core

Back to the main page.

• 2 - megplanar fails on TFR input data
• 3 - incorrect detection of senstype and inconsistent grad.type after megplanar
• 4 - appenddata does not check the consistency of the grads in the input
• 5 - ft_freqdescriptives does not work for defined time and frequency bins
• 6 - add cfg.inputfile and cfg.outputfile to all fieldtrip functions
• 7 - inconsitent absmax and maxabs for the scaling
• 8 - clusteranalysis avgoverchan
• 9 - devide by zero in timelock analysis
• 13 - include bitsi from google code repository to fieldtrip/external
• 15 - topography on databrowser square
• 16 - do not redraw topoplot of component when scrolling through trials
• 17 - topoplotTFR labels
• 18 - bug in PSI calculation in connectivityanalysis
• 19 - the length of a vector is sometimes used, whereas numel is more robust (before/after vectorization)
• 20 - the help documentation in ft_preprocessing does not follow the guidelines
• 21 - select channels/components (as artifacts) in databrowser
• 22 - connectivityanalysis channelcmb specification
• 23 - error in clusterplot
• 24 - wiki does not list all topoplots in the search result
• 25 - struct2single and struct2double are missing
• 26 - implement cfg.precision for all functions
• 27 - ensure consistent time axes in ft_resampledata (without rounding errors)
• 28 - ensure consistent handling of offset/time/trl
• 29 - fix subspace projection in beamformer_dics and beamformer_lcmv
• 31 - cfg.zlim in clusterplot does not work
• 32 - topoplotTFR plotting
• 33 - Error in ft_timelockstatistics
• 35 - channel selection in ft_connectivityanalysis
• 36 - ft_channelcombination should check for auto-combinations in the input...
• 37 - ft_connectivityanalysis crashes when input is powandcsd and channelcmb = {'all' 'all'}
• 38 - ensure correct trl handling in selectdata
• 39 - bug in selectdata:
• 40 - Bug in topoplotER with highlight channel
• 43 - small bug using ft_topoplotER with combined EEG+MEG
• 44 - this is a bug for testing bugzilla
• 45 - yet another bug for testing
• 46 - ft_connectivityanalysis coh/psi bug
• 47 - clusterstat emty neighbourhood
• 48 - warning off should always revert to previous warning state
• 49 - ft_topoplotIC interactive
• 50 - databrowser cannot deal with overlapping trials
• 51 - bug in for-loop for plotting electrode numbers in ft_topoplotER
• 54 - separate conversions and fixes from checkdata
• 56 - test the email list
• 57 - the fieldtrip logo should be available on the wiki
• 58 - another test bug
• 59 - ft_sourceinterpolate crashes on
• 60 - Error in clusterstat with avgoverchan = 'yes'
• 62 - spm_brainwarp is missing from fieldtrip/external/spm2
• 65 - cfg.headerformat and dataformat should be supported in all ft main functions that read datathat
• 68 - double presence in svn, both file and external
• 69 - publix/sourcerestyle and public/private/fixsource are replications
• 71 - Bug in ft_freqstatistics
• 73 - there is a number of functions that calls read_header without passing the user-specified headerformat along
• 74 - inconsistent use of cfg.eventfile and cfg.event
• 75 - apply_montage should be renamed to ft_apply_montage
• 83 - flipped volume in ft_volumesegment
• 84 - keep is both a var and function name
• 86 - topoplotER cfg,interplimits = 'electrodes' does not plot outside of head
• 89 - use bwlabeln from spm8 as alternative to image processing toolbox
• 90 - exclude external/xxx from fieldtrip-lite on ftp server
• 91 - include afni in fieldtrip/external
• 93 - duplicate ft_plot_topo and plot_topo
• 94 - cfg.outputfile is incompatible with cfg.trackconfig=cleanup
• 95 - merging ft_default.trackconfig and cfg.trackconfig fails
• 96 - ft_prepare_leadfield does nothing
• 97 - if the user specifies cfg.trials=[] this should result in no trials being processed. Now all trials are processed
• 98 - version tracking in high level ft-functions is backward compatible to pre matlab 6.5
• 101 - argument time undefined in ft_spiketriggeredspectrum
• 102 - cfg.inputfile for ft_prepare_bemmodel with 3 input options
• 104 - topoplotTFR cannot correctly refer to topoplotER with cfg.inputfile
• 105 - Bug in ft_prepare_mesh breaks SPM8, please fix urgently
• 106 - trl in checkdata
• 115 - ft_prepare_mesh not robust in dealing with inputfile
• 116 - Feature that was used by SPM disappeared
• 118 - make ft_prepare_layout detect identical channel locations
• 119 - plotting functions renamed without fixing the ft_ prefixes in the code
• 121 - selectdata with tf-data as input with avgoverfreq for a given foilim gives in the output xxx.freq which is not the average of the requested range
• 122 - ft_rejectartifact doesn't work with data in input when calling artifact_xxx
• 123 - statfun_depsamplesT and statfun_actvsbslT cannot manage nans
• 127 - error using flag for improved freqanalysis
• 128 - options for overlapping trials?
• 130 - ensure robust behaviour for freqanalysis when user specifies both cfg.channel and cfg.channelcmb
• 133 - ft_connectivityanalysis averaging trials bug
• 134 - ft_spiketriggeredspectrum is broken due to new specest_nanfft
• 138 - loadvar and savevar shoudl default to a meaningful variable name and not to 'data'
• 157 - ft_resampledata deletes cfg.trl
• 170 - use other toolbox license check
• 172 - trialfun_general crashes with cfg.trialdef.eventtype='gui'
• 179 - plotting problem with connectivityresults
• 180 - make ft_multiplotXXX and ft_topoplotXXX robust against subset of all channels in input, in case of connectivity data
• 181 - unknown method in ft_electroderealign
• 182 - ft_rejectcomponent cannot apply projection on grad.tra if nargin==2
• 193 - deprecate cfg.sourceunits and cfg.mriunits
• 197 - check which functions need to pass on trialinfo and sampleinfo
• 199 - ft_sourceanalysis with lcmv and precomputed filters and single trial input does not output a pow-field
• 202 - ft_databrowser: add showing of events in vertical view mode
• 203 - add ft_denoise_pca to the release of fieldtrip
• 204 - ft_freqanalysis crashes when specest implementation is used
• 206 - ensure consistent use ouf cfg.previous
• 207 - use tic and toc with an explicit timer name in sourceanalysis
• 208 - ft_ prefix inverse module
• 209 - volumerealign does not output the cfg that was used in the output mri
• 211 - add new spike functions to fieldtrip main trunk
• 215 - freqanalysis depends on the matlab function window, from the signal processing toolbox
• 216 - to do: develop ft_qualitycheck
• 217 - labelcmb2indx should be a private function
• 218 - add matlab version to output cfg.version
• 220 - freqanalysis: if cfg.foi contains frequencies above Nyqiest an error should be given
• 221 - ft_freqstatistics (montecarlo) should throw error if receiving input from ft_freqgrandaverage
• 225 - what's the effect of slow drifts in my data on my spectral decomposition?
• 226 - dof of new implementation of ft_freqanalysis is inconsistent with the old one
• 228 - preprocessing option cfg.blc should be renamed
• 229 - ft_selectdata keyval 'rpt', [...] sorts the requested trials with fourier-input
• 233 - compilation of mex files does not work on matlab71
• 234 - conditional defines in Makefile not allowed on older RedHat version
• 237 - ft_selectdata cannot handle subj_chan_freq_time
• 242 - consistent binary executables
• 253 - missing function in ft_connectivity_granger
• 257 - ft_freqanalysis_wltconvol, fourier not valid?
• 271 - the use of matlabversion fails for 2010a and b because they are represented as 7.10 and 7.11
• 281 - new implementation of freqanalysis throws errors if ntrials = 1
• 292 - ft_freqanalysis does not work with variable length trials and method = 'mtmfft'
• 293 - source statistics on timeseries (source.mom) does not work
• 297 - warning takes sprintf-like input directly
• 298 - create mex file implementation of keyval
• 301 - ensure that the mex compile scripts are consistent throughout
• 305 - trunk/ft_freqanalysis_mtmconvol/mtmfft still exists, including their compats
• 307 - rename fieldtrip/public into fieldtrip/utilities
• 308 - get rid of realtime/utilities
• 310 - replace all calls to preproc by calls to ft_preprocessing, merge preproc with ft_preprocessing again
• 311 - throw a warning in all compat/*.m un-prefixed version to encourage users to start using ft_*
• 312 - statistics_* should be ft-prefixed
• 313 - add forward model computation for FNS FEM solver
• 315 - fieldtrip/private/preproc() should be replaced by ft_preprocessing where possible
• 316 - the public functions should be ft_ prefixed
• 317 - hasyokogawa should be merged with ft_hastoolbox
• 325 - statfun_depsamplesT units of observation issue
• 328 - ft_timelockgrandaverage should either output an average or individual data
• 329 - test for the new email address
• 334 - specest_mtmconvol shifts time-bins 1 bin to the right, it shouldn't
• 336 - add explicit checks for non-used cfg options in ft_freqanalysis
• 338 - ft_topoplotER is broken after the last change allowing for channel selection
• 339 - timelock data structure should not contain fsample
• 344 - ensure consistent handling of balancing throughout the code
• 346 - statfun_xxx documentation should include explanation that ft_xxstatistics should be called
• 348 - make spatial clustering on 2D 'meshes' more general
• 349 - don't understand a few lines in ft_volumerealign
• 352 - after switching the warning off, it should be switched on again
• 353 - ft_sourcegrandaverage should work with source datatypes only
• 361 - prepare_dipole_grid should be renamed into ft_prepare_sourcespace
• 365 - testdata/mri directory does not contain any files
• 366 - pos2dim3d behaves as if it is pos2dimNd
• 367 - megrealign example does not work
• 368 - freqanalysis_old always throws an error requesting to call it directly
• 369 - No horizontal scaling possibility in ft_databrowser on noncontinuous data
• 370 - private/prepare_time_freq_data calls fixdimord
• 371 - check whether keepoutside can be removed from ft_checkdata
• 372 - ft_databrowser shortcut ctrl+[num] errors when no artifacts are defined
• 374 - Plotting does not allow selection on certain frequency bands or time windows only
• 380 - implement ztransform/standardize in rejectvisual
• 381 - ft_write_volume should support nifti
• 383 - selecting a subset of trials from source data (pcc mom) does not work
• 386 - reimplement source2sparse and source2full for the new source representation
• 393 - implement a warningonce function
• 397 - move private/prepare_dipole_grid to ft_prepare_sourcemodel in main directory
• 398 - the function isstr is still being used, although it is deprecated by matlab
• 402 - too many warnings on sampleinfo field when converting ERF into raw data structure with 1 trial
• 405 - Establish a closer distinction / relation between ft_databrowser and ft_rejectvisual
• 412 - correcttail option in montecarlo has incorrect default
• 413 - add eeglab2fieldtrip to the fieldtrip/external/eeglab directory
• 420 - please address the issues below
• 425 - using trackconfig = 'on' does not work robustly
• 426 - inconsistent output of statistics_montecarlo with correcttail='prob'
• 429 - ft_electroderealign fails with cfg.method = interactive
• 430 - compat/stats and compat/signal should go
• 431 - ft_electrorealign should call the plotting function from the plotting module
• 432 - statfun_correlationPearson should be implemented
• 436 - ft_rejectvisual makes inefficient (or no?) use of ft_checkdata
• 438 - ft_checkdata should get siblings like ft_checkraw, ft_checkfreq, ft_checksource, ft_checkvolume
• 447 - output preprocessing .trial if input is .avg
• 452 - cpompat functions are being called by trialfun_xxx
• 455 - determine whether ft_componentbrowser can be removed
• 458 - fixdimord cannot handle dimord voxel
• 462 - there's mixed usage of the nanXXX and nan_XXX throughout the code
• 464 - ft_freqbaseline looks outdated and inefficiently implemented
• 468 - statistics_montecarlo / statfun_indepsamplesF behaves strangely...
• 470 - some junk in the multivariate directory needs to be removed
• 471 - fix the inside detection for a dipole grid in case of a halfspace model
• 473 - fix the svn:externals for peer and openmeeg
• 474 - too many file externals in fieldtrip/private
• 475 - ft_inside_vol should be used instead of find_inside_vol
• 477 - implement an ft_examplefunction function
• 478 - implement an svn hook to replace the svn externals
• 481 - the tutorial datasets have to be anonimized
• 486 - implement getopt, setopt and checkopt fiunctions
• 487 - warning message is too long
• 488 - planarchannelset, and therefore ft_combineplanar, uses senstype instead of ft_senstype
• 489 - savevar (i.e. cfg.outputfile) should use an uncompressed format if the variable is small
• 491 - ft_channelrepair - mismatch in fixed channels
• 498 - Numerical accuracy affecting usage of "nearest" on time axes
• 499 - ft_databrowser does not support variable-length trials
• 500 - fixtrialdef throws an inconsistency warning if data has been resampled
• 502 - replace keyval by ft_getopt
• 503 - compile some of the missing mex files on win32 and win64
• 505 - p waarden > 1 met freqstatistics
• 509 - databrowser does not plot artifacts (and events) when drawing components
• 510 - spm not added to path (for call to spm_bwlabel)
• 518 - ft_databrowser fails when cfg.dataset is specified and no data argument is provided
• 519 - databrowser expects a topo from the input, which fails when reading from file
• 520 - Neighbourselection crashes when providing a layout and no neighbourdist
• 521 - channel selection in ft_multiplotTFR
• 523 - strange problems in a sourceanalysis pipeline
• 524 - check transformation matrices before and after writing and reading freesurfer MRIs
• 525 - ft_databrowser issues with scaling and viewmode when data is read from disk
• 526 - ft_freqdescriptive sets hasrpt if dimord contains 'subj', but errors later when no dimord does not contain 'rpt'
• 527 - ft_selectdata does not support dimord 'subj'
• 528 - ft_fetch_data does not correctly check whether requested data falls within 1 trial
• 529 - ft_preprocessing should support padding for continuous data in-memory
• 530 - check description of design matrix conditional on required statfun
• 532 - implement a ft_crossfreqanalysis function
• 538 - ft_freqstatistics errors on connectivity data made from fourier data with dimord chan_chan
• 540 - wavelet convolution in ft_freqanalysis flips phase of signal
• 541 - try-catch construction incompatibe with matlab74
• 543 - implement coordinate transformation for itab system
• 544 - implement cfg.downsample for ft_volumesegment
• 545 - ft_selectdata should support toilim for source input
• 549 - ft_volumesegment crashes on ft_getopt
• 550 - ft_volumesegment crashes on SPM, while segmenting its own template
• 552 - ft_volumesegment gives a segmented structure with 3X1 dim
• 554 - ft_sourceanalysis (method:mne)
• 556 - implement ft_prepare_headmodel
• 557 - ft_volumereslice on 'ctf' aligned mri data
• 561 - not able to plot (topo/singleTFR nonlinear (time/freq) axis
• 563 - ft_sourcedescriptives gives error because of missing dim in output of ft_sourceanalysis
• 568 - ft_volumesegment now outputs wrong dimensions of dim field
• 569 - should ft_plot_vol use cfg instead of key-value pairs?
• 570 - the function 'channelposition' cannot handle some datatypes properly
• 572 - ft_megplanar outputs old ICA channel labels (and too many channels)
• 575 - neighbourselection now has option 'method' but this crashes when you call it from the stats functions
• 576 - timelock_neuromag122 seems to contain data from a 306-channel system
• 579 - ft_checkdata can get the wrong dim with length() on line 761; use size() instead
• 582 - 'q' in ft_databrowser doesnt work when in 'component' viewmode/input
• 583 - ft_selectdata probably has difficulties if nrpt/nsubj is equal to any of the other dimlengths.
• 586 - Problem with ft_selectdata
• 587 - ft_volumesegment accepts priors only for humans, default SPM options are rigid
• 589 - freqanalysis output doesnt contain cfg.previous anymore
• 590 - wltconvol gives weird results in lower frequencies
• 591 - ft_neighbourselection should not be called by other FT functions
• 593 - ft_databrowser crashes on data which was obtained with ft_appenddata
• 596 - plotting of events in ft_databrowser is broken
• 599 - problems with lfp test data on /home/common
• 603 - ft_qualitycheck cronjob should save matfiles to Odin
• 619 - easycapXX-avg layouts have to be improved
• 622 - overall peak-to-peak value calculation instead of channelwise peak-to-peak in ft_artifact_threshold
• 624 - ft_timelockanalysis doesn't work with cfg.vartrllength=1 anymore
• 625 - cfg.statistic='ttest' not exist in prepare_design.m
• 626 - ft_channelselection
• 627 - ft_sourceplot does not plot anatomy & fun correctly
• 631 - reorganize the fieldtrip/template directory
• 634 - add spherical spline interpolation to ft_channelrepair
• 635 - ft_channelrepair should use cfg.neighbours instead of cfg.neighbourdist
• 637 - ft_appenddata should be extended to also support appending timelock, freq and source data
• 638 - add missing people to fieldtrip-bugs mailing list
• 639 - fieldtrip-lite should exclude the templates and the externals
• 640 - make trialfun, statfun and browsefun behave consistently
• 641 - hastrialdef should be renamed into hassampleinfo in ft_checkdata
• 642 - ft_channelselection cannot handle channelexclusion of channels denoted with a *
• 644 - ft_channelrepair does not work on missing channels
• 646 - electroderealign should be improved for yokogawa/MEG and should be renamed into sensorrealign
• 647 - create a fieldtrip/warp toolbox
• 648 - ft_uilayout and layoutgui should perhaps be merged
• 649 - ft_sourceplot option cfg.inputcoordsys should be deprecated
• 650 - user feedback in ft_sourceplot needs to be cleaned up
• 651 - the prepare_design function should be deprecated/removed
• 653 - trialfun_trial should be enhanced to also return the trigger code (if possible)
• 654 - update functions using legacy trl matrix to use sampleinfo (and offset) instead
• 656 - ft_timelockanalysis: output should have a dimord consistent with its fields
• 659 - add tic/toc to all functions and include in output cfg
• 660 - Undefined function or variable 'dataindx' in ft_megplanar using planarmethod = sourceproject
• 662 - ft_megplanar should be made consistent with ft_neighbourselection
• 663 - ft_prepare_layout fails for yokogawa64_planar
• 664 - private/sensortype.m should be deprecated
• 665 - ft_definetrial / trialfun_general fails
• 667 - error in artifact detection tutorial
• 668 - ft_artifact_zvalue causes a steadily increasing memory use
• 670 - ft_channelselection cannot handle all regular 'regular expressions'
• 673 - output of ft_dipolefitting is incorrect
• 674 - multisphere function not found
• 675 - ft_freqstatistics errors with single-dimension data (avgovertime/chan/freq='yes')
• 676 - ft_appenddata should ensure consistent handling of sampleinfo etc when appending over channels
• 684 - channelposition returns incorrect results on grad-structure in attached file
• 693 - channelposition needs to be made robust.
• 697 - potential issue with ft_freqstatistics
• 701 - ft_volumesegment skullstrip output is smoothed
• 702 - allow feedback to be turned off in ft_freqanalysis
• 703 - trialfun_general miscalculates trldur if no poststim but prestim is given?
• 705 - ftFuncTimer is missing in ft_connectivitysimulation
• 706 - ftFuncTimer is also not initialized in ft_mvaranalysis
• 708 - re-implement ft_timelockstatistics
• 709 - create ft_connectivity_xcorr
• 710 - create faq on the representation of bivariate frequency domain data
• 711 - implement an interface to the graph analysis toolbox by rubinov/sporns/kötter
• 712 - build in the non-homogeneous smoothing at the source level
• 714 - make a mex implementation of nanmean, nanvar etc
• 715 - ft_sourceanalysis with method = pcc should pass on trialinfo
• 716 - ft_megrealign misbehaves when realigning
• 717 - ft_getopt does not return an output if the input is something else than a cell-array, a struct, or a config object
• 718 - ft_apply_montage of ft_megplanar causes ft_topoplotTFR problems after ft_rejectcomponent
• 719 - MEGrealign misplaces sensor
• 723 - make ft_connectivityanalysis more robust to deal npsf
• 724 - ft_connectivityplot should take multiple inputs and plot them in 1 figure
• 725 - ft_connectivityplot should work in linearly indexed data
• 726 - issue with addressing default for smoothing in ft_volumesegment
• 728 - change to ft_channelselection in SVN commit 3548 breaks some wildcard functionality
• 729 - ft_checkdata -> fixcsd with 'sparse' -> 'full' flips the directionality with respect to convention
• 730 - ft_singleplotER crashes when called from ft_multiplotER with cfg.matrixside = 'feedforward'
• 732 - csd2transfer crashes on initialising some matrix when sfmethod = 'bivariate' and csd is not positive definite
• 734 - ft_sourceanalysis: method ='sam', does not work
• 735 - rename cfg.option cohrefchannel into refchannel
• 736 - rename the values in cfg.matrixside (plotting functions)
• 739 - ismember is slow and should be replaced (if possible) by any(strcmp(...))
• 740 - representation of pdc and dtf with dimord 'chan_chan' should be consistent with granger
• 741 - cfg.statistic not in statistics_crossvalidate
• 742 - incorrect handling of defaults in ft_freqanalysis
• 744 - cfg.latency should be made forbidden/deprecated in ft_timelockanalysis
• 745 - similar to cfg.trials and cfg.channel, functions should get an option cfg.latency
• 747 - cfg.design and design are both possible inputs in stat* functions
• 750 - ft_selectdata should support toilim for raw data.
• 753 - ft_prepare_sourcemodel changes
• 754 - trialfun_general in line 126 behaves strange ...
• 755 - rename coordinates in ft_volumewrite by coordsys
• 757 - ft_volumesegment smoothes anatomy when creating a scalp mask
• 758 - confusing comment in ft_volumewrite
• 761 - test the ft_databrowser_new implementation
• 762 - ft_connectivityplot should support multiple input data with different functional parameters
• 763 - low level helper functions for csd2transfer are missing in repository
• 764 - ft_multiplot_CC shouldn't have a default layout
• 767 - get uniform definition of segmented compartments
• 769 - improve answer to faq
• 770 - allow ft_volumerealign to work with arrow-keys
• 775 - unclear documentation of ft_dipolesimulation.m
• 782 - Bug in ft_connectivityanalysis
• 783 - montecarlo p value should never be zero
• 785 - ft_volumesegment is giving me an error message
• 786 - ft_componentanalysis fails to output correct mixing matrix when using dss
• 788 - recompile src/ft_getopt.c on linux 32+64 and windows 32+64
• 791 - funcolorlim not correctly assigned with default in ft_sourceplot
• 792 - ft_preproc_polyremoval gives round off problems
• 795 - ft_databrowser (and _new) fail when no cfg is present in data
• 798 - ft_freqstatistics fails on old input data (reported by Yoni)
• 799 - Bug with specifying channel combinations for Granger causality
• 800 - Create and optimize templates for neighbourselection
• 802 - instantaneous causality is broken
• 803 - nan support in ft_connectivity_corr breaks functionality
• 807 - fiducial positions in ctf share are inconsistent with the shape itself
• 808 - ft_transform_geometry does not apply the transformation to an anatomical MRI
• 809 - Suggestion: Let neighbourselection calculate distances for neighbours
• 811 - implement spm2ft converter function
• 812 - ft_defaults sometimes takes very long to execute
• 813 - routlm, an accessory routine to project electrodes, is not available out of the src folder
• 818 - If no layout is given, it could be estimated using ft_senstype(data)
• 819 - ft_getopt.mexw64 depends on MSVC 2010 dll
• 822 - ft_connectivityanalysis seems to fail on powandcsd in input (ft_selectdata issue, I suspect upon averaging/channel subselection)
• 823 - ft_connectivityanalysis / ft_freqdescriptives don't seem to do jackknife anymore
• 824 - add 4D-gradiometer dataset to the test datasets
• 825 - mutexlock in combination with outputfile fails in ft_freqanalysis when ft_checkconfig is strictly removing unused cfg options
• 830 - ft_databrowser vertical rescaling does not work
• 834 - ft_checkdata with cmbrepresentation fullfast should lose cumtapcnt and cumsumcnt
• 836 - ft_componentanalysis crashes with method='fastica' and MEG data in input
• 838 - ft_selectdata crashes when avgoverfreq on single freq data
• 841 - use consistent british or american english throughout
• 844 - if cfg.montage is specified in ft_preprocessing, it is only applied to the data
• 845 - ft_appenddata incorrectly initializes the output sampleinfo always to be empty
• 846 - could we make ft_freqgrandaverage to support 'chan' dimord?
• 847 - cfg.design not in help comments of ft_freqstatistics
• 848 - identify channel function is broken in ft_databrowser
• 849 - convention of 'directionality' in spectral transfer function is swapped wrt the other connectivity metrics
• 850 - ft_checkdata gets confused with mtmconvol input and fourier
• 851 - freqstatistics has a problem with singular dimensions in freq field?
• 852 - freqstatistics has a problem reshaping my data?
• 853 - artifact marking does not work in ft_databrowser butterfly viewmode
• 854 - ft_databrowser does not respond to numpad keys
• 855 - ft_artifact_zvalue should support in-memory data with no cfg.trl specified
• 856 - allow user to specify critical time window for ft_reject_artifact
• 857 - ft_databrowser crashes
• 858 - Problem with megplanar on CTF 275
• 859 - .lay for BrainCap 64ch MR-compatible EEG cap not in templates
• 860 - ft_neighbourplot crashes
• 861 - ft_volumesegment with cfg.write = 'yes' writes the wrong transformation matrix to the files
• 862 - fixsampleinfo does not recreate sampleinfo if trialdefinition is inconsistent
• 863 - megplanar followed immediately by combineplanar does not work
• 864 - megplanar computes a value for all sensor in the neighbourhood structure, independent of whether they are actually in the data
• 866 - ft_neighbourselection outputs non-optimal neighbour structure
• 867 - compiled ft_getopt fails on mentat 274
• 868 - ft_neighbourselection miss sensors after ft_rejectcomponent
• 869 - compiled nanXXX fail when using a low matlab version
• 872 - implement and test statfun_glm
• 878 - give Elli svn access
• 879 - add channel position to the grad structure
• 882 - facilitate the editing and updating of SVG figures on the wiki
• 885 - compiled ft_getopt fails when the input is a config object
• 888 - ft_freqstatistics requires cfg.neighborhood when dimord = 'freq_time'
• 889 - delete the mex-files for keyval
• 891 - ensure that the test-directory in /home/common/matlab/fieldtrip/forward/ exists
• 892 - ft_freqstatistics should give meaningful error in case default cfg.parameter is not available
• 893 - freqstatistics fails for fourier input data with a rpttap in the dimord
• 894 - statfun_indepsamplesZcoh requires an undocumented cfg.label
• 895 - the output dimord of ft_freqstatistics should be chancmb in case of a bivariate statistic (e.g. coherence)
• 897 - rename tests directory into "test"
• 898 - ft_databrowser does not draw layout correctly when layout is taken from .mat-file
• 899 - senstype does not recognize eeg datastructure
• 900 - ft_determine_coordsys gives an error when mri.coordsys = 'spm'
• 903 - cfg.numcomponent fails most methods in ft_componentanalysis
• 904 - cfg.numcomponent fails for method=dss in ft_componentanalysis
• 907 - test_ft_preprocessing fails to return identical results for .edf and .bdf
• 908 - /home/common/matlab/fieldtrip/data/test/raw/lfp/preproc_neuralynx does not exist
• 909 - test_ft_preprocessing fails on plexon data
• 910 - test_ft_preprocessing fails on 'tdt data
• 911 - add memtic/memtoc to all fieldtrip functions
• 912 - move clever handling of names of balancing structures to ft_apply_montage
• 913 - ft_connectivityanalysis gives inaccurate user feedback when doing npsf with cfg.channelcmbs
• 914 - qsubcellfun should use proper working directory and meaningful job IDs
• 917 - inconsistent and missing versions for ft_getopt mex files
• 918 - compatibility issue with matlab2011a
• 921 - selecting freq parameter fails in ft_selectdata
• 924 - ft_denoise_synthetic does not have ft_checkconfig with trackconfig=on
• 926 - ft_xxxplot functions should be made more consistent with their return value
• 928 - ft_spiketriggeredinterpolation assigns cfg.callinfo at the end, but the variables are not set at the beginning
• 929 - xxx2fieldtrip function user interface should be made more consistent
• 930 - test_ft_preprocessing fails for yokogawa160
• 931 - ft_appendfreq fails when the data does not exactly overlap
• 932 - ft_freqstatistics fails on old input data (again)
• 937 - ft_prepare_mesh inconsistencies and restructure suggestion
• 942 - ensure consistent structure of the main ft_functions
• 943 - improve user-interface to ft_artifact_zvalue
• 944 - deprecate some old artifact functions
• 945 - non-parametric spectral factorization can be sped up substantially
• 946 - ft_appenddata reportedly fails to concatenate trialinfo and sampleinfo (even when that is possible)
• 947 - ft_neighbourselection help suggests you can use any cfg.layout
• 948 - test_ft_megplanar does not work
• 949 - ft_megplanar fails for method sourceproject
• 950 - ft_megrealign does not properly take balancing into account
• 960 - rename statistics_montecarlo and such into ft_statistics_montecarlo
• 961 - new config option confusion in ft_artifact_ecg
• 962 - remove default cfg.demean = 'yes' in ft_componentanalysis
• 963 - neuromag data units should be reflected in the grad structure and ft_convert_units
• 964 - prepare_mesh_segmentation and cfg.tissue
• 965 - ft_hastoolbox is used for compat, but it does not detect compat correctly
• 967 - move functionality of instantaneous causality and total interdependence into ft_connectivity_granger
• 968 - loadvar inconsistently throws errors, which are resolved if called again
• 969 - ft_volumerealign interactive gui doesn't show "R" & "L" indicators
• 970 - the option cfg.fixedori does not work for the beamformer_pcc
• 971 - ft_sourcedescriptives does not understand the option 'method' anymore
• 973 - check and correct the incongruencies between units names
• 974 - add qstat and qdel to qsubcellfun documentation
• 976 - round-off issues lead to unexpected behavior of ft_specest_XXX
• 981 - ft_headmodelplot doesn't work with a multisphere volume conduction model in the input
• 982 - headsurface and head_surf seem to have largely overlapping functionality
• 983 - Change ft_neighbourselection to ft_prepare_neighbours
• 986 - write a wrapper for simbio binaries
• 987 - make ft_selectdata test script
• 988 - ft_topoplotER needs a .freq field to function
• 989 - there seems to be a problem in selectdata in that the underlying dimlength does not recognize a .stat field.
• 990 - Incompatibility of new function ft_prepare_neighbours?
• 997 - Temporary fix in prepare_mesh_segmentation ruins the triangulation
• 998 - Convert FT tutorials into testing functions
• 999 - sourceinterpolates sets default projectmethod to 'linear' while such a method does not exist
• 1000 - create doodle for social event
• 1001 - ft_plot_headshape redundant?
• 1002 - ft_prepare_headmodel has repeating code
• 1003 - feature: use ft_headmodelplot without grad/elec
• 1005 - parameter in sourceinterpolate is a string by default whereas the function expects a cell-array
• 1006 - sourceanalysis breaks on checkconfig?
• 1007 - no elec.pnt in the new version (03/10/2011) of channelposition.m
• 1008 - change cfg.frequency to cfg.foi in ft_sourceanalysis
• 1010 - layout of subplots in ft_topoplotER
• 1011 - ft_appenddata using the 'new' source representation?
• 1013 - hassampleinfo fails on a timelocked structure with trials
• 1014 - appendtimelock fails if the input contains avg and trial
• 1015 - ft_rejectvisual zvalue button seems not to display a z-value
• 1016 - ft_read_mri fails to return a correct volume structure when not using spm for reading analyze files
• 1017 - ft_volumerealign breaks when you click outside of a plot
• 1018 - ft_artifact_zvalue/clip require a cfg.trl and don't use data.sampleinfo
• 1021 - sort out all the appenddata/time/freq/source and ft_selectdata bugs
• 1022 - test_bug228 need to be finalized or deleted
• 1026 - ft_checkconfig>checksizefun error.
• 1030 - fixsens should not be made conditional on the sens definition
• 1033 - implement a consistent way to return help (or an error)
• 1034 - private/spikesort has a non-standard way of debugging
• 1039 - re-rename ft_rejectconfound to ft_regresscounfound
• 1041 - ft_freqdescriptives needs NaN amount of RAM
• 1045 - add ft_checkconfig option: forbiddenval or unusedval
• 1046 - add explicit check for cfg.correctail = 'yes' in statistics_montecarlo
• 1048 - ft_sourcedescriptives handles cfg.inputfile wrongly
• 1050 - fixsens should be replaced by ft_datatype_sens
• 1051 - fixsens breaks on data that has coilpos & coilori but NO coilpos
• 1052 - fixsens breaks on EEG data
• 1053 - fixsens breaks on EEG data
• 1054 - channelposition crashes for sens from layout neuromag306all.lay because of missing.tra
• 1055 - ensure that ft_neighbourplot internally uses the new-style elec/grad and not the old one
• 1058 - ft_prepare_neighbours misses header script
• 1061 - ft_topoplotER calls itself recursively instead of topoplotTFR
• 1062 - ft_chantype does not recognize neuromag 306 system
• 1063 - ft_connectivityanalysis does not remove the autocombinations properly anymore when computing bivariate granger
• 1067 - sourcedescriptives should support cfg.trials if possible or warn the user
• 1071 - suggestion: sourcegrandaverage could support a cfg.roi for subselecting a brainregion of interest
• 1074 - for discussion in the FT meeting
• 1078 - all functions that use cfg.elec, cfg.elecfile or get it out out of the data should be consistent
• 1080 - fixneighbours should be solved only once - in ft_checkconfig
• 1083 - remove nested functions and use normal functions instead
• 1087 - replace simplefft in databrowser by a call to a browsefun
• 1088 - ft_volumelookup behaves inconsistently w.r.t. the handling of the cfg options
• 1091 - the alldist variable in ft_prepare_neighbours/compneighbstructfromtri seems to be unused
• 1092 - discuss in the FT meeting how to do cfg tracking for definetrial and artifact_xxx
• 1095 - negative trialpadding in ft_artifact_zvalue
• 1097 - discuss the remove flag in ft_redefinetrial, possibly reimplement
• 1098 - the ft_qualitycheck reference documentation needs to be improved
• 1099 - fixdipole should be done in ft_checkconfig instead of main FT functions
• 1100 - the varargin and varargout of ft_denoise_pca should be properly documented
• 1101 - for discussion in the FT meeting
• 1102 - clarify output structure of ft_connectivityanalysis
• 1103 - 'linear' option missing in interp_ungridded
• 1105 - add ft_preamble and ft_postamble to ft_neighbourplot
• 1106 - add ft_preamble and ft_postamble to ft_conjunctionanalysis
• 1110 - ft_postamble attempts to address 'cfg' in fieldtrip2spss while this variable is never put in or created
• 1111 - ft_freqgrandaverage doesn't output a dimord
• 1112 - ft_convert_sens fails to estimate the size of a ctf151 due to the new chanpos
• 1113 - remove all old Log messages by the SVN Id
• 1114 - make a dependency table for compat and ensure that all dependencies are appropriate
• 1116 - ft_prepare_headmodel incorrect handling of defaults
• 1122 - to discuss: would it make sense to provide a set of template 3D grids in the fieldtrip release?
• 1123 - ft_checkconfig removes some relevant fields from the cfg in ft_volumenormalise
• 1125 - remove DC offset prior to time-domain filtering in ft_preproc_*filter
• 1126 - change handling of the mixing and unmixing matrix in ft_componentanalysis
• 1127 - implement variable loading consistently
• 1128 - collapse multiple calls of ft_checkconfig into one
• 1129 - implement firls filter and change default order of fir1 to 200
• 1130 - ft_sourceanalysis: cfg defaults settings inconsisent with new method-dependant cfg settings
• 1131 - Should ft_checkconfig also deal with fixdipole?
• 1132 - check that ft_datatype_sens is consistently used and replaced by ft_checkdata/-config where possible
• 1133 - neighbourplot does not plot neuromag306 layout&neighbours correctly
• 1135 - Remove neighbourtemplates for MEG systems that are based on 2D layouts?
• 1136 - ft_checkconfig could support 'custom' error messages
• 1137 - cellfun problem in sourcedescriptives
• 1140 - update ft_connectivityanalysis
• 1141 - extend the ft_analysisprotocol function with reports on the callinfo
• 1142 - the cfg history is not fully kept in e.g. the artifact handling
• 1146 - ft_selectdata with no selected trials
• 1147 - some surface functions need to be merged
• 1148 - meshes need to conform to a standardized matlab structure
• 1150 - sourcestatistics fails to organise the input data in pos*rpt matrix
• 1153 - cfg is lost from the output structure after calling ft_redefinetrial
• 1155 - cfg.sphereradius in ft_sourceinterpolate: undocumented but neccecary cfg field?
• 1158 - Wrong channeighbstructmat in newer ft versions
• 1160 - the selfun does not get executed properly in ft_databrowser
• 1161 - we need a drop-in replacement for the randperm function
• 1162 - Previous structure not saved
• 1163 - ft_timelockbaseline error when dimord 'subj_chan_time'
• 1165 - ft_electroderealign internally still uses old sens structure
• 1167 - ft_appenddata does not work properly for freq data (when the first frequency bin contains nans?)
• 1168 - ft_multiplotTFR dimensions not flexible
• 1171 - Update documentation of mexfiles, and check for corresponding .m scripts (autocompilation, error msg and help).
• 1174 - fileparts() : 4th argument and Matlab R2011b
• 1175 - trialinfo mistakenly removed in ft_rejectcomponent
• 1176 - assumed number of components/channels should not be hard-coded 10
• 1178 - ft_channelcombination fails with 3rd input argument
• 1179 - ft_rejectvisual crashes when ft_checkconfig is set to pedantic and preproc options are specified as fields of cfg
• 1180 - nanmean does not behave like mean
• 1183 - boolean cfg options should need consistent values to be true or false
• 1184 - ft_timelockgrandaverage cannot handle variables that lack an 'avg' field
• 1191 - allow users to disable mem and time usage messages.
• 1200 - matlab crashing when starting to use FieldTrip
• 1201 - cluster randomization broken when 'freq_time', or 'chan_freq_time' with nchan = 1
• 1203 - implement a ft_networkanalysis function
• 1205 - implement cfg.seed input to ft_componentanalysis
• 1210 - inconsistent number of grad.pnt and grad.labels
• 1211 - ft_chantype should be made faster
• 1214 - host name should be recorded in cfg.callinfo.hostname
• 1219 - the test data on /home/common/ for neuromag306 (raw) contains mostly 0's
• 1220 - the preprocessed test data for neuromag122 still contains 306 channel data
• 1221 - ft_prepare_atlas has an inconsistent input
• 1222 - there are two copies of ft_prepare_bemmodel
• 1224 - Time for Bowling!
• 1226 - nanstd: segmentation fault on single precision
• 1230 - suggestion for enhancement of ft_rejectvisual
• 1231 - what's the intended output of ft_getopt({'rpt' []}, 'rpt', 'all')?
• 1232 - ft_selectdata cannot select trials from a source structure
• 1235 - ft_selectdata (ft_selectdata_new) should retain sampleinfo when possible
• 1236 - ft_getopt is not properly implemented in sourceanalysis
• 1237 - ft_getopt fails on windows 64-bit systems
• 1238 - compile ft_getopt.c for Linux 32-bit, Mac 32/64 bit
• 1242 - databrowser time axis is incorrect for timelock input data
• 1244 - ft_analysisprotocol shows the wrong cfg if you click in the figure
• 1245 - sens2lay (subfunction to ft_prepare_layout) does not always take a user specified subselection of channels into account
• 1248 - standard FIR filter order throws a warning
• 1249 - inconsistent grad-structure in output after ft_componentanalysis and ft_rejectcomponent
• 1250 - ft_preamble_distribute fails with varargin and varargout and with empty inputs
• 1253 - fieldtrip-bugs should be exempted from most bugzilla emails
• 1257 - ft_analysisprotocol should properly support multiple different branching scenarios
• 1258 - solid_angle (and potentially other mex-files) have ill-defined dependencies, especially on Windows
• 1265 - error while running "ft_megrealign"
• 1267 - error while running "ft_timelockstatistics"
• 1268 - statfun_indepsamplesZcoh needs cfg.label or cfg.pos in input, but they are not used
• 1270 - mask option ft_singleplotER
• 1271 - is the /home/common/matlab/fieldtrip_private symlink still needed?
• 1274 - complete the CSP implementation in ft_componentanalysis
• 1276 - makeselection subfunction in ft_selectdata_new should support vectorial seldim
• 1277 - prewhitening functionality in ft_sourceanalysis misses low-level function
• 1279 - ft_artifact_zvalue crashes in interactive mod
• 1282 - alleged bug in ft_topoplotCC
• 1283 - trunk\src\reset mex file overwrites built-in function
• 1284 - ft_electroderealign has a syntax error
• 1285 - make ft_fetch_vol similar to ft_fetch_sens
• 1286 - test data for datatype_sens is not present
• 1287 - ft_megplanar has qualitatively different results than some months ago
• 1288 - ft_senstype does not recognize combined planar data correctly
• 1291 - consider to use addpref/getpref instead of the global ft_default
• 1294 - ft_redefinetrial.m rare channel label output
• 1295 - ensure consistent handling of the handedness of the volumetric data with respect to the real-world coordinate system
• 1297 - error at ft_volumesegment
• 1298 - trials not kept after ft_sourceanalysis with cfg.keeptrials='yes'
• 1300 - test_ft_timelockanalysis fails on k=18
• 1301 - Organize bugs to work on during bug-binge 20120201
• 1302 - extend the regression testing framework with old versions
• 1303 - test_datasets path changed
• 1304 - revamp the handling of artifacts
• 1306 - ctf64 data: ft_datatype_sens(data.grad) fails after call to ft_selectdata
• 1307 - producing a layout from a bti248 grad structure results in a faulty layout
• 1309 - Cannot determine geometrical units of volume conduction model
• 1310 - Missing resolution Information in *vhdr causes ft_preprocessing to return only NaNs
• 1312 - ft_datatype_sens is sometimes used where sens can be empty
• 1313 - chantype/chanunit -> should we consider to represent them at the level of the grad, rather than in the header?
• 1315 - *something* in convert2raw or raw2timelock or timelock2raw ruins time-axis
• 1316 - use spm_bwlabel also for 2D data
• 1320 - make test scripts for the pieces of code where spm8 calls ft functions
• 1321 - projectmom in ft_sourcedescriptives suboptimal for time domain methods?
• 1323 - should LF column normalisation occur before or after dipole orientation selection?
• 1324 - read_trigger and read_ctf_trigger produce different output
• 1325 - positive z-axis points downwards after ft_volumerealign
• 1326 - preproc loop can be removed in rejectvisual_XXX and ft_timelockanalysis when cfg.preproc is empty
• 1330 - y-axis of z-scored rejectvisual plots says /muV or Tesla instead of z-score
• 1332 - No data shown with ft_topoplotER after ft_freqanalysis (tfr, keep trials)
• 1333 - Scaling using cfg.chanscale crashes ft_databrowser if more than one channel selected
• 1335 - dataplots should scale component topos according to the individual topos minmax
• 1341 - trialfun_general an be made more robust
• 1342 - ft_denoise_pca bug?
• 1343 - Problem in ft_denoise_pca when the 'pertrial' option is set to 'yes'
• 1344 - Problem in ft_denoise_pca, returned 'time' field might be wrong
• 1347 - readCTFds cannot read BCIT MEG files
• 1348 - ft_read_header error while reading .cnt file in version 20120222
• 1349 - jan-mathijs is missing
• 1351 - checksize in checkconfig takes ages on a grandaverage
• 1358 - functional sourcedata needs to be interpolated before plotting...
• 1359 - detecting the wrong acquisition rate
• 1363 - subplots sometimes not plot in ft_artifact_zvalue
• 1365 - extend the "spm double installation" path check to other toolboxes
• 1367 - slow speed of niftii file creation using sourceinterpolate.m for 4D datasets
• 1369 - incorrect call of preproc inside ft_artifact_threshold
• 1370 - Buffer crashes or does not keep up with the load from time to time
• 1372 - give warning if user might have used addpath(genpath(FT))
• 1373 - Search for old-style cfg renaming
• 1374 - check for consistent use of preamble loadvar and subsequent cfg.inputfile and cfg.outputfile
• 1376 - cfg options should obey to (updated) code guidelines
• 1378 - ft_getopt.mexglx looks for libstdc++.so.5
• 1379 - non-desired behaviour for lcmv with trial and filter input to ft_sourceanalysis
• 1380 - ft_checkdata fails with 'source' data with .pos field
• 1381 - BUG with a *.mexw64 file
• 1383 - ft_databrowser outputs 'continuous' artifacts definitions instead of trial-based when data is trial-based
• 1384 - mex files for windows 32 should be compiled according to the guidelines
• 1385 - mex files for windows 64 should be compiled according to the guidelines
• 1387 - fr_sourcedescriptives does not support keepmom and keepnoise*
• 1388 - ftp-server fieldtrips don't seem to be updated
• 1390 - data has variable trial lengths, you specified not to accept that
• 1391 - preproc converts time axis to fsample and offset and then recreates the time axis
• 1392 - ft_prepare_leadfield calls 'unknown' ft_preamble
• 1396 - One of the test scripts crashes matlab
• 1398 - FT nansum do not work on a vector of booleans
• 1399 - channel selection mismatches displayed name in ft_reject_visual in summary mode
• 1405 - ft_senstype does not work with volume data
• 1406 - ft_progress could print the progress in place, rather than use newlines
• 1409 - ft_selectdata_new removes dimord field
• 1410 - bugs cannot go from REOPENED to ASSIGNED anymore
• 1411 - Error in ft_volumenormalise : 'spm_vol_minc' function missing
• 1414 - fix the test scripts
• 1415 - fix the following the test-functions
• 1416 - unexpected behavior of ft_setopt
• 1417 - fix testing scripts
• 1418 - ft_selectdata_old fails on output of ft_connectivityanalysis when called as: selectdata(data,'channel',chansel)
• 1419 - ctf64 data cannot be detected as MEG data
• 1420 - test_ft_freqanalysis because stored data differs from newly compute data
• 1422 - ft_sourceinterpolate returns the incorrect inside field when interpolating from 2D to 3D
• 1423 - ft_sourcestatistics does not support latency and foilim selection (in old implementation)
• 1424 - ft_databrowser: cfg.compscale default confusing
• 1425 - coherence calculation with rpttap dimension size 1
• 1429 - ft_componentanalysis returns slightly different results from the stored test results
• 1430 - ft_componentanalysis applies a scaling factor of 1/x even if x = 0
• 1431 - ft_selectdata_old unexpected toilim behavior
• 1432 - ft_prepare_singleshell and ft_prepare_headmodel give different results
• 1433 - test_ft_datatype_sens fails
• 1434 - statfun_XXX should be ft_prefixed(?)
• 1435 - trialfun_XXX should be ft_prefixed(?)
• 1436 - make sure ft_prepare_layout loads .mat if .lay does not exist
• 1437 - Check and add the Quickcap64 layout from Julian Keil (see mailinglist)
• 1440 - fixname doesn't parse filename correctly leading to error in warning once
• 1441 - openmeeg test scripts are not executed
• 1442 - add cfg.channel in ft_prepare_neighbours, and add warning when no neighbour is found
• 1443 - ICA component rejection followed by leadfield computation
• 1446 - ft_selectdata_old does not yet handle mixed channel labels over input data stucture
• 1449 - implement an ft_version function
• 1450 - subfields in ft_default are not added to input cfg by ft_checkconfig
• 1451 - clusterstat (sourcestatistics) crashes on use of spm_bwlabel
• 1452 - all functions should explicitly create a new output-structure
• 1456 - ft_multiplotTFR y default no longer does NaN-masking, and created a black patch behind all plots
• 1458 - ft_chantype does not recognize a grad structure correctly
• 1460 - clusterbasedpermutation freq plots nans (i.e. nothing)
• 1461 - clarity in ft_freqanalysis for fboi(lim) calculation
• 1462 - speed up ft_prepare_neighbours
• 1464 - "dimord" field
• 1465 - acticap 3d electrode positions needed
• 1469 - inputfile in ft_preprocessing
• 1470 - ft_megplanar outputs NaNs when using input data containing backprojected components.
• 1471 - providing dataset without full path can lead to unexpected behaviour -> propose warning in ft_filetype
• 1474 - rejectvisual summary fails on single-channel data
• 1477 - raw2timelock within utilities/ft_checkdata.m fails if trials do not cross timepoint 0
• 1478 - fast vs very-slow processing in ft_freqanalysis on similar data.
• 1480 - struct() crashes on config-object when this object contains a struct array with one of the fields being itself a struct
• 1481 - .balance not exist in senstype elec
• 1483 - dimord 'rpt' not yet allowed in ft_selectdata_new
• 1484 - ft_freqbaseline uses cfg.param instead of cfg.parameter (which would be consistent with other functions)
• 1485 - Illogical ~Jan-Mathijssing in megplanar
• 1486 - improve artifact detection and rejection for unstable acquisition systems
• 1487 - the email lists have changed from @donders to @science
• 1493 - function names are conflicting with other toolboxes
• 1495 - ft_appendtimelock along channel dimension
• 1500 - find a date for a day out with the fieldtrip team
• 1502 - forbid fields in cfg that are not used
• 1504 - ft_timelockanalysis error when averaging response-locked data
• 1506 - test bug to check that the fieldtrip-bus list still works
• 1508 - ft_freqanalysis does not produce proper error when cfg.channel consists of names not present in the data
• 1513 - grid and vol different units (neuromag data)
• 1520 - ft_checkdata is very slow on component data
• 1522 - ft_databrowser fails with cfg.viewmode='component' because grad structure has been changed
• 1526 - make a list of FT functions that (can) deal with component data
• 1531 - triang didn't work for mtmconvol because of extra [] input argument
• 1533 - nrpt size does not match varout size in ft_connectivityanalysis after keepchn selection
• 1535 - Nanvar gives inaccurate results
• 1536 - ft_getopt fails on windows 64 bit
• 1541 - neighbourselection is slow when providing data as input
• 1545 - Fp1 and Fp2 have small p s in layout biosemi64.lay
• 1546 - calling resampledesign with a control variable can yield incoherent results
• 1547 - rename cfg.vol into cfg.headmodel and cfg.grid into cfg.sourcemodel
• 1551 - 'spline' method fails in ft_channelrepair
• 1552 - implement ft_math_xxx functions
• 1554 - ft_sourceinterpolate does not work for grand average data
• 1555 - multiple warnings of adding FieldTrip
• 1556 - bug in paired ANOVA
• 1557 - add trentool to fieldtrip/contrib
• 1558 - trialinfo lost after artifact rejection
• 1562 - add check in ft_channelrepair to verify spherical coordinates / fit to sphere for SSI
• 1563 - ft_sourceinterpolate using 'spline' interpolation crashes on win64/Matlab 2010b
• 1564 - Creation of trialinfo field using ft_redefinetrial
• 1565 - re-implement the analysisprotocol function to allow exporting the pipeline/workflow to file
• 1571 - dftfilter does not work when not segmenting trials?
• 1574 - baseline/normalization with grand averaging
• 1576 - actvsblT cannot handle source data (yet)
• 1577 - ft_volumelookup adds fields which are forbidden
• 1578 - ft_volumelookup adds empty cfg structures, but checks with isfield rather than isempty
• 1579 - CalcMD5 mex file is missing for most platforms
• 1583 - ft_prepare_sourcemodel should use ft_fetch_sens and ft_fetch_vol
• 1585 - cell cfg.statistic field with multiple strings crashes ft_freqstatistics
• 1586 - tex formatting fails in ft_analysisprotocol
• 1588 - ft_fetch_sens should fetch units
• 1589 - LCMV with keepmom = 'no' crashes, when using a precomputed filter
• 1592 - allow for a dimord that is different from the standard ones
• 1593 - number of channels can be mismatched with neighbours in ft_statistics_montecarlo with clusters
• 1594 - consider whether spm_bwlabel should also be in default fieldtrip
• 1596 - ft_selectdata_old with toilim not work on timelock data .avg and .cov correcltly
• 1597 - ft_selectdata_new not work with toilim
• 1598 - LCMV should warn/error if hascovariance=false
• 1599 - fixedori has no influence when using LCMV
• 1600 - .inside not updated in ft_checkdata(data,'datatype','source')
• 1602 - ft_selectdata_new has a few simple bugs that crash on freq data
• 1611 - in ft_electroderealign, template not checked correctly?
• 1612 - ft_electroderealign() cannot correctly align electrodes to head shape if the head is not in CTF orientation
• 1614 - ft_default.trackconfig = 'report' results in obscure low-lvl cfg-object error when plotting interactively in ft_multiplotTFR
• 1616 - Add dimord for every numerical field in datastructures
• 1619 - ft_prepare_sourcemodel crash
• 1622 - ft_fetch_data always gives error when trials overlap in data
• 1630 - applying average mastoid reference derivation to EEG data
• 1637 - planar gradient computation is wrong
• 1643 - ft_redefinetrial produces error message when cutting data into snippets
• 1645 - implement http download of code and data as alternative to ftp
• 1649 - cfg option Ftest starts with an upper-case character, should be lower-case
• 1656 - input variable name should be consistent with the data type
• 1657 - bug in memorizing the birthday of one of the most valued core members
• 1658 - ft_sourcedescriptives should have the option cfg.trials
• 1660 - ft_fetch_data: says it fills with NaNs when data not present, but doesn't
• 1663 - ft_statfun_roc not called properly from ft_getuserfun
• 1665 - align_ctf2spm.m fails on regular donders MRI data
• 1666 - convert the example scripts into test scripts
• 1668 - deprecating intermediate level of preprocessing
• 1673 - test_ft_plot_slice fails
• 1674 - test_ft_plot_vector fails
• 1675 - Check mail reporting of regression test results
• 1677 - problem with using a trial selection to do freqdescriptives on a subset of trials
• 1683 - order of given parameters affect output of ft_freqgrandaverage
• 1685 - 'sampleinfo' non-existent error when selecting a time window with ft_selectdata
• 1686 - improve debugging of end-users problems using logging options
• 1688 - there is a file called "testname" in the ftp zip file release
• 1691 - ft_multiplotER interactive callback ignores common masked region
• 1692 - multiplotER does not support maxabs
• 1693 - ft_freqanalysis should support variable number of tapers over frequencies for method = mtmfft, taper = dpss
• 1694 - ft_scalpcurrentdensity does not has new style of progress bar yet
• 1695 - events are not shown in ft_databrowser
• 1697 - build in support for SPM12
• 1699 - ft_artifact_xxx calling ft_artifact_zvalue are deprecated
• 1701 - ft_senstype fails to detect CTF275 when it is called on a subset of channels
• 1703 - add elan2fieldtrip and fieldtrip2elan to exchange data back and forth
• 1704 - Crash when preparing layout for Neuromag
• 1707 - channel order shouldn't matter for the output of an ft_function
• 1709 - ft_prepare_headmodel (singleshell) can be made more robust
• 1711 - implement cfg.verbose option, together with ft_default.verbose
• 1715 - Transpose operation missing in ft_channelcombination.m
• 1716 - ft_artifact_zvalue x-axis can show time rather than samples
• 1717 - Update fieldtrip-bugs
• 1721 - create and add template grads
• 1722 - why is cfg.warp only used if cfg.method=template, in ft_electroderealign?
• 1727 - ft_volumereslice chunks off top of the brain
• 1731 - implement tighter provenance using md5 hashes on input and output
• 1734 - redefining indentical trials resulting in different number of samples
• 1735 - ft_appenddata doesn't append data correctly --> ft_databrowser and ft_fetch_data failure
• 1736 - implement a function in fieldtrip/private as replacement for imfill holes
• 1737 - warning_once does not support the syntax warning(id, msg)
• 1738 - make the binary masks in ft_volumesegment consistent
• 1743 - pos2dim3d disappeared?
• 1744 - test_ft_conjunctionanalysis fails
• 1746 - grid.leadfield (and filter) should be accompanied by a label field
• 1749 - problem with ft_artifacft_zvalue
• 1750 - use consistent option names for segmentationstyle, inside and cmbrepresentation
• 1753 - allow multiple nested memtic/memtoc calls
• 1754 - new compiled nanXXX functions don't work
• 1755 - ft_datatype_segmentation uses determine_segmentationstyle
• 1758 - ft_freqanalysis does not work on spike structure
• 1759 - ft_apply_montage: sparse matrix multiplication leads to different results than full matrix multiplication
• 1761 - nanstd breaks ft_statfun_indepsamplesT because it expects less input arguments (than std)
• 1762 - config object fails on struct-array
• 1764 - speed up volumethreshold (used in ft_datatype_segmentation)
• 1765 - standard_grid3d10mm does not fit well after non-linear warp
• 1768 - win32bit: nan* mex files missing
• 1771 - test_tutorial_clusterpermutationfreq only passes on odd revisions... a.k.a. 'the pulsar'
• 1774 - bug binge on 10 October 2012
• 1775 - implement ft_sourceparcellate function
• 1776 - ft_channelselection: should this produce an error when no channels are selected?
• 1778 - processed data on ftp differs slightly from newly processed data
• 1781 - ft_version breaks
• 1786 - sphericalSplineInterpolate - does not converge
• 1788 - ft_electroderealign doesn't work with option cfg.elec
• 1789 - ft_databrowser: when cfg has trl in ft_databrowser(cfg) no trial segmentation is done
• 1790 - ft_version() returns FT_ROOT/utilities in ftpath
• 1791 - implement a function for TMS artifact removal
• 1796 - prepare_headmodel checks for vol.unit, but old headmodels do not have a .unit field
• 1797 - ft_artifact_zvalue (and ft_artifact_xxx) fail
• 1798 - changes in ft_votype or ft_datatype_headmodel lead to crash or halt
• 1801 - consider using sens.type for grad and elec
• 1804 - check whether ft_defaults respects existing path-order
• 1806 - grad.type has to be updated following ft_megplanar
• 1807 - bti248 gradiometer system is not explicitly defined
• 1809 - annoying warning when calling nanvar with w=[]
• 1810 - test_ft_timelockanalysis fails
• 1811 - printstruct.m utility does not support function_handle variable
• 1813 - ft_fetch_header: requires grad field in header
• 1824 - update the external_simbio group on SVN
• 1827 - ft_hastoolbox: 'BCT' case occurs twice in the switch-statement
• 1828 - ft_convert_coordsys fails with particular input MRI dimensionality
• 1830 - merge the functionality of ft_sensorrealign, ft_electroderealign and ft_interactiverealign in one or two functions
• 1831 - consider adding a vectorized version for ptriproj
• 1841 - get hands-on experience with branching and merging with SVN and/or GIT
• 1842 - use nan(x,y,z) when appropriate?
• 1845 - ft_preproc_padding: 'padtype' variable not initialized
• 1847 - clusterstat gives error for one sided test (cfg.tail = -1) using nonparametric clusterthreshold
• 1848 - fix some small topics that have been requested for spm12
• 1850 - ft_channelrepair usind 'spline' method fails for CTF MEG data
• 1853 - coherence data cannot be topoplotted by default
• 1854 - spm fieldtrip integration fails
• 1855 - enfore equality between number of channels and size(tra,1) in sensor array
• 1856 - make sure that elec/grad channel units and that hdr.unit are specified for MEG systems, biosemi, brainvision and egi
• 1858 - ft_megplanar data not correctly identified as ctf275planar, but as ctf275
• 1859 - test_ft_sourcemovie not finished
• 1866 - add icasso-toolbox to fieldtrip/external
• 1870 - ft_datatype_sens flags planar gradient data as inconsistent
• 1872 - add Jim to the developers list
• 1874 - ft_componentclassification does not make correct use of the preamble and postamble
• 1875 - there are functions that use the ~ output argument, which is incompatible with older MATLAB versions
• 1878 - ft_artifact_clip returns a different number of artifacts
• 1880 - ft_componentanalysis method fastica ignores maxNumIterations (and possibly other options)
• 1881 - ft_selectdata_new fails to select frequency limits for coherence data
• 1882 - ft_selectdata_old fails to select frequency limits in freq subfield but not in cohspctrm subfield
• 1884 - Implement fallback .m files for nan*
• 1885 - make isequaln and isequalwithequalnans the same (former should be preferred since builtin)
• 1886 - implement various performance enhancements
• 1887 - extend ft_connectivityanalysis with measures for time-domain and component data
• 1888 - deployed fieldtrip crashes
• 1890 - ft_channelrepair does not seem to handle the new sens fields well
• 1892 - configuration tracking and callinfo tracking collide
• 1893 - Is there a standard format for warning IDs?
• 1895 - see Bug 1896
• 1896 - Bug in ft_freqanalysis since yesterday
• 1900 - ft_freqstatistics crashes on maci64, due to mex?
• 1901 - changes in units seems to affect SPM
• 1902 - ft_prepare_sourcemodel should use consistent unit handling
• 1903 - ft_removetmsartifact assumes cfg.pulseonset to be a cell array in some places, a double vector in others
• 1904 - clean up the dashboard, remove non-existent test scripts
• 1905 - make a function that translates between /home and h:\
• 1906 - consider implementing ft_evalfun
• 1909 - lay.label can be row
• 1910 - Problem with converting old style CTF grad
• 1911 - ft_movieplotER called from within ft_databrowser does not open in new figure
• 1915 - HERMES: connectivity analysis software
• 1916 - scalingfactor needs to be made faster
• 1917 - provenance with md5sum fails for very large input variables
• 1918 - clarify how data transformations are affecting the sens structure
• 1919 - merge planarchannelset with ft_senslabel
• 1920 - restore the complete svn revision history on the server
• 1921 - re-design ft_prepare_headmodel
• 1922 - extend and test functionality of ft_timelockgrandaverage
• 1929 - update documentation about neighbour structures in template wiki page
• 1932 - prepare_mesh_headshape may create NaN pnt values
• 1933 - ft_convert_units crashes with NaN in input
• 1934 - merge patch from googlecode for surface_intersection in branch
• 1935 - extra field: inside after ft_volumereslice
• 1936 - warning .img file couldn't be opened when ft_volumesegment is used
• 1938 - some small improvements to ft_analysispipeline
• 1939 - should ft_selectdata_new modify the output.cfg?
• 1940 - A crash when scaling EEG sensor array
• 1941 - ft_scalpcurrentdensity crashes if elec does not contain (optional) elecpos field
• 1942 - flank detection should look at difference, rather than absolute value of trigger channel
• 1944 - svn server started sending emails with "Subject: Output from your job 32 "
• 1945 - create function that allows for manual editing of boolean volumes...
• 1948 - ft_datatype cannot detect several vol-structures as volumes
• 1950 - trackconfig gets confused with other cfg
• 1951 - some of the test scripts started failing during the bug binge
• 1953 - Clarify the correctm naming for holm, holms, fdr
• 1956 - use volumesmooth in place of all calls to spm_smooth in FT code
• 1957 - implement fieldtrip menu option in figures and analysis pipeline
• 1959 - ft_senstype doesn't detect the appropriate grad type in comp data
• 1964 - order of ft_preamble calls should be consistent
• 1968 - Error in prepare_freq_matrices.m ?
• 1969 - ft_prepare_neighbours should first remove missing channels and then define neighbours rather thean the other way around
• 1971 - fix external/mne test script problem due to data not present on path
• 1972 - ft_scalpcurrentdensity should fail when input is MEG data
• 1973 - unbalancing warning might be confusing
• 1979 - ft_electroderealign should align elecpos not chanpos
• 1980 - ft_preamble/postamble_debug global variable name is different for preamble vs postable leading to high memory usage
• 1982 - CalcMD5 does not support input with size > 2^31
• 1983 - ft_prepare_sourcemodel should support cfg.grid.unit
• 1984 - appendfreq should also append cumtapcnt and cumsumctn
• 1985 - should ft_selectdata(_new) also subselect trialinfo, sampleinfo, cumtapcnt, cumsumcnt, etc.
• 1986 - wrong channel alignment by ft_combineplanar and ft_xxxgrandaverage when interpolated channels are present
• 1987 - inconsistency in handling of usercfg in provenance and merging of ft_defaults
• 1989 - find external functions that were downloaded from elsewhere and place them in external/misc
• 1990 - something is broken with regards to grad.balance
• 1991 - use callbacks in sourceplot
• 1993 - tissuelabel and tissuename in simbio headmodel
• 1994 - use callbacks in ft_volumerealign
• 1995 - indicate marked fiducials in ft_sourceplot
• 1996 - allow atlas lookup for slice viewmode in ft_sourceplot
• 2000 - make a python implementation of fieldtrip
• 2001 - re-think halting behaviour of ft_sourceplot
• 2002 - ft_volumesegment is missing ambles (eg time consumption)
• 2003 - WFU aal ROI_MNI_V4 atlas format not detected by ft_prepare_atlas
• 2004 - ft_connectivityanalysis: improve support for source level frequency domain data
• 2005 - ft_sourceanalysis: improve data handling
• 2006 - ft_prepare_sourcemodel: consider support for atlas-based parcellation
• 2009 - pinvNx2 function is missing, lmoutrn and lmoutr confusion
• 2010 - CalcMD5 is not compiled for mac 32-bit matlab
• 2011 - bug in nanmean m file (and possibly other nanXXX files?)
• 2012 - ft_sourceinterpolate checks for 'pnt' field, uses 'pos' anyway
• 2013 - review the list of mex files for all platforms
• 2018 - mvaranalysis does not update ntrl after redefinetrials
• 2022 - nanmean and nansum .mex files bug crashes matlab
• 2024 - ft_volumelookup cannot create masks based on anatomical labels alone
• 2028 - ft_channelselection needs to be reconsidered
• 2033 - implement replacement for signal processing toolbox
• 2034 - Error in ft_topoplotCC
• 2037 - small typo in HELP of ft_datatype_parcellation
• 2040 - nansum fallback behaves incompatible with the nansum mex file
• 2042 - ft_electroderealign function does not work for me with method: 'manual' and with method: 'template' & using headshape
• 2044 - eventtype can contain empty characters that should be removed
• 2048 - figure's menubar not updated during 'for' loop
• 2049 - ft_statistics_montecarlo: implement confidence intervals for p-value
• 2051 - ft_math does not work on secondary fields
• 2053 - implement roi selection in ft_selectdata
• 2054 - use rollback_provenance consistently when calling a high-level FT function from another
• 2056 - ft_defaults only runs once per matlab session
• 2058 - ft_freqstatistics does not output posclusterslabelmat in case there are no significant differences
• 2061 - ft_timelockanalysis: variance not computed if any period with dof=1
• 2062 - resolve some of the recent regression problems
• 2063 - Problem with freqcomparison reported on email list
• 2066 - no channselection in multiplot in interactive mode?
• 2067 - No unit conversion in ft_prepare_headmodel
• 2069 - freqstatistics does not respect channel order in data
• 2071 - ft_postamble history disregards multiple data structures
• 2072 - nanmean.mexa64 crashes
• 2078 - ft_singleplotTFR crashes with cfg.interactively='yes' and data cantains NaN
• 2080 - without any warning/message ft_volumesegment throws away csf, white and gray when cfg.output also contains brain
• 2081 - ft_combineplanar with combinemethod='svd' should be improved for raw/timelock
• 2083 - ft_prepare_atlas: deprecate this function
• 2084 - ft_sourceanalysis should give warning if crsspctrm is missing
• 2085 - ft_senstype needs to be made faster
• 2087 - layout file for M3 easycap
• 2088 - ft_multiplot edits labelcmb and throws it away
• 2089 - why does ft_multiplotTFR clear the current figure instead of axis
• 2090 - ft_rejectvisual holds the command-line while browsing trials/channels/summary
• 2091 - simbio seems to be missing for windows
• 2095 - make fieldtrip robust to matlab 2013a changes
• 2097 - rollback_provenance transforms strings to cells? (ft_math dimord checking faulty)
• 2103 - ft_freqstatistics: when input is rpt_chan_freq_time cfg.avgovertime = 'yes' gives error while monte-carlo+cluster
• 2104 - Unable to use ft_redefinetrial (fieldtrip-20130301) on MEG data preprocessed with older version
• 2106 - ft_rejectvisual: when cfg.mode = 'summary', plotting topographies using the 'trial plotter' results in an error
• 2111 - Problem with ft_prepare_layout
• 2112 - have ft_prepare_neighbours accept electrode file as template
• 2118 - inconsistent number of channels in sensor description after ft_freqanalysis
• 2120 - option to use Nutmeg coreg GUI for fiducial marking and electrode coreg
• 2121 - why are events stored in data.cfg.previous.previous etc?
• 2122 - fucked up channel order in ft_prepare_layout for subselection of channels
• 2123 - ft_checkdata and others: there are some conflicted files on /home/common/fieldtrip
• 2128 - ft_provenance cfg.trackcallinfo vs. ft_default.trackcallinfo
• 2129 - ft_timelockgrandaverage: provenance is never kept on input
• 2130 - ft_preamble_provenance can't handle large files
• 2131 - enginepool fails to start
• 2132 - confusing warning or enhancement needed in ft_channelrepair?
• 2134 - ft_pre/postamble_provenance: find alternative for calculating hash
• 2137 - ft_componentanalysis reports a randomseed error on newer versions of matlab
• 2138 - reading of updated atlas from wfu_pickatlas does not work
• 2140 - discrepancy between trials/time when filtering in-memory trials with mirror padding
• 2141 - $id information does not match in ft_singleplotER
• 2142 - memory issues with runica
• 2144 - Invalid precision error in loreta2fieldtrip
• 2146 - ica cleanup problems with numcomponent < numchannel
• 2147 - debate the meaning of 'once' in warning_once
• 2148 - fixdimord changes dimord chancmb to chan though labelcmb is there
• 2152 - ft_rejectvisual: also return trlsel
• 2156 - ft_megplanar.m fails when there is a channel label with less than 3 characters
• 2157 - Fietrip version 8101 is 2.3 GB
• 2158 - strange behaviour of ft_math
• 2162 - avoid eval and feval in main fieldtrip functions
• 2171 - remove deprecated code that has passed its expiration date (THT)
• 2175 - resolve concatenation warning in flattopwin
• 2180 - reimplement the ft_preamble and postamble
• 2181 - nanstd: segfaults on singles
• 2182 - ft_freqanalysis does not support the method 'mvar'
• 2183 - MNE does not allow lambda to be in percentage (e.g. cfg.mne.lambda = '5%')
• 2184 - settle on convention for upper/lower case method names
• 2185 - enhancement: keep time dimension in ft_sourcegrandaverage.
• 2186 - ft_appendtimelock: some bugs and documentation needs
• 2187 - ft_appendfreq does not give a freq in output
• 2189 - freqanalysis with cfg.keeptrials='no' keeps cumtapcnt
• 2190 - autosync does not work properly anymore?
• 2191 - ft_selectdata (new vs old) avgoverchan: mean or sum?
• 2193 - reading of AAL atlas is broken since revision 8179
• 2194 - enhancement: allow ft_databrowser to mark entire trial as artifact with single keystroke
• 2195 - ft_lateralizedpotential.m strmatch
• 2196 - reconsider merging used cfg with ft_default
• 2197 - avgoverrpt support in ft_selectdata_new or ft_freqdescriptives with labelcmb and chancmb
• 2198 - throw an explicit warning by default when cfg options are not used?
• 2199 - remove cfg.transform from ft_sourcedescriptives
• 2202 - ft_hastoolbox: crash when doing ft_hastoolbox('SPM8UP', 1) ...
• 2206 - implement bootstrap method for statistics
• 2207 - some files have the "subversion does not use Log" comments in them
• 2208 - implement drop-in replacement function for finv
• 2209 - MATLAB documentation states strmatch is not recommended, use STRNCMP instead
• 2211 - data.trial contains only NaN after preprocessing on neuroscan cnt files in a newer version of fieldtrip
• 2215 - do not store test data in the svn/git repository
• 2218 - ft_sourceinterpolate does not take 'all' as a parameter
• 2221 - problem plotting two averages at once with ft_multiplotER
• 2222 - unsupported dimord structure in ft_freqcomparison, to be replaced by ft_math
• 2224 - cfg.previous fails for ft_selectdata
• 2225 - speed up warning_once
• 2227 - extend ft_redefinetrial with interpolation of missing data, i.e. where the TMS pulse used to be
• 2229 - Strange results of ft_sourcestatistics
• 2230 - ft_connectivity_granger/csd2transfer: redesign handling of blockwise and blockwise/conditional
• 2232 - external/gifti.m: cannot handle the label table from caret label files
• 2233 - ft_rejectartifact: fails to execute artifact_xxx since the compat directory has been reorganized
• 2234 - bug binge august 9: reserve a room
• 2235 - ft_denoise_synthetic changes grad labels
• 2237 - rollback_provenance: fails when data structure lacks a cfg-field that is a structure
• 2238 - read in and segment Netstation data
• 2244 - make a youtube video explaining the various types of padding
• 2249 - ft_volumesegment does not return .anatomy field anymore
• 2254 - ft_topoplotIC produces warning that interactive plotting is not supported
• 2255 - cfg.previous is very large after source statistics slowing matlab workspace managing
• 2256 - ft_componentanalysis with method = 'binica' does not work, also consider implementing 'mexica'?
• 2257 - ft_rejectartifact throws an error when replacing artifact with nans
• 2258 - bug binge: organize one on sept 18
• 2259 - nansum needs to be compiled for win32/64
• 2260 - ft_selectdata_new removes .avg field in timelock data if keeptrials = 'yes'
• 2261 - does svn autosync working fine?
• 2269 - ft_rejectartifact does not work for trials with overlapping samples
• 2282 - browse_multiplotER & browse_movieplotER use depricated function calling
• 2284 - ft_multiplotTFR: working with connectivity data and cfg.refchannel='gui' crashes
• 2285 - ft_appendfreq: no support for frequency structures with labelcmb
• 2287 - implement tfce
• 2292 - replace all occurrences of dhk with tri
• 2297 - atlas_lookup uses deprecated atlas
• 2298 - nanvar fails at offset of 1e8 in test_nanstat test script
• 2301 - documentation and code are inconsistent in powcorr_ortho implementation
• 2302 - add a proper walltime and mem estimate to the execution of the test scripts
• 2304 - ft_databrowser trouble accessing visual artifacts
• 2305 - implement code guideline on usage of function...end
• 2306 - get Haiteng started as developer
• 2307 - ft_dipolefitting
• 2308 - ft_clusterplot does not like ANOVAs (which can only return positive clusters)
• 2310 - allow more anonymous pipeline execution by not storing the time and date
• 2312 - ft_databrowser: team up Roemer with Craig to improve the databrowser
• 2314 - MOFB - mother of all ft_databrowser bugs
• 2315 - ft_databrowser: add/discuss multicolumn layouts
• 2318 - Databrowser - use axis limits to page data, rather than redraws
• 2322 - the icp function is not compatible with its use in ft_volumerealign
• 2324 - data.cfg field required for plotting
• 2327 - stay consistent with cfg.parameter being mandatory for freq-data
• 2328 - ft_sourcestatistics with cfg.roi yields NaN clusters
• 2330 - ft_appenddata unnecessarily removes sens information
• 2331 - ft_channelrepair should update grad.tra
• 2332 - add chanposorg and labelorg to grad/elec structures
• 2334 - ft_trialfun_general selects wrong events after r8613
• 2335 - ft_databrowser doesn't handle queued key presses properly
• 2340 - merge sourceanalysisDICS with test_ft_sourceanalysis
• 2342 - ft_connectivity_csd2transfer: zigzags
• 2343 - warning_once should check time passed as well as stack trace
• 2348 - ft_databrowser channel identify in vertical mode
• 2353 - rename scalingfactor into ft_scalingfactor and move from private to utilities
• 2355 - get rid of the cfg.sourceunits option
• 2356 - get rid of the cfg.units option
• 2357 - split ft_convert_units in a determine and convert function
• 2358 - ft_prepare_sourcemodel has a non-standard way of dealing with the input arguments
• 2359 - ft_prepare_sourcemodel should be extended with cortical sheet manipulation options, like spherify
• 2360 - allow ft_statistics_stats to output t-values for all cases when t-test is used
• 2362 - cfg.toi in ft_freqanalysis
• 2363 - ft_selectdata_new fails on chan_freq data (and possibly other?) when selecting channels
• 2365 - Fourier output of time-frequency methods (mtmconvol, wavelet) does not work with variable-length trials
• 2366 - Use consistent terminology in fprintf / warning /error messages
• 2367 - ft_sourceanalysis: output contains source.method, consider removing
• 2368 - openmeeg gives error with windows
• 2369 - the solid_angle mex file crashes with single-precision input data
• 2372 - ft_timelockstatistics crashes on data with keeptrials='yes' and cfg.parameter='avg'
• 2374 - update the utilities/private/randomseed function
• 2378 - ft_redefinetrial: does not seem to copy over the last columns of a trl matrix into data.trialinfo
• 2379 - sfactorization_wilson2x2 breaks
• 2381 - error in ft_sourcestatistics?
• 2383 - provenance of the mesh is not passed correctly into volume conductor
• 2385 - create 3D easycap elec-files
• 2388 - consider adding support for cytoarchitectonic atlas
• 2392 - template directory: remove anatomy/single_subj_T1 ...
• 2393 - add Nietzsche to the name list at the bottom of the page
• 2394 - ft_selectdata (_old and _new) does not deal consistently with selecting 0 trials
• 2397 - merge ft_iso2surf into ft_prepare_mesh
• 2398 - merge the functionality of ft_leadfield_openmeeg into the regular fieldtrip functions
• 2402 - matlab 2012a does not support optimset in dipole_fit
• 2404 - ft_channelrepair returns a grad field which was not present before
• 2405 - channelconnectivity fails on test_bug2404
• 2406 - ft_channelrepair should have method=average
• 2407 - function handles with warning_once
• 2408 - ft_datatype_volume does not specify unit as an optional or required field
• 2411 - implement matching pursuit decomposition
• 2414 - Neuralynx headers include unicode characters, which can crash ft_read_neuralynx_interp
• 2418 - ft_senstype does not return neuromag306alt
• 2419 - non-existent field 'use_tri_area'.
• 2420 - beamformer tutorial test scripts need excessive resources on torque
• 2421 - allow specification of units in ft_dipolesimulation
• 2422 - pos2dim3d needs the statistics toolbox for a simple zscore
• 2423 - Bug Johanna with a bug
• 2424 - ft_prepare_layout from sens rather than from elec/grad
• 2425 - ft_datatype_sens fails on montaged grads
• 2427 - ft_prepare_layout with cfg.feedback = 'yes' opens two figures
• 2428 - wilson2x2 complains about unequal frequency axis with foilim = [0 Ny]
• 2431 - mpi_customized_acticap64 layout can be improved
• 2437 - consider using image opening to post-process thresholded map when doing (source) statistics
• 2441 - anatomy/template: low res and hi res MRIs are stored with left vs right-handed axes system
• 2442 - ft_determine_coordsys is inconsistent with coordsys='unknown'
• 2444 - ft_selectdata_new fails on component data
• 2445 - external/stats mex files are missing for 32 bit linux
• 2449 - ft_read_sens produces NaN labels for easycap files
• 2450 - ft_rejectvisual fails on data that is all-zero
• 2452 - mxSerialize/mxDeserialize not available in R2014a
• 2455 - ft_sourcestatistics crashes on volume structure in input
• 2456 - ft_volumerealign gives no output
• 2457 - why does connectivityanalysis using 'pdc' suggest to use cfg.granger.channelcmb?
• 2458 - typo in statistics_wrapper
• 2459 - Error in ft_postamble_history > warning_once
• 2460 - ft_datatype error with two (logical) mask fields
• 2461 - 2014b, Handle Graphics 2 and FieldTrip
• 2463 - cfg.channel option leads to unexpected results with various functions due to changes in ft_senstype
• 2464 - ft_selectdata "cfg.foilim" setting is ignored but its use is recommended in the help
• 2467 - make test script for TactileStimulusDipolefit
• 2469 - ft_connectivityanalysis with method='powcorr_ortho' does not work with freq data
• 2470 - Allow freq statistics over custom fields
• 2471 - ft_timelockgrandaverage does not handle differences in trial length under 'within'
• 2473 - ft_databrowser: crash when using preproc window containing vector more than once
• 2476 - fr_freqanalysis_mvar gets confused with the loadvar due to it being wrapped in ft_freqanalysis
• 2477 - ft_connectivity_psi gives incorrect output
• 2478 - Adapt ft_preamble to detect prior existence of cfg.outputfile and subsequently skip the caller function
• 2479 - timelockstatistics lead to error when averaging across channels
• 2482 - support segmented brainvision data with its own trialfun
• 2483 - ft_selectdata_new: avgovertime = 'yes' removes time field and changes dimord
• 2484 - implement ft_deidentifydata function for anonimization purposes of fieldtrip data structures
• 2488 - issubfield not available from ft_defaults
• 2490 - implement support for synchronizing MEG data with video and/or audio recordings
• 2491 - ft_clusterplot should check if cfg.correctail option was use to warn the proper pvalue
• 2495 - MEX file error during execution of ft_timelockanalysis
• 2498 - recompile mex files on win32
• 2500 - why is cfg.latency in ft_timelockanalysis deprecated?
• 2502 - ft_freqstatistics requires XXXparameter ormat for parameter names, which is not clear from the documentation
• 2503 - nearest.m function in utilities overrides original matlab function of the same name
• 2504 - move dccnfilename to utilities
• 2505 - remove symbolic links from svn repository
• 2507 - unexpected behaviour of ft_appenddata when appending more than two datasets
• 2508 - make it optional whether dimensions are kept after averaging with ft_selectdata
• 2509 - makeselection_cumtapcnt is causing problems in data without cumtapcnt
• 2510 - ft_statfun_diff throws an error
• 2511 - ft_read_headshape error in line 888 since last change to function
• 2513 - check data field consistency through different data type structures
• 2517 - merge ft_checkdata/fixsource with ft_datatype_source
• 2518 - ensure that component data can be used as input in sourceanalysis, dipolefitting and all other functions
• 2519 - isequalwithequalnans is not recommended, use isequaln instead
• 2520 - ft_checkdata fails on componentanalyzed timelock data
• 2521 - ft_volumerealign: restructure the headshape method
• 2522 - ft_appenddata returns sampleinfo-error when concatenating channels
• 2523 - implement ft_crossfrequencyanalysis function, pipeline and documentation
• 2526 - ft_prepare_sourcemodel and mri.coordsys
• 2528 - ft_math problem with .avg in timelock data
• 2529 - ft_volumerealign: revamp the user interface
• 2532 - Problem in ft_apply_montage
• 2536 - ensure correct double selections in ft_selectdata
• 2538 - update all calls to ft_selectdata_old to use the common (newer) implementation
• 2539 - unnecesary data check ft_topoplotIC
• 2540 - ft_volumesegment: segmented mri incorrectly inherits units from input mri
• 2541 - ft_interactiverealign: crash when closing the figure
• 2542 - Fix regression errors due to ft_selectdata
• 2543 - test_tutorial_beamformingextended: figure created with data on disk does not match the figure in the tutorial
• 2544 - ft_sourcegrandaverage error due to field dimord not being detected properly
• 2546 - ft_selectdata 'avgovertime' does not remove time from the resulting structures dimord
• 2552 - use consistent naming of figures and titles
• 2555 - Strange shape of Granger spectrum
• 2556 - ft_sourceparcellate
• 2558 - ft_timelockstatistics crashes because of dimord
• 2559 - ft_databrowser crashes on plotting timelock averaged component data
• 2560 - ft_sourceplot: verify correctness of 'ortho' display
• 2561 - ft_selectdata and getdimord
• 2562 - time axes numerical imprecision with ft_redefinetrial overlap option
• 2563 - ft_selectdata (new version) cannot avgoverfreq using alternative parameter names
• 2566 - ft_topoplotER (presumably topoplot_common) computes its own on-the-fly avg when tl.individual is present
• 2567 - add subfunctions isrow and iscolumn to ft_selectdata
• 2570 - improve the unit handling in ft_apply_montage
• 2571 - bug in ft_componentanalysis
• 2573 - databrowser cannot plot components since sample info is missing
• 2576 - grid search results in "using gradiometers specified in the configuration" message even for EEG data
• 2577 - improve the svn log messages for autosync updates
• 2578 - extend ft_math with (a-b)/(a+b) and more fancy stuff
• 2579 - ft_source* functions should gracefully deal with cfg.parameter containing either avg.XX or XX
• 2580 - bug with preprocessing, abort is undefined
• 2584 - ft_selectdata: new version does not correctly select trials from a raw data structure
• 2585 - ICA for same data differ even using fixed random seed
• 2586 - monte carlo p-values
• 2587 - follow up on the discussion about data analysis assistance within the DI
• 2589 - ft_selectdata detects second dimension of sampleinfo as channels
• 2590 - implement ft_removetemplateartifact function for Tom's TDCS artifacts
• 2592 - fieldtrip/template/anatomy: get improved inflated surfaces
• 2593 - confusion between cfg.numcomponent and cfg.fastica.numOfIC
• 2594 - ft_volumelookup error with row vs column atlas.tissuelabel
• 2596 - ft_sourcegrandaverage with cfg.inputfile leads to error by ft_selectdata / ft_preamble
• 2597 - ft_selectdata alphabetizes labels, this leads to wrong leadfield order with ft_prepare_leadfield
• 2606 - Problem with ft_timelockstatistics (montecarlo) with avgoverchan = 'yes'
• 2609 - ft_sourceplot with cfg.atlas/.roi throws error (line 345)
• 2610 - ft_timelockanalysis fails for component input data
• 2612 - atlas_lookup fails for mouse data
• 2613 - ft_freqanalysis inconvenience with comp+raw
• 2617 - ft_math, ft_redefinetrial, and dof
• 2621 - ft_volumesegment ignores/breaks mri.unit
• 2622 - ft_appenddata typo
• 2625 - ft_freqanalysis seems to ignore cfg.channel
• 2629 - ensure that all files have the correct line endings (dos/unix)
• 2630 - implement ft_globalmeanfieldpower
• 2634 - ft_rejectcomponent: incorrect elec/grad balancing when comp and data in input
• 2636 - extend ft_electroderealign with automated electrode positioning for 40 electrode mouse grid
• 2639 - ft_sourceanalysis and ft_checkdata, possible channel ordering bug?
• 2643 - ft_sourceinterpolate crashes (Undefined function or variable 'abort')
• 2644 - ft_freqbaseline cannot handle subj_chan_freq_time
• 2645 - ft_timelockanalysis does not deal properly with data containing NaNs
• 2646 - ft_freqanalysis now requires explicit channel input and does not default to 'all'
• 2647 - No clusters using actvsblT in ft_freqstatistics
• 2648 - ft_specest_mtmconvol with padding should allow estimates at edge time bins
• 2650 - check chanunits data saved on disk
• 2652 - ft_prepare_layout is not keeping provenance correctly
• 2653 - ft_preprocessing returns NaNs if bsfilter is combined with precision = 'single'
• 2655 - rollback_provenance interferes with configuration tracking
• 2658 - mxSerialize_cpp
• 2659 - Failure of ft_timelockgrandaverage with keeptrials=1 timelock data
• 2660 - ft_timelockgrandaverage fails if cfg.parameter is set to 'avg' but dimord includes repetition.
• 2663 - ft_rejectvisual sorting of minimum values
• 2664 - error with comp input into ft_sourceanalysis
• 2665 - ft_selectdata excludes data.fsampleorigwhich is required for maranalysis, due to unknwin dimord,
• 2666 - test_ft_datatype_sens fails because labelorg is not present
• 2667 - test_ft_selectdata fails because old cumsumcnt is an empty matrix 0x1 but new is [] ...
• 2668 - ft_rejectvisual plots non-zero variance as zero
• 2669 - use of 'avg' field with ft_sourceinterpolate
• 2670 - ft_selectdata strips fsampleorig from mvar input data
• 2671 - error when fitting dipole to independent component
• 2673 - ft_rejectvisual plots all channels
• 2674 - spike functions get errors because ft_preamble_trackconfig
• 2676 - export provenance (data.cfg.previous) to PROV format
• 2680 - ft_timelockanalysis does not compute minperlength correctly
• 2684 - MOMEEG - Mother of all combined MEG-EEG bugs
• 2685 - ft_scalpcurrendensity blocks on combined MEG-EEG dataset
• 2689 - ft_datatype returns error because function 'fieldnames' is not recognized
• 2698 - fieldtrip is bugging out eeglab extensions
• 2700 - ft_resampledata: revamp user interface
• 2701 - get Jennifer started as developer
• 2703 - function pos2transform takes only one input argument but in ft_checkdata is called with 2
• 2705 - ft_rejectvisual does not keep channels with cfg.keepchannel='yes'
• 2707 - implement ft_volumerealign based on fiducial clicking in 3D skin surface mesh
• 2709 - config/subsref results in: Non-overloaded subscripting can produce only one result
• 2710 - enhancement for ft_databrowser 'next segment' button
• 2711 - ft_math checks wether a field is present, then crashes anyways if it is not
• 2712 - cfg.trl option doesn't seem to work in ft_databrowser
• 2713 - ft_databrowser does not plot labels
• 2714 - ft_databrowser displays black screen under some conditions
• 2715 - ft_math: suggestions for improvement
• 2719 - cfg.trials=[]; in ft_selectdata results in cfg.trials = 'all';
• 2723 - ft_math should support cell input for cfg.parameter
• 2724 - ft_multiplotXX printing in landscape mode should be option, not default
• 2726 - ft_math takes very long to compute operations
• 2730 - ft_sourceplot: on-the-fly surface interpolation works not as expected according to a user
• 2731 - ft_preproc_bandstopfilter - Number of input arguments
• 2732 - demeaning in ft_resampledata when data has nans
• 2736 - ft_trialfun_general crashes after reading EDF+ file
• 2737 - ft_resampledata should support downsampling, i.e. without an anti-aliasing filter
• 2738 - is it possible to switch off the autocorrect functionality while typing comments in bugzilla?
• 2742 - prevent power from being removed as 'probabilistic' field
• 2743 - error when calling ft_mvaranalysis (for granger connectivity computation)
• 2744 - in ft_sourcedescriptives source.avg.csdlabel is not consistently updated resulting in an empty cell array
• 2748 - Redundant or unnecessary work in ft_sourceanalysis
• 2749 - ft_source2full fails when dealing with Nvox x Nvox data
• 2752 - MATLAB2014b stuck ft_databrowser
• 2753 - Getting started with fNIRS (and fNIRS/EEG)
• 2754 - selectdata does not avgovertime
• 2756 - ft_volumerealign crash when plotting (looks for fields not present in mri)
• 2758 - ft_prepare_headmodel(cfg) fails with single argument
• 2759 - matlab2014b neighbourplot interactive channel selection does not work properly
• 2760 - databrowser data selection not possible anymore
• 2761 - ft_connectivityanalysis method=corr has time in output
• 2762 - deprecate/revamp prepare_freq_matrices
• 2764 - use explicit reshape instead of squeeze
• 2765 - senstype gives inconsistent type for planar and planar_combined layouts
• 2768 - Cannot combine opacity and atlas in ft_sourceplot
• 2769 - make ft_sourceplot and ft_sourceinterpolate behave consistently
• 2772 - color limits are not set correctly by ft_sourceplot in ortho mode on matlab 2014b
• 2775 - ft_electrodrealign does not find function (not in /utilities/private)
• 2777 - freq2timelock / timelock2freq
• 2778 - ft_regressconfound potentially copies unwanted fields over from input to output
• 2779 - ft_timelockanalysis should distinguish between trialdimord and avgdimord/vardimord
• 2780 - ft_regressconfound is not reliable in detecting confounds
• 2782 - ft_selectdata doesn't keep .trialinfo correctly if 'rpt_chan_time' but with only 1 trial
• 2783 - ft_definetrial doesn't work with timelock data of 'rpt_chan_time' with only 1 trial
• 2784 - Error in ft_mvaranalysis
• 2785 - ft_timelockgrandaverage selects wrong time window and thus returns wrong results
• 2786 - merge ft_freqgrandaverage with ft_timelockgrandaverage
• 2787 - implement compiled ft_standalone and allow it to be called from qsubcellfun
• 2788 - ignore this bug
• 2789 - ft_checkdata fails in ft_sourceanalysis for TFR with nfreq=1 and ntime=2
• 2790 - ft_connectivityanalysis fails with cfg.trials
• 2791 - ft_checkdata/createdimord should be merged with getdimord
• 2792 - ft_volumerealign does not store provenance correctly
• 2795 - use new data handling for ft_timelockstatistics, ft_freqstatistics and ft_sourcestatistics
• 2796 - do not use source.avg.xxx in any FieldTrip function and use logical inside
• 2799 - not cleaning up .hdr file: align_itab2spm and align_ctf2spm
• 2801 - calling ft_stratify gives error when too many Curve Fitting Toolbox licenses are used
• 2807 - ft_appendtimelock and ft_appendfreq: upgrade these functions
• 2809 - ft_freqstatistics produces error when cfg.frequency only has one numeric element
• 2810 - get Luca and Remco started as developers
• 2813 - ft_statfun_diff_itc doesn't create/output a critval
• 2816 - getdimord -- getdimsiz infinite loop
• 2817 - bemcp output not 'sensible'
• 2825 - ft_electrodrealign does not work with method='template' and using headshape
• 2826 - ft_freqstatistics reference to nonexistend field "inside"
• 2827 - ft_prepare_sourcemodel does not update 'inside' field with tight grid
• 2829 - error in clusterstat due to cfg.inside (but related to cfg.dim in ft_freqstatistics)
• 2830 - error in ft_sourcestatistics (spm_bwlabel CONN must be 6, 18 or 26)
• 2832 - cfg.debug=saveonerror fails after rollback_provenance
• 2834 - ft_selectdata/ft_sourceanalysis handling of .crsspctrm when channels have been subselected
• 2835 - bug binge: diagnose and/or fix broken testscripts that were still working recently
• 2839 - allow spm12 as full alternative to spm8
• 2840 - diagnose and/or fix testscripts that fail to run properly
• 2841 - ft_preprocessing doesn't select channels anymore
• 2842 - ft_sourcedescriptives crashes because ft_datatype_source removed source.avg
• 2843 - ft_sourceinterpolate fails on avg.pow of mne output
• 2847 - weird interaction of ft_sourceanalysis, ft_selectdata(new and old), and prepare_freq_matrices
• 2848 - ft_timelockstatistics doesn't cluster properly with custom neighbours struct
• 2851 - merge freq2timelock and comp2timelock into ft_checkdata
• 2852 - deprecate ft_analysisprotocol
• 2858 - ft_sourcegrandaverage error due to .pos field
• 2860 - ft_rejectvisual
• 2861 - ft_sourceanalysis keeps data.filter leading to an error in later sourcestatistics
• 2863 - implement plan for server room migration
• 2864 - ft_sourcedescriptives produceses NaNs only (since revision 10263)
• 2867 - ft_sourceanalysis keeps filter in output even though cfg.keepfilter = 'no'
• 2873 - ft_scalpcurrentdensity does not fully implement Perrin method
• 2874 - ft_sourcegrandaverage of a field that is not 'pow'
• 2875 - ft_sourceanalysis with method 'dics' fails due to non existing field 'label'
• 2877 - implement an ft_deface function
• 2879 - ft_sourcestatistics: failure with multiple MNE source results
• 2884 - Bug in ft_definetrial
• 2886 - ft_freqstatistics crashes for freq/freq_time data without channels
• 2889 - enhancement-add optional warning for using default values in ft_getopt
• 2890 - ft_artifact_tms: redundant but potentially confusing field in cfg.artfctdef.tms.method
• 2896 - ft_selectdata does not extract selected frequencies
• 2898 - ft_sourcestatistics: low-level machinery does not seem to take into account inside
• 2901 - implement a FieldTrip usage tracker
• 2903 - replace the FT findcluster function with the refactored version from LIMO
• 2904 - Implement the threshold free cluster enhancement (TFCE)
• 2905 - improve SMR file format to read spikes and lfps
• 2906 - ft_volumereslice fails for mris not in millimeters
• 2910 - uint64 arithmetic operations can crash Matlab
• 2912 - ft_platform_supports relies on matlabversion (which it intends to replace)
• 2913 - Typo in ft_getopt.c (mxErrMsgTxt) renders MEX-file invalid in R2015b
• 2916 - negative trlpadding incorrectly disallowed with in-memory data
• 2917 - ft_selectdata sorts cfg.channel, channelconnectivity uses this regardless of actual channel order in data
• 2919 - interactive functionality ft_prepare_neighbours broken
• 2922 - iscolumn is missing in matlab 2010a
• 2927 - ft_warning: missing ignore field. I.e. who warns the warning?
• 2928 - ft_volumesegment fails on 2015a
• 2929 - ft_artifact_zvalue expects function hline - not part of distribution?
• 2933 - ft_dipolefitting crashes due to todays changes.
• 2934 - keep a number of (external) channels constant when using ft_databrowser on MEG data
• 2935 - ft_artifact_zvalue does not detect jumps
• 2936 - ft_artifact_zvalue: interactive mode is broken in matlab 2013b
• 2937 - ft_transform_geometry doesn't transform the chanori field of a sensor definition
• 2938 - Error in mergeconfig (line 30) input.(fn) = default.(fn);
• 2939 - conflict in cfg.headshape.headshape & cfg.individual.headshape in ft_volumerealign & ft_interactiverealign respectively
• 2941 - VAT-Modelling in Fieldtrip/Simbio
• 2946 - improve exporting of FieldTrip data to BESA for external processing
• 2947 - Not suppressing label-input
• 2948 - migrate external FieldTrip SVN away from google code
• 2949 - ft_selectdata does not work with comp (IC) data
• 2950 - ft_rejectvisual returns wrong sampleinfo for rejected trials on concatenated data
• 2951 - implement lagged coherence in ft_connectivityanalysis
• 2957 - revamp functionality to convert between different representation of freq-domain data
• 2958 - ft_connectivity_mim: implement functionality
• 2959 - prepare_freq_matrices does not work on data that is derived from 'mtmconvol'
• 2961 - ft_selectdata: unexpected behavior of ft_selectdata when selecting across time
• 2962 - ft_selectdata: 'rpt_chan_chan_etc' data gets incorrect dimord when 'avgoverrpt' is 'yes'
• 2963 - ft_freqanalysis does not support mirror padding
• 2965 - ft_checkdata errors for average data with dimord of rpt_chan_time but no trial field
• 2966 - ft_databrowser not creating cfg.headerfile for EDF
• 2971 - ft_sourcestatistics throws away test data, even if specified in cfg.parameter
• 2972 - clusterstat.m crashing with Matlab 2015b
• 2973 - implement getdatfield as replacement for parameterselection
• 2974 - the standard 3D sourcemodel on disk still have the old-style inside/outside definitions
• 2976 - ft_preamble and ft_postamble are not fully supported on matlab 2015b
• 2978 - "Plot Trial" button on GUI for ft_rejectvisual (summary mode) plots average of all trials instead of the single trial requested
• 2981 - duplicate code: ft_statfun_depsamplesF.m and ft_statfun_depsamplesFmultivariate.m
• 2982 - cfg.debug=saveonerror should be supported by all main FT functions
• 2983 - add probabilistic atlas of 22 visual areas
• 2985 - Error when using sfg.spmparams.flags
• 2988 - have ft_combineplanar also return the orientation in case of method=svd
• 2989 - make FieldTrip compatible with MATLAB 2015b
• 2990 - source and sensor level results do not match: left and right hemispehres are swapped
• 2992 - ft_statfun_correlationT is prone to cross-condition bias when creating the permutation distribution
• 2994 - ft_freqstatistics crash when dimord is 'subj_freq_time'
• 3001 - inside field is not kept in the output structure during the call to ft_math
• 3002 - ft_defaults crashes when checkMultipleToolbox tries to call ft_warning
• 3004 - making cfg.trialdef.eventtype = '?' the default
• 3005 - ft_rejectvisual: summary mode doesn't work for single trials
• 3007 - provenance handling breaks output of ft_detect_movement
• 3008 - FDR thresholding wrong
• 3010 - failure of ft_volumesegment
• 3012 - fltpadding doesn't work with data in memory
• 3014 - ft_prepare_mesh: functionality for calling isosurface on non-boolean volumes
• 3015 - ft_prepare_headmodel: when calling ft_prepare_mesh, cfg.method may not be configurable for the lower-level function
• 3019 - error using fieldtrip functions in a gui.
• 3021 - github and svn not synced to latest version
• 3024 - ft_freqdescriptives: failure to go from fourier output to powspctrm when only 1 channel and one rpt
• 3025 - ft_prepare_sourcemodel: failure with resolution option without sensor description
• 3028 - ft_appendfreq: does not keep the gradiometer structure
• 3029 - ft_sourceanalysis: failure when using 'dics' as method with fourier input
• 3030 - private/clusterstat: function is unnecessarily very slow when clustering scalar-valued 'pos' vector with triangulated neighbourhood
• 3031 - implement ft_volumereorient
• 3032 - add "restore all" button to GUI for ft_rejectvisual in summary mode
• 3035 - ft_apply_montage incorrectly deals with channels containing NaNs
• 3036 - Multiple dipoles in ft_dipolefitting.m
• 3037 - Inconsistent results with ft_dipolefitting
• 3038 - make consisten use of "unit" instead of "units"
• 3040 - ft_connectivity_mutualinformation is missing
• 3043 - allow frequency specific baseline in ft_freqbaseline
• 3048 - randomseed functionality was removed from ft_statistics_montecarlo in 2013. why?
• 3049 - migrate from svn to github
• 3050 - implement support for the SensoMotoric Instruments (SMI) eye tracker
• 3051 - ft_read_header jams for Neuromag .fiff file, because reliance on "fiff_read_epochs" that does not appear part of MNE toolbox
• 3052 - ft_appendsource: function does not work
• 3053 - script that ran on MatlabR2013a won't run on MatlabR2015b - home version
• 3055 - ft_prepare_headmodel 'dipoli' output does not contain the vol.mat field
• 3063 - build support for Nihon Koden M00 data files
• 3064 - rollback_provenance in ft_multiplotER breaks trial selection
• 3065 - version number and provenance need to be updated to reflect svn->github migration
• 3068 - ft_warning crashes when stack contains > 63 character name
• 3071 - ft_version leaves excessive tmp files
• 3073 - correct computation of coh and plv fails with fourier input
• 3074 - Unable to plot component topography Matlab 2015b: "Error using surf X, Y, Z, cannot be complex"
• 3075 - Can't use cfg.inputfile and cfg.outputfile commands
• 3076 - [ws, warned] = ft_warning(varargin)
• 3077 - nargin seems to be both a variable and a function in ft_rejectcomponent
• 3078 - ft_sourceanalysis error precomputed grid.filter
• 3080 - exist.m second input during ft_sourceanalysis
• 3081 - ft_volumerealign error due to pnt/pos
• 3082 - ft_statfun_indepsamplesregrT does not correct df's for multiple independent variables
• 3083 - ft_connectivitysimulation should have a cfg.randomseed option
• 3084 - ft_connectivityanalysis with cfg.method='psi' fails
• 3086 - ft_analysispipeline gives weird result on anonimized tutorial data
• 3087 - running ERF clusterstats tutorial results in quite different plots from wiki
• 3090 - ft_volumerealign: intensity sliders fall outside the figure window
• 3091 - merge the two versions of matlablt2010b
• 3093 - ft_artifact_zvalue>redraw_cb looks for cfg.datafile instead of the input data
• 3094 - point for discussion: warning about p-value confidence intervals in ft_statistics_montecarlo
• 3095 - ft_convert_coordsys fails without spm on the path
• 3096 - make a graphical channel selection
• 3098 - noisy figure output using ft_sourceplot
• 3100 - Aerospace Blockset matlab toolbox interfere with built-in function "exist.m"
• 3107 - ft_volumerealign problem with scalp.pos / scalp.pnt
• 3108 - Field Trip 20160415 dpss function impairment
• 3109 - ft_combineplanar does not work for trials containing one bad planar gradient chaannel
• 3110 - ft_redefinetrial does not smoothly pass on structure fields when input data is comp
• 3117 - kiel workshop issues - refine failed
• 3118 - ft_artifact_zvalue give an error with button press using mouse but keyboard works fine
• 3119 - fitting 2 moving dipoles with constr.sequential = 1 probably wrong
• 3122 - fieldtrip2fiff cannot export date containing more than 10 values of a given event type
• 3124 - ft_sourceanalysis does not select multiple frequencies with cfg.foilim
• 3125 - ft_electroderealign with method='fiducial' does not work properly for me
• 3127 - implement a pipeline for MEG source reconstruction if no MRI is available
• 3128 - incorrect dimord after ft_connectivityanalysis
• 3129 - appendstruct doesn't run
• 3131 - ft_getopt.mexw64 missing
• 3132 - hasdata variable in ft_layoutplot is not initialized
• 3134 - ft_singleplotTFR 'ismatrix' function is missing
• 3135 - ft_channelselection selects channels it shouldn't because wild card is added
• 3138 - improve support for R2016b
• 3139 - improve support for R2016a
• 3140 - ft_electroderealign method fiducial asks elecpos
• 3141 - extend ft_defacevolume to deface (headshape) meshes, e.g. those from the 3D scanner
• 3142 - add coordsys field consistently to more data-objects
• 3143 - ft_prepare_neighbours error with unexpected channel unit
• 3144 - ft_checkdata_sens returns error when using MEG structs that worked fine last week
• 3145 - ft_nargin between two versions of fieldtrip
• 3147 - interp_gridded is broken
• 3149 - ft_prepare_mesh/ft_prepare_headmodel fails in tutorial
• 3150 - critical value for indepsamplesT
• 3151 - round(true) fails on R2014b
• 3152 - Undefined function 'mvnrnd' for input arguments of type 'double'.
• 3153 - ft_statfun_pooledT fails on 2015b (Field assignment to a non-structure array object), works on 2015a
• 3155 - ft_channelselection returns "Empty cell array" when senstype is neuromag306_combined
• 3156 - add 10-20 model-based electrode placement code to ft_electrodeplacement
• 3158 - ft_datatype: new 'pointcloud' datatype clashes with source datatype
• 3159 - some test scripts don't specify a correct memory or wall time requirement
• 3160 - ft_sourceanalysis cannot deal with larger .grad structure than data
• 3161 - Add support for cross-spectrum to ft_freqdescriptives
• 3163 - error in pos2dim - can't index with NaNs
• 3165 - ft_prepare_layout doesn't work anymore with integer coordinates
• 3170 - output of ft_prepare_leadfield and thus ft_sourceanalysis depend on unit of the grid when using grads and mags
• 3171 - spm12 not installed
• 3173 - ft_checkdata fails if mesh doesn't have a .tri field
• 3174 - problems aligning CT and MRI using ft_volumerealign
• 3176 - ft_electroderealign problems with cfg.headshape.pnt and .pos
• 3177 - ft_electroderealign expects field headshape.tri
• 3180 - uicontrol is not supported on headless servers for ft_qualitycheck
• 3182 - check averaging and keeptrials in freqanalysis+freqdescriptives
• 3183 - cfg.outputfile saves default variable names that are difficult to guess
• 3184 - getdimord fails on pcc output
• 3186 - compat/matlablt2010b is not consistent
• 3187 - matlab version specific behavior of cfg-tracking (cleanup)
• 3188 - ft_connectivityanalysis inconsistent output for powcorr_ortho
• 3190 - ft_sourceparcellate's handling of ft_sourceinterpolate's output for atlases
• 3193 - ft_artifact_eog fltpadding default introduces NaNs that avoid filtering
• 3194 - prepare_mesh_hexahedral uses .pnt instead of .pos
• 3199 - tracker fails because java JVM not available
• 3205 - Expand ft_eletroderealign with the functionality of inward/outward shifting of electrode positions.
• 3208 - visualize electrode to headshape distance with red/blue circle projection onto scalp
• 3209 - ft_surfacerealign does not follow coding standards
• 3211 - ft_sourceinterpolate: failure to reshape funparameter data into cubic shape + retainment of pos
• 3212 - ft_connectivityanalysis with source data (pcc) in input, failure to correctly reshape the output
• 3215 - support method=nan for channelrepair
• 3218 - ft_rejectvisual recalculates metric after each trial when data contains NaNs
• 3219 - ft_rejectartifact with reject='nan' ignores trials that are entirely marked as artifact
• 3220 - ft_componentanalysis doesn't accept NaNs in the data
• 3221 - ft_definetrial: The error message for non-existing cfg.trialfun throws an error itself.
• 3223 - ft_databrowser sets ylim to [NaN NaN] when first trial consists entirely of NaNs
• 3224 - :Size inputs error must be integers: error in non-parametric spectral factorization of partial directed coherence
• 3225 - there are two copies of ft_channelselection
• 3226 - ft_preprocessing gives error "Reference to non-existent field 'checkmaxfilter'."
• 3227 - ft_datatype_source chokes on 'rawtrial' source level data with filters kept
• 3228 - ft_volumesegment: implement dartel as an alternative way for segmentation
• 3230 - Push buttons in ft_anonimizedata don't work
• 3234 - Bug in ft_crossfrequencyanalysis
• 3235 - improve ft_volumereslice
• 3238 - improve support for partial artifact handling using NaNs
• 3240 - Please clarify openmeeg opening web browser behaviour
• 3241 - improve the dashboard batch test scripts and resolve some regression errors
• 3244 - modules should remain stand-alone
• 3253 - Integrate TSSS toolbox and SSS-beamformer in FT
• 3254 - ft_sourceplot does not initialise ft_progress based on cfg.feedback
• 3256 - output of ft_componentanalysis should be timelock+comp when input is timelock
• 3257 - ft_sourceanalysis: MNE with frequency domain data + lambda parameter does not use lambda
• 3259 - ft_headmovement passes empty array to kmeans and crashes
• 3262 - external/fileexchange functions (by extension, FieldTrip?) not considered free software by GNU Octave community
• 3264 - ft_math does not work on raw data structures
• 3267 - ft_redefinetrial incorrectly claims trialinfo cannot be combined
• 3268 - make a consistent interface to the functions that return spherical meshes
• 3269 - OCTAVE: fixname crashes with empty string input
• 3270 - support common filter approach with dics coherence with a refdip
• 3271 - mni-warped sourcemodel .inside contains skull not brain
• 3272 - ft_volumesegment should show tissue volumes
• 3276 - ft_electrodeplacement should not show the "scan" option when a single input is given
• 3277 - speed up ft_statfun_actvsblT
• 3278 - Bug in ft_networkanalysis with parameter 'assortativity'
• 3279 - cfg.selectfeature doesnt work in ft_databrowser
• 3284 - regression tests failing for older MATLAB versions
• 3285 - how to keep information about the montage and/or referencing that is applied to data
• 3287 - revise the implementation of the ft_append functions
• 3291 - pass showcallinfo recursively to lower-level functions
• 3292 - use ft_getopt instead of old "isfield" style
• 3295 - ft_appenddata does not only select the channels present in all data structures anymore
• 3299 - the output of "find" is always positive integers
• 3304 - consolidate the handling of coordsys
• 3305 - ft_channelselection, wrong selection when channel names are mixed with wildcards
• 3313 - make a function for anatomical image homogeneity correction
• 3314 - isequalwithequalnans is not recommended. Use ISEQUALN instead.
• 3316 - add sampling rate information to artifact structures
• 3320 - ft_volumesegment returns too many tissues for spm12 new segment
• 3321 - ft_timelockstatistics functionning different from what is said on the wiki and in the help
• 3323 - HTML elements with ft_warning in command line mode
• 3324 - ft_warning and backtrace
• 3326 - problem with ft_warning
• 3328 - error with new notification system
• 3329 - Can't run ft_defaults; Undefined function 'ft_platform_supports' for input arguments of type 'char'.
• 3330 - Invalid MEX File
• 3336 - get rid of confusing stack trace of ft_errror
• 3337 - implement ft_artifact_nan
• 3338 - ft_redefinetrial returns incorrectly nan-padded data
• 3339 - it would be nice if trialinfo could be a table rather than a numeric array
• 3340 - fiducial clicking is similar to electrode clicking and should become shared code
• 3341 - the cfg.method between the different ft_xxxrealign should become consistent for 'interactive' and 'fiducial'
• 3342 - why does ft_freqbaseline normalize trials using the trial-specific baseline instead of the average baseline?
• 3343 - ft_senstype, and ft_senslabel in particular, do not work reliably on iEEG data
• 3346 - keeptrials in ft_timelockanalysis should not output avg/var/dof
• 3347 - ft_databrowser and ft_rejectvisual should use private/chanscale_common for scaling
• 3349 - Octave fails running ft_defaults due to using non-functional form of ft_warning
• 3352 - MATLAB compatibility with narginchk/nargoutchk
• 3354 - sampleinfo should be updated after using ft_selectdata to make a latency selection on raw or timelocked data.
• 3355 - ft_timelockanalysis redfines begsampl and endsampl
• 3356 - ft_platform_supports breaks with optiom 'html'
• 3362 - ft_math with biosemi64.lay in data changes channel order
• 3364 - ft_warning returns incorrect warning state if you change something
• 3366 - implement REST re-referencing for EEG data
• 3367 - ft_datatype qualifies a mesh structure as 'source+mesh'
• 3371 - OS High Sierra seems to make ft_selectdata (and possibly other functions) get stuck in a loop
• 3372 - ft_scalpcurrentdensity returns error with eeg data
• 3374 - implement neuromag quaternion transformation
• 3376 - nanmean crashes after Windows update
• 3379 - ft_redefinetrial fails on overlapping trials
• 3385 - implement support for GSR/EDA data
• 3387 - ft_fetch_sens does not fetch the tra field
• 3389 - extend ft_qualitycheck for Elekta data
• 3390 - implement an ft_groupqualitycheck function
• 3391 - ft_sourcestatistics documents cfg.roi and cfg.atlas
• 3394 - imotions timestamps are not accurate enough
• 3395 - implement decimation to approximately 1Hz
• 3396 - add columns to read imotions markers from
• 3397 - ft_timelockgrandaverage (and perhaps freq) should give error when no cfg is provided
• 3399 - ft_appenddata does not keep the .fsample field
• 3401 - ft_regressconfound produces p-values between 0 and 2
• 3403 - ft_artifact_threshold should support partial artifacts
• 3406 - durations events imotions not correct
• 3407 - imotion files can have spaces in column name
• 3409 - ft_databrowser does not work
• 3411 - create a template set of meshes for EEG, using the NYhead
• 3412 - imotions2fieldtrip fixtime = 'squash' not robust for missing values
• 3415 - implement conversion between Ledalab and FieldTrip
• 3416 - problem in ft_channelcombination
• 3417 - Crashing during ft_freqstatistics
• 3418 - Crashing during ft_freqstatistics
• 3419 - ft_sourceanalysis with precomputed leadfields spends almost all its time in ft_checkconfig>checksizefun
• 3420 - implement Pearson's correlation in ft_statistics_stats
• 3426 - general cleanup and bookkeeping at the end ft_scalpcurrentdensity
• 3430 - applying ft_appenddata to concatenate epochs from different blocks corrupts data
• 3433 - implement ft_respiration
• 3435 - Syntax error using vol2mesh
• 3437 - ft_selectdata breaks on double latency parameters
• 3442 - Repeated calls to ft_prepare_vol_sens/sb_transfer by functions in the simbio FEM-model pipeline
• 3443 - coherence
• 3444 - ft_topoplotIC data check error
• 3452 - Wrong number of selected trials output in ft_redefinetrial
• 3459 - ft_rejectvisual plots all channels and trials
• 3461 - problem with ft_sourcestatistics when using output of ft_sourcegrandaverage
• 3462 - ft_sourcestatistics fails on output from ft_sourcegrandaverage
• 3463 - ft_sourcestatistics does FDR correction wrong
• 3467 - ft_spike_plot_raster goes not use correct latency
• 3468 - ft_selectdata forgets to select .trial field of spiketrial data, when selecting trials
• 3469 - unclear use of ft_spiketriggeredspectrum_stat
• 3471 - ft_statfun_actvsblT only for freq data?
• 3473 - Extent ft_prepare_mesh to create individualised meshes on the basis of templates and measurements
• 3476 - ft_multiplot_ER/ ft_singleplot_ER linestyle error