2ft interface
• 1924 - implement the deymed EEG file format
• 1928 - the realtime compile script and Makefiles write to the wrong location
• 1934 - merge patch from googlecode for surface_intersection in branch
• 1937 - implement job dependencies in qsubfeval
• 1938 - some small improvements to ft_analysispipeline
• 1944 - svn server started sending emails with "Subject: Output from your job 32 "
• 1945 - create function that allows for manual editing of boolean volumes...
• 1950 - trackconfig gets confused with other cfg
• 1951 - some of the test scripts started failing during the bug binge
• 1953 - Clarify the correctm naming for holm, holms, fdr
• 1955 - implement native support for the NIRS machine at the DCC
• 1957 - implement fieldtrip menu option in figures and analysis pipeline
• 1961 - make an implementation of the buffer client for the arduino
• 1970 - inconsistent byte swapping in float32 for communication between Intel and Arduino (endianness)
• 1977 - unexpected interaction between masking and the handling of nan values
• 1981 - consider implementing a cheby2 filter in ft_preproc_xxxfilter
• 1986 - wrong channel alignment by ft_combineplanar and ft_xxxgrandaverage when interpolated channels are present
• 1989 - find external functions that were downloaded from elsewhere and place them in external/misc
• 1990 - something is broken with regards to grad.balance
• 1998 - neuralynx CSC problem due to gaps in the acquisition
• 1999 - merge svn testing and benchmark directory with fieldtrip/test
• 2004 - ft_connectivityanalysis: improve support for source level frequency domain data
• 2005 - ft_sourceanalysis: improve data handling
• 2006 - ft_prepare_sourcemodel: consider support for atlas-based parcellation
• 2008 - ft_spiketriggeredspectrum_fft should work with spike input
• 2009 - pinvNx2 function is missing, lmoutrn and lmoutr confusion
• 2013 - review the list of mex files for all platforms
• 2023 - .nex files not correctly read out
• 2028 - ft_channelselection needs to be reconsidered
• 2031 - fieldtrip menu item is added multiple times
• 2032 - ft_sourceplot: build in check for matching coordsys when using method = 'surface'
• 2033 - implement replacement for signal processing toolbox
• 2035 - reading of events from NEX gives error if file contains no events
• 2036 - small bug fixes in exporting fiff: fileparts returns dot and dataout does not exist (#1)
• 2040 - nansum fallback behaves incompatible with the nansum mex file
• 2044 - eventtype can contain empty characters that should be removed
• 2045 - spiketriggeredspectrum increases the number of spikes
• 2046 - ft_read_spike on nex file results in spaces in event.type
• 2053 - implement roi selection in ft_selectdata
• 2054 - use rollback_provenance consistently when calling a high-level FT function from another
• 2055 - extra fileformat option is missing in documentation of ft_read_mri
• 2057 - support non-bash shell in qsub
• 2060 - cannot read neuralynx events.nev in the absence of LFP channels
• 2062 - resolve some of the recent regression problems
• 2063 - Problem with freqcomparison reported on email list
• 2083 - ft_prepare_atlas: deprecate this function
• 2084 - ft_sourceanalysis should give warning if crsspctrm is missing
• 2085 - ft_senstype needs to be made faster
• 2091 - simbio seems to be missing for windows
• 2095 - make fieldtrip robust to matlab 2013a changes
• 2096 - implement cifti import/export function
• 2098 - write FAQ on dmlt mex file problems
• 2100 - ctf mri version 4.1 is not supported
• 2104 - Unable to use ft_redefinetrial (fieldtrip-20130301) on MEG data preprocessed with older version
• 2114 - make coordsys and coordinates consistent
• 2121 - why are events stored in data.cfg.previous.previous etc?
• 2123 - ft_checkdata and others: there are some conflicted files on /home/common/fieldtrip
• 2131 - enginepool fails to start
• 2133 - egi_mff_v2 reading causes global variables to be deleted
• 2146 - ica cleanup problems with numcomponent < numchannel
• 2149 - remove the old SAM results from SubjectXX.zip
• 2150 - buffer recording hangs when writing with mobita
• 2162 - avoid eval and feval in main fieldtrip functions
• 2163 - bug in read_neuralynx_nse function dur to variable record size
• 2164 - The ft_artifact_zvalue function
• 2170 - ft_read_event changed for neuromag
• 2175 - resolve concatenation warning in flattopwin
• 2176 - support real time fMRI for VB17 on Skyra
• 2177 - stylesheet needs some improvements for courier font
• 2179 - ft_singleplotER: call to ft_checkconfig(...,'createsubcfg','preproc') causes crash
• 2195 - ft_lateralizedpotential.m strmatch
• 2199 - remove cfg.transform from ft_sourcedescriptives
• 2200 - explain on page 1 how to get support
• 2202 - ft_hastoolbox: crash when doing ft_hastoolbox('SPM8UP', 1) ...
• 2205 - consistent documentation/implementation in ft_dipolefitting
• 2206 - implement bootstrap method for statistics
• 2207 - some files have the "subversion does not use Log" comments in them
• 2208 - implement drop-in replacement function for finv
• 2209 - MATLAB documentation states strmatch is not recommended, use STRNCMP instead
• 2213 - svnsync to sourceforge fails
• 2214 - link github and svn, i.e. have them synchronize automatically
• 2215 - do not store test data in the svn/git repository
• 2223 - update the dokuwiki CMS on the fieldtrip website
• 2224 - cfg.previous fails for ft_selectdata
• 2225 - speed up warning_once
• 2227 - extend ft_redefinetrial with interpolation of missing data, i.e. where the TMS pulse used to be
• 2228 - be consistent with opening new figure windows
• 2230 - ft_connectivity_granger/csd2transfer: redesign handling of blockwise and blockwise/conditional
• 2231 - old md4 approach for reading 4D data fails
• 2232 - external/gifti.m: cannot handle the label table from caret label files
• 2233 - ft_rejectartifact: fails to execute artifact_xxx since the compat directory has been reorganized
• 2237 - rollback_provenance: fails when data structure lacks a cfg-field that is a structure
• 2240 - record the MEG toolkit on video
• 2241 - make a youtube video with the electrophysiology and instrumentation background
• 2242 - make a youtube video that explains the frequency resolution FAQ
• 2243 - make a youtube video introducing the fieldtrip toolbox
• 2244 - make a youtube video explaining the various types of padding
• 2245 - make a youtube video addressing the FAQ on 50Hz line noise
• 2246 - make a welcome video for our youtube channel
• 2251 - fix the mailman-to-rss conversion on the wiki
• 2252 - documentation for wavelet needs some clarification
• 2253 - properly merge the connectivity and connectivityextended tutorials
• 2274 - ft_read_event for neuralynx Events.nev file
• 2283 - ft_connectivityplot needs a legend in case of multiple inputs
• 2284 - ft_multiplotTFR: working with connectivity data and cfg.refchannel='gui' crashes
• 2285 - ft_appendfreq: no support for frequency structures with labelcmb
• 2286 - implement a working version of eloreta
• 2287 - implement tfce
• 2288 - collect video material from hamburg2013 workshop
• 2292 - replace all occurrences of dhk with tri
• 2293 - correct the computation of ppc1 and ppc2
• 2296 - ft_databrowser Component View: Component Number Missing
• 2300 - make side-by-side documentation comparing FT to BrainStorm
• 2301 - documentation and code are inconsistent in powcorr_ortho implementation
• 2302 - add a proper walltime and mem estimate to the execution of the test scripts
• 2303 - reading generic EEG files fails due to error message from ft_senslabel
• 2306 - get Haiteng started as developer
• 2310 - allow more anonymous pipeline execution by not storing the time and date
• 2321 - mtmwelch - no longer a supported method
• 2322 - the icp function is not compatible with its use in ft_volumerealign
• 2335 - ft_databrowser doesn't handle queued key presses properly
• 2336 - read the individual FE mesh and the individual leadfields from BESA
• 2339 - consider getting involved in neuralensemble.org
• 2340 - merge sourceanalysisDICS with test_ft_sourceanalysis
• 2341 - recompile the buffer mex file for neuromag_fif support
• 2345 - allow trigger values to be represented either as individual bits or as words
• 2346 - make diagnostic function for source-model/volume-model intersections
• 2349 - ft_compute_leadfeld should allow for Nx3 dipole positions for interpolated leadfield model
• 2350 - ensure that geometrical units are dealt with consistently for all headmodels
• 2351 - document the print/warning/error usage in the code guidelines
• 2353 - rename scalingfactor into ft_scalingfactor and move from private to utilities
• 2355 - get rid of the cfg.sourceunits option
• 2356 - get rid of the cfg.units option
• 2357 - split ft_convert_units in a determine and convert function
• 2358 - ft_prepare_sourcemodel has a non-standard way of dealing with the input arguments
• 2359 - ft_prepare_sourcemodel should be extended with cortical sheet manipulation options, like spherify
• 2360 - allow ft_statistics_stats to output t-values for all cases when t-test is used
• 2369 - the solid_angle mex file crashes with single-precision input data
• 2370 - implement support for reading 3D facial scans in ply format
• 2371 - test_bug70 fails sporadically
• 2372 - ft_timelockstatistics crashes on data with keeptrials='yes' and cfg.parameter='avg'
• 2380 - openmeeg leadfield has incorrect units
• 2383 - provenance of the mesh is not passed correctly into volume conductor
• 2386 - plot electrodes as disks in ft_plot_sens
• 2390 - implement support for the XDF data format
• 2396 - merge ft_import_surf into ft_read_headshape
• 2397 - merge ft_iso2surf into ft_prepare_mesh
• 2398 - merge the functionality of ft_leadfield_openmeeg into the regular fieldtrip functions
• 2401 - create test script for CTF *hdm file
• 2405 - channelconnectivity fails on test_bug2404
• 2406 - ft_channelrepair should have method=average
• 2408 - ft_datatype_volume does not specify unit as an optional or required field
• 2411 - implement matching pursuit decomposition
• 2412 - ft_om_compute_lead function is called but not present in openmeeg
• 2413 - improve support for eye tracker data
• 2416 - ft_apply_montage deals with chantype twice
• 2418 - ft_senstype does not return neuromag306alt
• 2419 - non-existent field 'use_tri_area'.
• 2420 - beamformer tutorial test scripts need excessive resources on torque
• 2421 - allow specification of units in ft_dipolesimulation
• 2422 - pos2dim3d needs the statistics toolbox for a simple zscore
• 2423 - Bug Johanna with a bug
• 2430 - add support for LSF backend
• 2435 - error: different sampling rates in continuous data not supported
• 2438 - improve ft_plot_sens for plotting electrodes
• 2441 - anatomy/template: low res and hi res MRIs are stored with left vs right-handed axes system
• 2442 - ft_determine_coordsys is inconsistent with coordsys='unknown'
• 2443 - ft_multiplotER wants to have cfg.refchannel in powandcsd data, although I want to plot powspctrm
• 2445 - external/stats mex files are missing for 32 bit linux
• 2448 - ft_preproc_highpassfilter/lowpassfilter: Default filter order for 'but' filters
• 2450 - ft_rejectvisual fails on data that is all-zero
• 2460 - ft_datatype error with two (logical) mask fields
• 2465 - document how fieldtrip can help implementing Sandve et al. 2013
• 2466 - MOEGI - mother of all EGI MFF bugs
• 2467 - make test script for TactileStimulusDipolefit
• 2471 - ft_timelockgrandaverage does not handle differences in trial length under 'within'
• 2472 - void* does not work on VC2010
• 2475 - collect video material from Gottingen workshop
• 2476 - fr_freqanalysis_mvar gets confused with the loadvar due to it being wrapped in ft_freqanalysis
• 2482 - support segmented brainvision data with its own trialfun
• 2484 - implement ft_deidentifydata function for anonimization purposes of fieldtrip data structures
• 2486 - provide transition for users from egi_mff version 2 to version 3 file format
• 2487 - revise documentation with respect to dependency on mathworks toolboxes
• 2494 - Errors importing Yokogawa data with fieldtrip-20140303 version
• 2496 - change order of isolines and surface plotting in ft_plot_topo
• 2497 - implement test scripts for fieldtrip/external/stats and fieldtrip/external/signal drop-in replacement functions
• 2498 - recompile mex files on win32
• 2502 - ft_freqstatistics requires XXXparameter ormat for parameter names, which is not clear from the documentation
• 2505 - remove symbolic links from svn repository
• 2508 - make it optional whether dimensions are kept after averaging with ft_selectdata
• 2509 - makeselection_cumtapcnt is causing problems in data without cumtapcnt
• 2512 - archive the fieldtrip lecture video of Irina in Moskow
• 2514 - implement kappa truncated-svd for beamformer covariance inverse
• 2515 - duplicate faq on realtime headlocalizer
• 2517 - merge ft_checkdata/fixsource with ft_datatype_source
• 2518 - ensure that component data can be used as input in sourceanalysis, dipolefitting and all other functions
• 2519 - isequalwithequalnans is not recommended, use isequaln instead
• 2520 - ft_checkdata fails on componentanalyzed timelock data
• 2521 - ft_volumerealign: restructure the headshape method
• 2526 - ft_prepare_sourcemodel and mri.coordsys
• 2533 - add cfg.plotselection to only plot those trials present in cfg.trials
• 2534 - add cfg.plotselection to only plot those trials present in cfg.trials
• 2535 - Error in ft_apply_montage: gradiometer info not correctly selected?
• 2536 - ensure correct double selections in ft_selectdata
• 2537 - update the matlab versions in qsubfeval
• 2538 - update all calls to ft_selectdata_old to use the common (newer) implementation
• 2542 - Fix regression errors due to ft_selectdata
• 2546 - ft_selectdata 'avgovertime' does not remove time from the resulting structures dimord
• 2556 - ft_sourceparcellate
• 2560 - ft_sourceplot: verify correctness of 'ortho' display
• 2561 - ft_selectdata and getdimord
• 2563 - ft_selectdata (new version) cannot avgoverfreq using alternative parameter names
• 2565 - record and collect all material for Nijmegen2014 MEG toolkit
• 2568 - ft_selectdata uses ~ in output variables
• 2569 - windaq data cannot be read on a matlab2013a machine
• 2576 - grid search results in "using gradiometers specified in the configuration" message even for EEG data
• 2577 - improve the svn log messages for autosync updates
• 2582 - improve support for ft_realtime_micromedproxy
• 2583 - sigma_t of Morlet wavelet incorrect in documentation
• 2584 - ft_selectdata: new version does not correctly select trials from a raw data structure
• 2590 - implement ft_removetemplateartifact function for Tom's TDCS artifacts
• 2595 - make regression test script for EEGLAB dipfit plugin
• 2597 - ft_selectdata alphabetizes labels, this leads to wrong leadfield order with ft_prepare_leadfield
• 2598 - Peermaster Mex issue
• 2602 - document how to deal with differences in mouse head size
• 2603 - make template layout for mouse EEG system
• 2604 - document coordinate system for mouse anatomical models
• 2612 - atlas_lookup fails for mouse data
• 2613 - ft_freqanalysis inconvenience with comp+raw
• 2616 - qsubget will fail if jobs are not in the queue history any more
• 2620 - ft_multiplotER ignores the cfg.showoutline option and always plots it
• 2624 - improve the TMS tutorial
• 2625 - ft_freqanalysis seems to ignore cfg.channel
• 2629 - ensure that all files have the correct line endings (dos/unix)
• 2633 - improve job status handling for qsubcellfun on SGE
• 2635 - update the mouse eeg documentation with the latest changes in the script
• 2636 - extend ft_electroderealign with automated electrode positioning for 40 electrode mouse grid
• 2638 - consider adding a microdonation service to the fieldtrip wiki
• 2640 - ft_plot_slice does not draw the intersection with a surface mesh correctly
• 2643 - ft_sourceinterpolate crashes (Undefined function or variable 'abort')
• 2646 - ft_freqanalysis now requires explicit channel input and does not default to 'all'
• 2649 - implement event writing for BrainVision eeg/vhrd/vmrk
• 2652 - ft_prepare_layout is not keeping provenance correctly
• 2653 - ft_preprocessing returns NaNs if bsfilter is combined with precision = 'single'
• 2654 - ft_sourceplot functional image scaling trouble
• 2655 - rollback_provenance interferes with configuration tracking
• 2657 - ft_topoplotTFR crashes due to undefined variable 'comp'
• 2659 - Failure of ft_timelockgrandaverage with keeptrials=1 timelock data
• 2669 - use of 'avg' field with ft_sourceinterpolate
• 2675 - document the Waxholm mouse brain coordinate system
• 2676 - export provenance (data.cfg.previous) to PROV format
• 2677 - consider DRMAA as generic backend for qsub
• 2680 - ft_timelockanalysis does not compute minperlength correctly
• 2683 - test tutorials for Birmingham workshop
• 2686 - make a tutorial using 4D/BTi data
• 2690 - read_sbin_header.m, unexpected bracket
• 2692 - collect video material from Birmingham workshop
• 2693 - update the wiki to the latest version
• 2695 - update documentation of ft_freqanalysis with method 'mtmconvol'
• 2696 - provide documentation on the applicability of ft_networkanalysis
• 2697 - make documentation and FAQ more consistent
• 2701 - get Jennifer started as developer
• 2704 - potato art expression missing
• 2705 - ft_rejectvisual does not keep channels with cfg.keepchannel='yes'
• 2706 - merge the crosshair plotting
• 2707 - implement ft_volumerealign based on fiducial clicking in 3D skin surface mesh
• 2708 - clarify contrastlim versus colorlim/clim in ft_sourceplot
• 2709 - config/subsref results in: Non-overloaded subscripting can produce only one result
• 2713 - ft_databrowser does not plot labels
• 2714 - ft_databrowser displays black screen under some conditions
• 2715 - ft_math: suggestions for improvement
• 2716 - flowcharts in natmeg preprocessing tutorial need updates
• 2717 - create a FAQ about cfg.lambda
• 2718 - ft_sourceplot refers to ft_prepare_atlas
• 2719 - cfg.trials=[]; in ft_selectdata results in cfg.trials = 'all';
• 2720 - tutorials should start with close all, clear all
• 2721 - mask is not handled correctly in ft_multiplotTFR
• 2722 - maskparameter is not passed along properly in ft_multiplotER
• 2724 - ft_multiplotXX printing in landscape mode should be option, not default
• 2727 - ft_clusterplot has regression error due to change in r9830
• 2729 - make kurtosis beamformer example script for epilepsy data
• 2730 - ft_sourceplot: on-the-fly surface interpolation works not as expected according to a user
• 2733 - add a drop-in replacement function for stats/zscore
• 2734 - initial CIFTI io tests fail
• 2735 - ft_write_cifti fails for dtseries if there is only a single time point
• 2738 - is it possible to switch off the autocorrect functionality while typing comments in bugzilla?
• 2739 - Data Alignment issue for ft_sourceplot (ortho mode)
• 2741 - fix cifti indexing issue with missing data on medial wall
• 2742 - prevent power from being removed as 'probabilistic' field
• 2746 - loadcnt sometimes behaves weird by trying to jump to a non-integer valued file pointer
• 2751 - remove spam from fieldtrip wiki
• 2752 - MATLAB2014b stuck ft_databrowser
• 2756 - ft_volumerealign crash when plotting (looks for fields not present in mri)
• 2761 - ft_connectivityanalysis method=corr has time in output
• 2762 - deprecate/revamp prepare_freq_matrices
• 2763 - no data and test script for MNE tutorial
• 2764 - use explicit reshape instead of squeeze
• 2765 - senstype gives inconsistent type for planar and planar_combined layouts
• 2767 - improve support for averaged neuroscan fif files
• 2769 - make ft_sourceplot and ft_sourceinterpolate behave consistently
• 2773 - fix EEG source modelling
• 2776 - ensure correct numbers of power spectral density as returned by ft_freqanalysis, considering the bandwidth
• 2777 - freq2timelock / timelock2freq
• 2778 - ft_regressconfound potentially copies unwanted fields over from input to output
• 2779 - ft_timelockanalysis should distinguish between trialdimord and avgdimord/vardimord
• 2780 - ft_regressconfound is not reliable in detecting confounds
• 2781 - document how to get started with ecog data
• 2786 - merge ft_freqgrandaverage with ft_timelockgrandaverage
• 2787 - implement compiled ft_standalone and allow it to be called from qsubcellfun
• 2789 - ft_checkdata fails in ft_sourceanalysis for TFR with nfreq=1 and ntime=2
• 2790 - ft_connectivityanalysis fails with cfg.trials
• 2791 - ft_checkdata/createdimord should be merged with getdimord
• 2792 - ft_volumerealign does not store provenance correctly
• 2793 - add mini version of spm12 to fieldtrip/external
• 2794 - implement support for the KRISSMEG data format
• 2795 - use new data handling for ft_timelockstatistics, ft_freqstatistics and ft_sourcestatistics
• 2796 - do not use source.avg.xxx in any FieldTrip function and use logical inside
• 2804 - ft_specest_wavelet: evaluate and incorporate Michael's suggested correction of wavelets
• 2805 - clean up documentation of MEG UK workshop
• 2808 - reading the last sample from a neuromag fif file returns 0
• 2810 - get Luca and Remco started as developers
• 2816 - getdimord -- getdimsiz infinite loop
• 2821 - fix the donders/fcdonders email addresses on the mailing list
• 2822 - implement frequency domain MNE
• 2823 - restructure the visualisation tutorial
• 2824 - implement Harmony: Source Reconstruction in the Anatomical Basis of Spherical Harmonics
• 2827 - ft_prepare_sourcemodel does not update 'inside' field with tight grid
• 2828 - improve support for running FieldTrip with GNU Octave
• 2831 - add description and summary to both ICA example scripts
• 2832 - cfg.debug=saveonerror fails after rollback_provenance
• 2835 - bug binge: diagnose and/or fix broken testscripts that were still working recently
• 2836 - allow objects to be saved in the input.mat file without warnings
• 2837 - extend and document electrocorticography (ecog) tools
• 2839 - allow spm12 as full alternative to spm8
• 2840 - diagnose and/or fix testscripts that fail to run properly
• 2856 - keyboard does not work using GUI from ft_artifact_zvalue
• 2857 - ft_artifact_zvalue interactive GUI fails in 2014b and keyboard buttons don't work
• 2863 - implement plan for server room migration
• 2866 - create a FAQ on the effect of variable trial numbers on statistical tests
• 2872 - implement support for Jinga-Hi JAGA16 system
• 2875 - ft_sourceanalysis with method 'dics' fails due to non existing field 'label'
• 2877 - implement an ft_deface function
• 2879 - ft_sourcestatistics: failure with multiple MNE source results
• 2885 - collect video material from 2015 Nijmegen MEG toolkit
• 2886 - ft_freqstatistics crashes for freq/freq_time data without channels
• 2887 - return all channels from an EDF file with multiple sampling rates
• 2893 - reading fails for parcellation dconnseries generated by wb_command
• 2899 - create template layouts for EGI nets
• 2900 - correction to ft_sourceplot sulci/gyri color
• 2901 - implement a FieldTrip usage tracker
• 2902 - extend EEGLAB integration regression test script
• 2903 - replace the FT findcluster function with the refactored version from LIMO
• 2908 - implement egi_mff writing
• 2909 - improve data representation for CIFTI dscalar files
• 2910 - uint64 arithmetic operations can crash Matlab
• 2912 - ft_platform_supports relies on matlabversion (which it intends to replace)
• 2918 - support reading and writing of BrainVision BVEF electrode position files
• 2919 - interactive functionality ft_prepare_neighbours broken
• 2922 - iscolumn is missing in matlab 2010a
• 2923 - add cfg.trialfun=ft_trialfun_general to tutorials
• 2924 - use neuralynx mex files
• 2928 - ft_volumesegment fails on 2015a
• 2930 - Inconsistencies in plotting with recent Matlab versions (Matlab2015a) and previous versions (2012b)
• 2932 - channel neighbours for Yokogawa KIT system with 208 channels
• 2934 - keep a number of (external) channels constant when using ft_databrowser on MEG data
• 2944 - add java implementation for openbci and realtime buffer server
• 2946 - improve exporting of FieldTrip data to BESA for external processing
• 2949 - ft_selectdata does not work with comp (IC) data
• 2951 - implement lagged coherence in ft_connectivityanalysis
• 2955 - implement saturation option in ft_plot_mesh
• 2956 - implement spectral interpolation as alternative to zeroing in DFT filter
• 2957 - revamp functionality to convert between different representation of freq-domain data
• 2958 - ft_connectivity_mim: implement functionality
• 2961 - ft_selectdata: unexpected behavior of ft_selectdata when selecting across time
• 2964 - add support for blackrock data
• 2965 - ft_checkdata errors for average data with dimord of rpt_chan_time but no trial field
• 2966 - ft_databrowser not creating cfg.headerfile for EDF
• 2967 - MOVC - mother off all virtual channel bugs
• 2968 - document the interpolation of an atlas onto a MNI-coregistered source model grid
• 2969 - document the use of virtual channels in relation to atlas based ROIs
• 2970 - document how (virtual channel) connectivity can be plotted
• 2973 - implement getdatfield as replacement for parameterselection
• 2982 - cfg.debug=saveonerror should be supported by all main FT functions
• 2983 - add probabilistic atlas of 22 visual areas
• 2986 - ft_volumerealign fails when realigning mri and headshape in 'cm'
• 2987 - support user specification of analog trigger channels, e.g. in EDF files
• 2988 - have ft_combineplanar also return the orientation in case of method=svd
• 2989 - make FieldTrip compatible with MATLAB 2015b
• 2991 - implement support for the *.besa file format
• 2992 - ft_statfun_correlationT is prone to cross-condition bias when creating the permutation distribution
• 2994 - ft_freqstatistics crash when dimord is 'subj_freq_time'
• 2995 - selection of channels does not work in browse_simpleFFT
• 2997 - implement saturation in ft_sourceplot for surfaces
• 2998 - implement support for the Tobii eye tracker
• 3000 - saturation masking in ft_plot_matrix/topo leads to grey colors for many colormaps
• 3001 - inside field is not kept in the output structure during the call to ft_math
• 3002 - ft_defaults crashes when checkMultipleToolbox tries to call ft_warning
• 3003 - wiki page (getting started / yokogawa) crashes
• 3006 - document the representation and conversion between sparse and full CSD matrices
• 3007 - provenance handling breaks output of ft_detect_movement
• 3013 - ensure consistent handling of axis and voxel dimensions when ortho-plotting
• 3016 - give Simon access to all relevant development tools
• 3018 - ft_connectivity_granger: write documentation page: how NOT to compute Granger causality with spectral factorization techniques
• 3026 - ft_preprocessing does not reject artifacts identified with ft_rejectartifact
• 3027 - improve support for NIRS data from Homer
• 3029 - ft_sourceanalysis: failure when using 'dics' as method with fourier input
• 3031 - implement ft_volumereorient
• 3033 - support on-the-fly combined planar data in ft_databrowser and elsewhere
• 3034 - ft_selectdata does not take nanmean avgoverdims
• 3038 - make consisten use of "unit" instead of "units"
• 3039 - the source model on disk for beamforming_extended is inconsistent with the template
• 3040 - ft_connectivity_mutualinformation is missing
• 3042 - implement support for reading/converting brainstorm cortical surface+labels
• 3043 - allow frequency specific baseline in ft_freqbaseline
• 3044 - problem reading past the end of the file with EDF
• 3047 - update Brain Connectivity Toolbox to latest version
• 3049 - migrate from svn to github
• 3054 - implement DOG as alternative to Morlet
• 3056 - lcmv beamformer source solution mismatch topography
• 3057 - lcmv beamformer source solution mismatch topography
• 3059 - implement, extend, and document ECoG/sEEG visualization tools
• 3061 - implement support for output files from structure.io sensor 3D scanner
• 3065 - version number and provenance need to be updated to reflect svn->github migration
• 3066 - reimplement the dashboard for github
• 3068 - ft_warning crashes when stack contains > 63 character name
• 3070 - reducerank default is not optimal for MEG HPI coils
• 3079 - ensure consistent handling of figure titles
• 3081 - ft_volumerealign error due to pnt/pos
• 3082 - ft_statfun_indepsamplesregrT does not correct df's for multiple independent variables
• 3089 - implement dipole fitting for combined magnetometer and planar gradiometer data
• 3090 - ft_volumerealign: intensity sliders fall outside the figure window
• 3091 - merge the two versions of matlablt2010b
• 3094 - point for discussion: warning about p-value confidence intervals in ft_statistics_montecarlo
• 3095 - ft_convert_coordsys fails without spm on the path
• 3096 - make a graphical channel selection
• 3099 - support multiple buffers in buffer.exe stand-alone application
• 3101 - implement support for the TMSi poly5 format
• 3106 - openmeeg computation fails for MEG
• 3107 - ft_volumerealign problem with scalp.pos / scalp.pnt
• 3112 - kiel workshop issues - connectivity tutorial
• 3113 - kiel workshop issues - torso MRI
• 3114 - kiel workshop issues - FEM slow
• 3115 - kiel workshop issues - BEM failed
• 3116 - kiel workshop issues - OpenMEEG failed
• 3117 - kiel workshop issues - refine failed
• 3121 - ft_databrowser channel color changes when identifying channels in viewmode = butterfly
• 3123 - ft_databrowser keyboard command queue is erratic
• 3124 - ft_sourceanalysis does not select multiple frequencies with cfg.foilim
• 3126 - implement support for the NeurOne EEG file format
• 3127 - implement a pipeline for MEG source reconstruction if no MRI is available
• 3128 - incorrect dimord after ft_connectivityanalysis
• 3132 - hasdata variable in ft_layoutplot is not initialized
• 3133 - make an example page that demonstrates SSVEP/SSAEP analysis
• 3135 - ft_channelselection selects channels it shouldn't because wild card is added
• 3137 - ft_databrowser: upper and lower channels outside of plotting area when cfg.viewmode='vertical'
• 3139 - improve support for R2016a
• 3141 - extend ft_defacevolume to deface (headshape) meshes, e.g. those from the 3D scanner
• 3142 - add coordsys field consistently to more data-objects
• 3143 - ft_prepare_neighbours error with unexpected channel unit
• 3145 - ft_nargin between two versions of fieldtrip
• 3146 - translate vlim and hlim in multiplot to ylim and xlim
• 3147 - interp_gridded is broken
• 3148 - test_old_ft_sourceanalysis_lcmv fails because biomag2010 data is missing
• 3149 - ft_prepare_mesh/ft_prepare_headmodel fails in tutorial
• 3150 - critical value for indepsamplesT
• 3151 - round(true) fails on R2014b
• 3152 - Undefined function 'mvnrnd' for input arguments of type 'double'.
• 3153 - ft_statfun_pooledT fails on 2015b (Field assignment to a non-structure array object), works on 2015a
• 3156 - add 10-20 model-based electrode placement code to ft_electrodeplacement
• 3157 - implement square coils in ft_plot_sens for elekta
• 3159 - some test scripts don't specify a correct memory or wall time requirement
• 3163 - error in pos2dim - can't index with NaNs
• 3172 - ft_plot_sens doesn't work with electrode templates
• 3173 - ft_checkdata fails if mesh doesn't have a .tri field
• 3175 - ft_hastoolbox('spm',1): SPM toolbox not installed
• 3179 - merge read_layout between cosmo and fieldtrip
• 3180 - uicontrol is not supported on headless servers for ft_qualitycheck
• 3182 - check averaging and keeptrials in freqanalysis+freqdescriptives
• 3183 - cfg.outputfile saves default variable names that are difficult to guess
• 3186 - compat/matlablt2010b is not consistent
• 3187 - matlab version specific behavior of cfg-tracking (cleanup)
• 3194 - prepare_mesh_hexahedral uses .pnt instead of .pos
• 3195 - make a fast implementation of inside/outside detection of source model points in a FEM volume conduction model of the head
• 3196 - prepare_mesh_tetrahedral is missing for SIMBIO tetrahedral meshes
• 3197 - matlab version dependent unpredictable failure of qsubfeval
• 3198 - add the sample number as extra channel for openbci
• 3199 - tracker fails because java JVM not available
• 3202 - improve support for Tucker Davis Technologies (TDT) files
• 3204 - ft_inside_vol reverted to older version
• 3205 - Expand ft_eletroderealign with the functionality of inward/outward shifting of electrode positions.
• 3208 - visualize electrode to headshape distance with red/blue circle projection onto scalp
• 3209 - ft_surfacerealign does not follow coding standards
• 3210 - implement a fieldtrip realtime buffer client in node js
• 3213 - document the audio and video of the Marseille connectivity workshop
• 3215 - support method=nan for channelrepair
• 3217 - implement width and gwidth both as vectors in ft_specest_wavelet
• 3222 - point to natmeg documentation and video's
• 3225 - there are two copies of ft_channelselection
• 3227 - ft_datatype_source chokes on 'rawtrial' source level data with filters kept
• 3228 - ft_volumesegment: implement dartel as an alternative way for segmentation
• 3229 - ft_apply_montage generates NaN elec.chanpos
• 3230 - Push buttons in ft_anonimizedata don't work
• 3235 - improve ft_volumereslice
• 3236 - Problem with simbio FEM
• 3237 - Can Fieldtrip test data used with dccnpath be made available?
• 3238 - improve support for partial artifact handling using NaNs
• 3239 - ft_read_event cannot import from .nex files where any variables have 0 timestamps
• 3240 - Please clarify openmeeg opening web browser behaviour
• 3241 - improve the dashboard batch test scripts and resolve some regression errors
• 3242 - ensure that all ft_plot_xxx functions have an example in their help
• 3243 - cannot compile "peer" code using Makefile on OSX
• 3244 - modules should remain stand-alone
• 3245 - we should have a CTF151 layout with the fancy helmet
• 3246 - colormap editor is not supported in ft_sourceplot with method=ortho
• 3247 - ft_plot_slice does not add slices to existing figure
• 3248 - ft_plot_sens does not allow to specify the colors of the electrodes
• 3249 - we should add the ctf151 helmet layout to the wiki
• 3250 - the lambda option in the various beamformer source analysis methods needs to be better documented
• 3251 - default conversion into 'cm'
• 3252 - hpos and vpos are used in two different ways
• 3254 - ft_sourceplot does not initialise ft_progress based on cfg.feedback
• 3255 - align_ctf2spm does not support spm12
• 3256 - output of ft_componentanalysis should be timelock+comp when input is timelock
• 3260 - inconsistent surface/cortex colors
• 3261 - ft_multiplotTFR with maskstyle = 'saturation' with non-evenly spaced frequency bands shows incorrect axis labels
• 3262 - external/fileexchange functions (by extension, FieldTrip?) not considered free software by GNU Octave community
• 3265 - support FT buffer on win64
• 3266 - mesh smoothing
• 3268 - make a consistent interface to the functions that return spherical meshes
• 3269 - OCTAVE: fixname crashes with empty string input
• 3270 - support common filter approach with dics coherence with a refdip
• 3272 - ft_volumesegment should show tissue volumes
• 3275 - allow sEEG (i.e. not ECoG but depth electrodes) to be visualized with ft_sourceplot
• 3276 - ft_electrodeplacement should not show the "scan" option when a single input is given
• 3277 - speed up ft_statfun_actvsblT
• 3280 - electrode locations are not read from CTF *.ds res4 file
• 3281 - implement ft2audio
• 3283 - Values of variables in tutorial "Preprocessing and analysis of spike-train data" are not reproducible
• 3284 - regression tests failing for older MATLAB versions
• 3285 - how to keep information about the montage and/or referencing that is applied to data
• 3286 - bioimage suite electrodes are displaced
• 3287 - revise the implementation of the ft_append functions
• 3288 - SPM12 mex files fail with Matlab 2017a
• 3291 - pass showcallinfo recursively to lower-level functions
• 3292 - use ft_getopt instead of old "isfield" style
• 3293 - ft_estimate_units estimates units of iEEG electrodes incorrectly
• 3296 - trial selection fails in ft_multiplotER (and possibly ft_multiplotTFR)
• 3297 - reading triggers from CTF275 data from the new acquisition computer fails
• 3301 - padding is not executed when the padding interval is shorter than the trial's length
• 3304 - consolidate the handling of coordsys
• 3306 - implement an interface for the openbci gangion board
• 3307 - bitcmp error in read_trigger (Matlab 2014b)
• 3313 - make a function for anatomical image homogeneity correction
• 3314 - isequalwithequalnans is not recommended. Use ISEQUALN instead.
• 3318 - implement support for the 16-channel OpenBCI cyton board
• 3321 - ft_timelockstatistics functionning different from what is said on the wiki and in the help
• 3322 - ft_timelockstatistics using spm 8, not compatible with Matlab 2017
• 3325 - Proposed enhancement to coloring of sensors/electrodes in ft_plot_sens
• 3329 - Can't run ft_defaults; Undefined function 'ft_platform_supports' for input arguments of type 'char'.
• 3330 - Invalid MEX File
• 3333 - default_interpmethod not defined in ft_plot_topo, when handling nans
• 3334 - create ft_appendlayout
• 3336 - get rid of confusing stack trace of ft_errror
• 3337 - implement ft_artifact_nan
• 3338 - ft_redefinetrial returns incorrectly nan-padded data
• 3339 - it would be nice if trialinfo could be a table rather than a numeric array
• 3340 - fiducial clicking is similar to electrode clicking and should become shared code
• 3341 - the cfg.method between the different ft_xxxrealign should become consistent for 'interactive' and 'fiducial'
• 3342 - why does ft_freqbaseline normalize trials using the trial-specific baseline instead of the average baseline?
• 3343 - ft_senstype, and ft_senslabel in particular, do not work reliably on iEEG data
• 3345 - the multi, single and topoplotting functions should use ft_selectdata
• 3346 - keeptrials in ft_timelockanalysis should not output avg/var/dof
• 3347 - ft_databrowser and ft_rejectvisual should use private/chanscale_common for scaling
• 3348 - the comment (COMNT) should be updated when using the hotkeys in multiplot/topoplot
• 3349 - Octave fails running ft_defaults due to using non-functional form of ft_warning
• 3354 - sampleinfo should be updated after using ft_selectdata to make a latency selection on raw or timelocked data.
• 3357 - padding for spectral interpolation should be removed from ft_specest_hilbert
• 3358 - ft_multiplotTFR fails for non-standard dimord
• 3359 - plotting of bivariate data needs to be tested
• 3360 - bug in ft_read_header.m in blackrock_nsx section
• 3361 - highlight symbol is not correct in topoplot
• 3363 - getdimord warning and cfg.comment not working in ft_topoplotIC
• 3364 - ft_warning returns incorrect warning state if you change something
• 3365 - invalid spm_bwlabel mex mac file under matlab2017b
• 3366 - implement REST re-referencing for EEG data
• 3367 - ft_datatype qualifies a mesh structure as 'source+mesh'
• 3368 - error writing .gdf (or .eeg) data
• 3369 - implement a elekta neuromag fif log file reader
• 3371 - OS High Sierra seems to make ft_selectdata (and possibly other functions) get stuck in a loop
• 3373 - implement neuromag electrode file format reading and writing
• 3374 - implement neuromag quaternion transformation
• 3375 - support visualization of realistic head and dewar models for ft_realtime_headlocalizer
• 3379 - ft_redefinetrial fails on overlapping trials
• 3381 - host a copy of the wiki and ftp server in China
• 3382 - translate some of the documentation to Chinese
• 3383 - provide closed captions for the video lectures
• 3384 - provide Chinese subtitles for some of the video lectures
• 3387 - ft_fetch_sens does not fetch the tra field
• 3388 - implement auto-appending for Elekta fif files
• 3389 - extend ft_qualitycheck for Elekta data
• 3390 - implement an ft_groupqualitycheck function
• 3392 - ft_preproc_padding index exceeds dimensions in padend
• 3393 - ft_sourceplot cannot deal with trialaveraged data following ft_selectdata
• 3394 - imotions timestamps are not accurate enough
• 3395 - implement decimation to approximately 1Hz
• 3396 - add columns to read imotions markers from
• 3398 - improve ft_prepare_layout when only few electrodes are included
• 3399 - ft_appenddata does not keep the .fsample field
• 3400 - ft_realtime_headlocalizer does not work in the MEG-LAB
• 3401 - ft_regressconfound produces p-values between 0 and 2
• 3402 - external/gifti mexfiles presumably not compatible with matlab v2017+
• 3403 - ft_artifact_threshold should support partial artifacts
• 3404 - ft_apply_montage makes up (missing) channels
• 3405 - Unable to execute ft_prepare_headmodel due to MEX bug "Library not loaded"
• 3406 - durations events imotions not correct
• 3407 - imotion files can have spaces in column name
• 3408 - make a youtube video that explains how to use the Structure Sensor
• 3410 - ft_headmodel_dipoli doesn't work
• 3412 - imotions2fieldtrip fixtime = 'squash' not robust for missing values
• 3413 - MUSIC computation doesn't account for inside vs. outside elements of leadfield
• 3415 - implement conversion between Ledalab and FieldTrip
• 3417 - Crashing during ft_freqstatistics
• 3418 - Crashing during ft_freqstatistics
• 3420 - implement Pearson's correlation in ft_statistics_stats
• 3421 - ft_prepare_headmodel failing on more than 5 conductivities
• 3422 - archive the video lectures of the 2018 Nijmegen MEG toolkit
• 3423 - Analysis of human ECoG and sEEG recordings: data incomplete
• 3424 - Analysis of high-gamma band signals in human ECoG: data analysis error
• 3426 - general cleanup and bookkeeping at the end ft_scalpcurrentdensity
• 3427 - ft_spike_redefinetrial mentioned in documentation of ft_datatype_spike
• 3428 - TimeStampPerSample or TimestampPerSecond in ft_spike_maketrials?
• 3429 - read_neuralynx_ncs directs to wrong mex file version
• 3431 - Inconsistent documentation "Computing the phases of spikes relative to the ongoing LFP"
• 3432 - Bibliography of references missing in spike tutorial documentation
• 3433 - implement ft_respiration
• 3437 - ft_selectdata breaks on double latency parameters
• 3438 - improve support for SKANECT files
• 3443 - coherence
• 3445 - magnes 3600 issue with reference coil locations in file
• 3446 - collect video material from 2018 Nijmegen MEG toolkit
• 3453 - expose the number of iterations in concentric sphere model for EEG
• 3457 - ft_read_event and ft_read_header does not work correctly
• 3462 - ft_sourcestatistics fails on output from ft_sourcegrandaverage
• 3475 - ft_plot_sens wont plot labels of a linear array of electrodes