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• 1 - read_header slow for ctf_shm
• 2 - megplanar fails on TFR input data
• 3 - incorrect detection of senstype and inconsistent grad.type after megplanar
• 4 - appenddata does not check the consistency of the grads in the input
• 5 - ft_freqdescriptives does not work for defined time and frequency bins
• 6 - add cfg.inputfile and cfg.outputfile to all fieldtrip functions
• 7 - inconsitent absmax and maxabs for the scaling
• 8 - clusteranalysis avgoverchan
• 9 - devide by zero in timelock analysis
• 10 - ICA on eeg-data gives complex data
• 11 - ICA gives complex results
• 12 - ICA gives complex results
• 18 - bug in PSI calculation in connectivityanalysis
• 19 - the length of a vector is sometimes used, whereas numel is more robust (before/after vectorization)
• 20 - the help documentation in ft_preprocessing does not follow the guidelines
• 21 - select channels/components (as artifacts) in databrowser
• 22 - connectivityanalysis channelcmb specification
• 23 - error in clusterplot
• 24 - wiki does not list all topoplots in the search result
• 25 - struct2single and struct2double are missing
• 26 - implement cfg.precision for all functions
• 29 - fix subspace projection in beamformer_dics and beamformer_lcmv
• 31 - cfg.zlim in clusterplot does not work
• 32 - topoplotTFR plotting
• 33 - Error in ft_timelockstatistics
• 35 - channel selection in ft_connectivityanalysis
• 36 - ft_channelcombination should check for auto-combinations in the input...
• 37 - ft_connectivityanalysis crashes when input is powandcsd and channelcmb = {'all' 'all'}
• 39 - bug in selectdata:
• 40 - Bug in topoplotER with highlight channel
• 41 - matlab 7.04 from windows platform cannot read keyval
• 42 - maxNumCompThreads not available on all matlab versions
• 43 - small bug using ft_topoplotER with combined EEG+MEG
• 44 - this is a bug for testing bugzilla
• 45 - yet another bug for testing
• 46 - ft_connectivityanalysis coh/psi bug
• 47 - clusterstat emty neighbourhood
• 48 - warning off should always revert to previous warning state
• 49 - ft_topoplotIC interactive
• 50 - databrowser cannot deal with overlapping trials
• 51 - bug in for-loop for plotting electrode numbers in ft_topoplotER
• 52 - old reading functions should be moved to compat folder
• 54 - separate conversions and fixes from checkdata
• 55 - speed up read_event for realtime reading from CTF shm
• 56 - test the email list
• 57 - the fieldtrip logo should be available on the wiki
• 58 - another test bug
• 60 - Error in clusterstat with avgoverchan = 'yes'
• 61 - this is a test bug
• 62 - spm_brainwarp is missing from fieldtrip/external/spm2
• 63 - forward function calls public function warp_apply
• 64 - fileio module function calls public function fetch_data
• 65 - cfg.headerformat and dataformat should be supported in all ft main functions that read datathat
• 66 - convert_units and estimate_units are missing
• 67 - convert_units and estimate_units are missing
• 68 - double presence in svn, both file and external
• 69 - publix/sourcerestyle and public/private/fixsource are replications
• 70 - rank-reduction of leadfield is not supported for openmeeg
• 71 - Bug in ft_freqstatistics
• 72 - missing ft_ prefix to filetype calls in read_neuralynx_ds.m
• 73 - there is a number of functions that calls read_header without passing the user-specified headerformat along
• 74 - inconsistent use of cfg.eventfile and cfg.event
• 76 - unable to read neuralynx nev
• 77 - modules on ftp are not up to date and e.g forwinv not split
• 78 - Toolbox for Chieti data not available
• 79 - ft_redefinetrial with overlapping trials (e.g. after ft_appenddata)
• 80 - LFP dataset with tsq extension cannot be read
• 81 - missing private functions in fieldtrip/inverse
• 82 - volumewrite_spm should go into fileio
• 83 - flipped volume in ft_volumesegment
• 84 - keep is both a var and function name
• 85 - "read_zebris.m" not found in "fileio/private"
• 86 - topoplotER cfg,interplimits = 'electrodes' does not plot outside of head
• 87 - Error in load ASA electrode-layout
• 89 - use bwlabeln from spm8 as alternative to image processing toolbox
• 90 - exclude external/xxx from fieldtrip-lite on ftp server
• 91 - include afni in fieldtrip/external
• 92 - problem reading *.mnc file
• 93 - duplicate ft_plot_topo and plot_topo
• 94 - cfg.outputfile is incompatible with cfg.trackconfig=cleanup
• 95 - merging ft_default.trackconfig and cfg.trackconfig fails
• 96 - ft_prepare_leadfield does nothing
• 97 - if the user specifies cfg.trials=[] this should result in no trials being processed. Now all trials are processed
• 98 - version tracking in high level ft-functions is backward compatible to pre matlab 6.5
• 99 - bug in redefine_trial
• 100 - Conversion error in ft_sourcestatistics
• 101 - argument time undefined in ft_spiketriggeredspectrum
• 102 - cfg.inputfile for ft_prepare_bemmodel with 3 input options
• 103 - with addition of optional cfg.inputfile ylim error
• 104 - topoplotTFR cannot correctly refer to topoplotER with cfg.inputfile
• 105 - Bug in ft_prepare_mesh breaks SPM8, please fix urgently
• 106 - trl in checkdata
• 108 - reading in of ctf-header with headerformat ctf_ds outputs a lot of stuff to the screen, making it slow
• 109 - compilation problems because inet_ntop is missing on windows
• 110 - tcpserver thread cannot be stopped on windows
• 111 - discover thread does not want to start when compiled on matlab2009+msvc2008
• 112 - missing figures megrealign
• 113 - missing figures dipole fit
• 114 - Symmetric dipoles example scripts need updates and illustration
• 115 - ft_prepare_mesh not robust in dealing with inputfile
• 116 - Feature that was used by SPM disappeared
• 119 - plotting functions renamed without fixing the ft_ prefixes in the code
• 120 - pre-allocate mne
• 121 - selectdata with tf-data as input with avgoverfreq for a given foilim gives in the output xxx.freq which is not the average of the requested range
• 122 - ft_rejectartifact doesn't work with data in input when calling artifact_xxx
• 123 - statfun_depsamplesT and statfun_actvsbslT cannot manage nans
• 125 - bug related to renaming of rt_* files
• 126 - High-pass filter explodes for no visible reason
• 127 - error using flag for improved freqanalysis
• 128 - options for overlapping trials?
• 129 - non prefixed ft_xxx functions on wiki
• 130 - ensure robust behaviour for freqanalysis when user specifies both cfg.channel and cfg.channelcmb
• 131 - Incorporate Gareth Barnes's fix to make single shell model unit independent
• 133 - ft_connectivityanalysis averaging trials bug
• 134 - ft_spiketriggeredspectrum is broken due to new specest_nanfft
• 135 - allowuser not updated
• 136 - the peer should announce that the tcpserver is NOT running
• 137 - implement udpserver
• 138 - loadvar and savevar shoudl default to a meaningful variable name and not to 'data'
• 139 - smartcpu is triggered simultaneously on multiple slaves that share a linux node
• 140 - busy peerslave should announce the memreq of the job instead of the memavail
• 141 - there should be a mechanism for logging the output of the command-line peerslaves
• 142 - peer should announce timavail=0 for zombie and master
• 143 - rename the rda2ft directory to brainamp
• 144 - peer slaves seem to switch to zombie while the master is sending a job
• 146 - cmd line peerslave should use syslog() for output, instead of fprintf
• 147 - improve help in functions by linking to wiki documentation
• 148 - display error on headless slaves
• 149 - there is no way to cancel jobs that are submitted but not yet completed
• 150 - create a consistent implementation of the timers and timeout options
• 151 - cmd-line peerslave PANICs too easily
• 152 - pass global variables to peerslave
• 153 - implement refuseuser, refusehost, refusegroup
• 154 - add a description field in the host package
• 155 - ft_read_data returns data in int32 format
• 157 - ft_resampledata deletes cfg.trl
• 158 - improve scheduling in peerfeval
• 159 - wrong peerlist
• 160 - Bug in LCMV beamformer
• 162 - fallback to cellfun if there are no slaves
• 163 - using sleep in a thread causes the whole process to sleep
• 164 - peercellfun sends private directories in path, slave gives warning
• 165 - random number generator initializes to the same value on every matlab startup
• 166 - fractional time in seconds is rounded off incorrectly
• 168 - ft_ prefixes are missing in the code (all realtime functions)
• 169 - path info not handled properly
• 170 - use other toolbox license check
• 171 - unknown path during peerexec
• 172 - trialfun_general crashes with cfg.trialdef.eventtype='gui'
• 173 - nice level
• 174 - implement EDF and GDF format in ft_write_data
• 175 - mex files missing for read_16bit
• 176 - peercellfun for sourceanalysis
• 178 - document cfg.inputfile and cfg.outputfile
• 179 - plotting problem with connectivityresults
• 180 - make ft_multiplotXXX and ft_topoplotXXX robust against subset of all channels in input, in case of connectivity data
• 181 - unknown method in ft_electroderealign
• 182 - ft_rejectcomponent cannot apply projection on grad.tra if nargin==2
• 183 - include job number in rethrown error inside peerget
• 184 - FIXME on wiki: tutorial » eventrelatedstatistics
• 185 - FIXME on wiki: tutorial » plotting
• 186 - FIXME on wiki: tutorial » fourier
• 187 - FIXME on wiki: tutorial » headmodel
• 188 - FIXME on wiki: tutorial » realtime
• 189 - FIXME on wiki: tutorial » artifacts
• 190 - FIXME on wiki: tutorial » automatic_artifact_rejection
• 191 - FIXME on wiki: tutorial » preprocessing
• 192 - FIXME on wiki: tutorial » coherence
• 193 - deprecate cfg.sourceunits and cfg.mriunits
• 194 - no filetype compatibility-function in compat-folder
• 196 - external/afni: isrow is a builtin in Matlab R2010b
• 197 - check which functions need to pass on trialinfo and sampleinfo
• 198 - topoplotER/TFR still defaults using dimord when cfg.zparam is given
• 199 - ft_sourceanalysis with lcmv and precomputed filters and single trial input does not output a pow-field
• 200 - read_sbin_data does not check whether fseek failed
• 201 - Two defaults set for median filter order
• 202 - ft_databrowser: add showing of events in vertical view mode
• 203 - add ft_denoise_pca to the release of fieldtrip
• 204 - ft_freqanalysis crashes when specest implementation is used
• 205 - brain surface in BEM eeg should be called "inside skull"
• 206 - ensure consistent use ouf cfg.previous
• 207 - use tic and toc with an explicit timer name in sourceanalysis
• 208 - ft_ prefix inverse module
• 209 - volumerealign does not output the cfg that was used in the output mri
• 210 - ft_plot_slice and ft_plot_ortho should be written, probably also ft_plot_montage
• 211 - add new spike functions to fieldtrip main trunk
• 212 - reference documentation should contain statfuns
• 213 - reference documentation is inconsistent with ft_ prefixes in public
• 214 - the fieldtrip/private/triplot function is deprecated and should be replaced by ft_plot_mesh
• 215 - freqanalysis depends on the matlab function window, from the signal processing toolbox
• 216 - to do: develop ft_qualitycheck
• 217 - labelcmb2indx should be a private function
• 218 - add matlab version to output cfg.version
• 219 - change syslog output to avoid triggering hobbit/bb
• 222 - different methods are used for triangular mesh decimation
• 225 - what's the effect of slow drifts in my data on my spectral decomposition?
• 227 - grids containing leadfields should contain a label to make the interpretation of the leadfield less ambiguous
• 228 - preprocessing option cfg.blc should be renamed
• 229 - ft_selectdata keyval 'rpt', [...] sorts the requested trials with fourier-input
• 230 - ft_singleplotTFR doesnt handle chansel correctly with cohspctrm data
• 231 - offset2time does not exist on the standard path
• 232 - matlab71 does not have mwSize, buffer won't compile
• 233 - compilation of mex files does not work on matlab71
• 234 - conditional defines in Makefile not allowed on older RedHat version
• 235 - bsxfun is not supported on matlab71
• 236 - ctf acquisition cannot keep up with 407 channels at 600 Hz
• 237 - ft_selectdata cannot handle subj_chan_freq_time
• 238 - ft_plot_mesh should support plotting of colors that are dependent on the data
• 239 - ft_plot_slice default location of [0 0 0] fails
• 240 - interactive topo/single plotting does not work
• 241 - wiki changelog should also show which svn version the change is related to
• 242 - consistent binary executables
• 243 - ft_headmodel_halfspace should be implemented for EEG
• 244 - ft_headmodel_singleshell should be implemented
• 245 - the forward module should be documented
• 246 - svn server does not send the updates to twitter
• 248 - add mini-spm8 version to fieldtrip/external
• 249 - problem in local sphere handling
• 250 - plot_matrix with saturation as maskstyle gives 'hidden' gray areas
• 251 - documentation has to be anonimized
• 252 - checkconfig should be ft prefixed
• 253 - missing function in ft_connectivity_granger
• 254 - call to checkdata in functions like topoplotER/TFR should be based on dimord
• 255 - topoplotER does not accept 1 dimensional data
• 256 - ft_clusterplot cannot plot TFR clusters
• 258 - improve support for plexon nex files
• 259 - the compilation procedure should be documented
• 260 - make realtime table complete w.r.t. bci2000 alternatives
• 261 - update the status of "work in progress" mentions
• 262 - consistent naming for tmsi
• 264 - the neuromag realtime interface needs to be documented
• 266 - ModEEG cannot read from Bluetooth
• 267 - need to supply neighbours in timelockedstatistics
• 268 - remove peer from list in case open_tcp_connection error
• 269 - problem in printing job information
• 270 - add mex files and other code for controlling vnc server
• 271 - the use of matlabversion fails for 2010a and b because they are represented as 7.10 and 7.11
• 272 - inconsistent data handling inside multiplotER w.r.t. cfg.inputfile
• 273 - add support for channel-selection in multiplotTFR
• 274 - add support for channel-selection in topoplotER/TFR
• 275 - timallow/timreq have to be made consistent on master and slave
• 276 - add support for channel-selection to multiplotCC
• 277 - peercellfun resubmission should be improved
• 278 - implement MaxBusy option in peercellfun
• 279 - ft_ prefixes missing from the preproc documentation
• 280 - ft_ prefixes missing from the preproc documentation
• 281 - new implementation of freqanalysis throws errors if ntrials = 1
• 282 - make specest development documentation on wiki conform to the other sections
• 283 - add file-externals for specest_hilbert and others
• 284 - make implementation for specest_convol (previously tfr)
• 285 - make implementation for specest_wavelet (previously wltconvol)
• 286 - make implementation for specest_hilbert
• 287 - update FAQs on wiki for all specest_functions/methods
• 288 - dokuwiki software needs to be updated
• 289 - front page: rss feed for maillist is not available on mailman
• 290 - peercellfun error: unknown function keyvalcheck
• 291 - ft_multiplotXXX, interactive, plots only subset of electrodes for the topoplot
• 292 - ft_freqanalysis does not work with variable length trials and method = 'mtmfft'
• 293 - source statistics on timeseries (source.mom) does not work
• 294 - there are idle slaves with timavail=0
• 295 - resubmitted jobs should be postponed, i.e. first submit all jobs once
• 296 - enginetimeout and zombietimeout should be configurable on the command line
• 297 - warning takes sprintf-like input directly
• 298 - create mex file implementation of keyval
• 299 - add persistent input variable checking to peer/private/getglobal
• 301 - ensure that the mex compile scripts are consistent throughout
• 302 - sourceanalysis fails due to ft_prepare_leadfield throwing away the data
• 303 - switching from zombie to ilde slave should be delayed, e.g. 5 minutes
• 304 - the user should be allowed to specify the variance of timreq
• 305 - trunk/ft_freqanalysis_mtmconvol/mtmfft still exists, including their compats
• 306 - too many resubmissions with small nr of collected jobs
• 307 - rename fieldtrip/public into fieldtrip/utilities
• 308 - get rid of realtime/utilities
• 309 - fail to submit a job
• 310 - replace all calls to preproc by calls to ft_preprocessing, merge preproc with ft_preprocessing again
• 311 - throw a warning in all compat/*.m un-prefixed version to encourage users to start using ft_*
• 312 - statistics_* should be ft-prefixed
• 313 - add forward model computation for FNS FEM solver
• 314 - clarify that wiki entries in 'Development' are 'in progress' or even obsolete
• 315 - fieldtrip/private/preproc() should be replaced by ft_preprocessing where possible
• 316 - the public functions should be ft_ prefixed
• 317 - hasyokogawa should be merged with ft_hastoolbox
• 318 - make list of functions for MNE integration
• 319 - de-mean spike snippet data prior to fft
• 320 - ft_spike_sub_crossx.mexmaci should not be in main directory
• 321 - the spike plotting functions should be renamed ft_spikeplot_xxx for consistency with the other plotting functions
• 322 - plexon nex with different sampling rate are incorrectly read
• 323 - read_plexon_nex incorrect for strobed channel with triggers
• 326 - jobs result in "resubmitting because engine takes too much time to start"
• 327 - engines are not efficiently reused
• 328 - ft_timelockgrandaverage should either output an average or individual data
• 329 - test for the new email address
• 330 - mintimreq should be user specified
• 331 - smartcpu should switch off the "smallest" peerslave first
• 332 - the sluggishness in the peerslave smartxxx estimates has to be reimplemented
• 333 - smartcpu switching is inconsistent
• 334 - specest_mtmconvol shifts time-bins 1 bin to the right, it shouldn't
• 335 - warning backtrace in peercellfun not functional
• 336 - add explicit checks for non-used cfg options in ft_freqanalysis
• 337 - implement padding for specest_hilbert
• 338 - ft_topoplotER is broken after the last change allowing for channel selection
• 339 - timelock data structure should not contain fsample
• 340 - dipole data structure should be described
• 341 - multivariate documentation should be made consistent
• 342 - ft_voltype documentation should contain a list of types
• 344 - ensure consistent handling of balancing throughout the code
• 346 - statfun_xxx documentation should include explanation that ft_xxstatistics should be called
• 347 - mailing list archive only contains mails starting from december 2010
• 349 - don't understand a few lines in ft_volumerealign
• 350 - flipdim problems in beamformer tutorial need to be fixed
• 351 - exercises should be reformatted
• 352 - after switching the warning off, it should be switched on again
• 353 - ft_sourcegrandaverage should work with source datatypes only
• 354 - noise-covariance estimation for source-analysis with minimum-norm estimate
• 355 - development: new functions for creating cortical mesh (using FreeSurfer)
• 356 - development: creating cortical mesh (using FreeSurfer) works only on .mri data
• 357 - make an exercise note in the wiki
• 358 - make http redirects for tutorial -> documentation/tutorial
• 359 - update the module figures with th eboxes, ask Stephen for colors
• 360 - fix the umask problem with the public peerslaves
• 361 - prepare_dipole_grid should be renamed into ft_prepare_sourcespace
• 362 - peer2peer: not starting the engine of one the peerslaves causes peercellfun to given an error when using stoponerror = false
• 363 - Johanna does not have her own bug list at the bottom
• 364 - tutorial/eventrelatedaveraging matlab data missing from ftp server
• 365 - testdata/mri directory does not contain any files
• 366 - pos2dim3d behaves as if it is pos2dimNd
• 367 - megrealign example does not work
• 368 - freqanalysis_old always throws an error requesting to call it directly
• 369 - No horizontal scaling possibility in ft_databrowser on noncontinuous data
• 370 - private/prepare_time_freq_data calls fixdimord
• 371 - check whether keepoutside can be removed from ft_checkdata
• 372 - ft_databrowser shortcut ctrl+[num] errors when no artifacts are defined
• 373 - new function related to source space: ft_reducepatch
• 374 - Plotting does not allow selection on certain frequency bands or time windows only
• 375 - tutorial data directories on ftp server should be made consistent with tutorials
• 376 - documentation on ft_dipolesimulation
• 377 - topoplotER expects .label field instead of .topolabel when called by topoplotIC
• 378 - rename killswitch into watchdog
• 380 - implement ztransform/standardize in rejectvisual
• 381 - ft_write_volume should support nifti
• 382 - peerslave syslog output is inconcistent in case of error (job number seems to increment)
• 383 - selecting a subset of trials from source data (pcc mom) does not work
• 384 - unpredictable crashese during peer computing
• 385 - make new website
• 386 - reimplement source2sparse and source2full for the new source representation
• 387 - broken link to walkthrough.pdf
• 388 - Make Getting Started with .bdf dataformat (from CUNY)
• 389 - add Facebook group + integrate on Wiki
• 390 - change fontsize for code text on wiki to same as main text
• 391 - add TOC, enabled per page
• 392 - enable rotating photo's for news item (e.g. integrated with FB)
• 393 - implement a warningonce function
• 394 - all faqs need a 'faq' tag
• 396 - make wiki pages nicely exportable to pdf
• 397 - move private/prepare_dipole_grid to ft_prepare_sourcemodel in main directory
• 398 - the function isstr is still being used, although it is deprecated by matlab
• 401 - update publications list on wiki
• 402 - too many warnings on sampleinfo field when converting ERF into raw data structure with 1 trial
• 403 - ft_specest_wavelet throws many warnings
• 404 - output to screen by specest functions should be made optional
• 406 - fieldtrip course tuebingen - scaling during mtm 'sine'
• 407 - provide hyperlinks between tutorials
• 408 - ft_prepare_vol_sens assumes the existence of elec.tra which is usually not true
• 409 - ft_compute_leadfield crashes without vol.skin_surface field for bemcp BEM
• 410 - read_eep_cnp does not work on Linux machines (Donders mentat)
• 411 - bugzilla repaired
• 412 - correcttail option in montecarlo has incorrect default
• 413 - add eeglab2fieldtrip to the fieldtrip/external/eeglab directory
• 415 - ft_checkcoordsys
• 416 - search results on wiki often overlap due to long page names
• 417 - ft_prepare_sens_vol does not work for EEG
• 418 - ft_prepare_leadfield: variable "grid" is not initialized
• 419 - singleplotTFR is not robust
• 420 - please address the issues below
• 421 - ft_preproc_bandstopfilter uses range() from the stats-toolbox
• 422 - the watchdog should also allow for monitoring the memory usage
• 423 - wiki software needs to be updated
• 425 - using trackconfig = 'on' does not work robustly
• 426 - inconsistent output of statistics_montecarlo with correcttail='prob'
• 427 - color labels of the lines don't display correctly when using multiplotER with multiple inputs
• 428 - ft_multiplotER is very slow
• 429 - ft_electroderealign fails with cfg.method = interactive
• 430 - compat/stats and compat/signal should go
• 431 - ft_electrorealign should call the plotting function from the plotting module
• 432 - statfun_correlationPearson should be implemented
• 433 - improve search option on mailing list
• 434 - ft_componentbrowser uses a dirty trick for topoplotting that is not supported in ft_plot_topo
• 435 - ft_componentbrowser uses wrong settings for plotting topoplots
• 436 - ft_rejectvisual makes inefficient (or no?) use of ft_checkdata
• 437 - discuss the online EEGLAB course
• 438 - ft_checkdata should get siblings like ft_checkraw, ft_checkfreq, ft_checksource, ft_checkvolume
• 447 - output preprocessing .trial if input is .avg
• 448 - font colour too light in search results on wiki
• 449 - improve the release procedure on the ftp server to avoid many zip files that are the same
• 450 - the data stored in /home/common/matlab/fieldtrip/data/tutorial needs to be updated
• 451 - ft_multiplotXXX and ft_singleplotXXX should be cleaned up
• 452 - cpompat functions are being called by trialfun_xxx
• 453 - the faqs on artifacts should be indentified and tagged
• 454 - figures on visual artifact tutorial should be smaller
• 455 - determine whether ft_componentbrowser can be removed
• 456 - Add EGI MFF data format
• 458 - fixdimord cannot handle dimord voxel
• 459 - potential error in the use of preprocessing
• 460 - fclose(fid) missing in read_micromed_trc.m
• 461 - documentation points to pdf
• 462 - there's mixed usage of the nanXXX and nan_XXX throughout the code
• 463 - ensure that all linked wiki pages exist
• 464 - ft_freqbaseline looks outdated and inefficiently implemented
• 465 - problem with labels in topoplotIC after pca
• 466 - check dependencies for matlab datasource functions
• 468 - statistics_montecarlo / statfun_indepsamplesF behaves strangely...
• 469 - executables for dipoli
• 470 - some junk in the multivariate directory needs to be removed
• 471 - fix the inside detection for a dipole grid in case of a halfspace model
• 473 - fix the svn:externals for peer and openmeeg
• 474 - too many file externals in fieldtrip/private
• 475 - ft_inside_vol should be used instead of find_inside_vol
• 476 - reference doc on wiki doesnt fit
• 477 - implement an ft_examplefunction function
• 478 - implement an svn hook to replace the svn externals
• 481 - the tutorial datasets have to be anonimized
• 482 - integrate FNS FEM solver
• 483 - Re: [FieldTrip] FT doesn't close .fif files
• 484 - integrate SIMBIO FEM solver
• 486 - implement getopt, setopt and checkopt fiunctions
• 487 - warning message is too long
• 488 - planarchannelset, and therefore ft_combineplanar, uses senstype instead of ft_senstype
• 489 - savevar (i.e. cfg.outputfile) should use an uncompressed format if the variable is small
• 490 - google code stuck at r2780
• 491 - ft_channelrepair - mismatch in fixed channels
• 492 - consider adding more social network features to the wiki
• 493 - google search results for "fieldtrip" are much worse than they used to be
• 495 - test bug
• 497 - ft_databrowser uses wrong settings for plotting topoplots
• 499 - ft_databrowser does not support variable-length trials
• 500 - fixtrialdef throws an inconsistency warning if data has been resampled
• 501 - implement a movieplot function for MNE source reconstructions
• 502 - replace keyval by ft_getopt
• 503 - compile some of the missing mex files on win32 and win64
• 505 - p waarden > 1 met freqstatistics
• 509 - databrowser does not plot artifacts (and events) when drawing components
• 511 - warning using ft_write_volume
• 512 - ft_sourceplot can't plot mri
• 513 - missing figures on wiki (development section)
• 514 - Beamformer tutorial pictures do not coincide with current code
• 515 - beamform tutorial plots do not match results from current pipeline
• 516 - mtmfft returns a cfg.foi
• 517 - Subject0x.ds datasets are not completely anonymous
• 518 - ft_databrowser fails when cfg.dataset is specified and no data argument is provided
• 519 - databrowser expects a topo from the input, which fails when reading from file
• 520 - Neighbourselection crashes when providing a layout and no neighbourdist
• 521 - channel selection in ft_multiplotTFR
• 522 - layout of exercise 3 in the TFR tutorial is ugly
• 523 - strange problems in a sourceanalysis pipeline
• 524 - check transformation matrices before and after writing and reading freesurfer MRIs
• 525 - ft_databrowser issues with scaling and viewmode when data is read from disk
• 526 - ft_freqdescriptive sets hasrpt if dimord contains 'subj', but errors later when no dimord does not contain 'rpt'
• 527 - ft_selectdata does not support dimord 'subj'
• 528 - ft_fetch_data does not correctly check whether requested data falls within 1 trial
• 529 - ft_preprocessing should support padding for continuous data in-memory
• 530 - check description of design matrix conditional on required statfun
• 531 - ft_freqanalysis does not work properly with mtmconvol and 'keeprpt' = 1
• 532 - implement a ft_crossfreqanalysis function
• 533 - implement RetryOnError
• 534 - reference doc for the peer module does not appear on the wiki
• 538 - ft_freqstatistics errors on connectivity data made from fourier data with dimord chan_chan
• 539 - svn sync to sourceforge fails
• 540 - wavelet convolution in ft_freqanalysis flips phase of signal
• 541 - try-catch construction incompatibe with matlab74
• 543 - implement coordinate transformation for itab system
• 544 - implement cfg.downsample for ft_volumesegment
• 545 - ft_selectdata should support toilim for source input
• 546 - matlab startup error
• 548 - incorrect timreq update
• 549 - ft_volumesegment crashes on ft_getopt
• 550 - ft_volumesegment crashes on SPM, while segmenting its own template
• 551 - add another google search button
• 552 - ft_volumesegment gives a segmented structure with 3X1 dim
• 553 - design test scripts for FNS and SIMBIO FEM solvers
• 554 - ft_sourceanalysis (method:mne)
• 555 - ft_plot_mesh on reference channels
• 556 - implement ft_prepare_headmodel
• 557 - ft_volumereslice on 'ctf' aligned mri data
• 558 - ft_sourceanalysis does not seem to handle cfg.lambda
• 559 - figuring out how to work with Yokagawa, especially co-registration
• 561 - not able to plot (topo/singleTFR nonlinear (time/freq) axis
• 562 - when recommending a page with FB, a stupid firefox thumbnail appears (instead of a FT)
• 563 - ft_sourcedescriptives gives error because of missing dim in output of ft_sourceanalysis
• 564 - something goes wrong with reading tutorial dataset, any recent changes in fileio?
• 565 - make new banners (NY, st. louis?)
• 566 - make a poll on the wiki to determine the most-used matlab versions
• 567 - beamformer tutorial, left/right flipped?
• 568 - ft_volumesegment now outputs wrong dimensions of dim field
• 569 - should ft_plot_vol use cfg instead of key-value pairs?
• 570 - the function 'channelposition' cannot handle some datatypes properly
• 571 - peer resulting in matlab crash
• 572 - ft_megplanar outputs old ICA channel labels (and too many channels)
• 573 - improve event handling for neuroscan cnt and eeg formats
• 574 - example script uses the deprecated prepare_dipole_grid function
• 575 - neighbourselection now has option 'method' but this crashes when you call it from the stats functions
• 576 - timelock_neuromag122 seems to contain data from a 306-channel system
• 577 - Bug in the identification of channels to use for repairing a bad channel
• 578 - Incorrect load from cnt neuroscan file when with segmentation
• 580 - ft_filetype.m contains references to the nonexistent and mysterious "F.C. Donders Centre"
• 581 - peercellfun should only print "updated timreq/memreq" immediately before submitting a new job
• 582 - 'q' in ft_databrowser doesnt work when in 'component' viewmode/input
• 583 - ft_selectdata probably has difficulties if nrpt/nsubj is equal to any of the other dimlengths.
• 584 - Hilbert transform with output 'angle' gives output < -pi and > pi
• 585 - invalid MEX file error in clusterstat
• 586 - Problem with ft_selectdata
• 587 - ft_volumesegment accepts priors only for humans, default SPM options are rigid
• 588 - strfind error
• 589 - freqanalysis output doesnt contain cfg.previous anymore
• 590 - wltconvol gives weird results in lower frequencies
• 591 - ft_neighbourselection should not be called by other FT functions
• 592 - tutorials have settings/references using old-style freqanalysis
• 593 - ft_databrowser crashes on data which was obtained with ft_appenddata
• 594 - yokogawa trigger channels are not correctly detected
• 595 - reading a few channel from an sqd file is very slow and takes too much memory
• 596 - plotting of events in ft_databrowser is broken
• 597 - channel labels in meg160 software user-interface start with "000" and not with "001"
• 598 - the description on http://fieldtrip.fcdonders.nl/external needs and update
• 599 - problems with lfp test data on /home/common
• 601 - no peerslaves found
• 603 - ft_qualitycheck cronjob should save matfiles to Odin
• 604 - introduction tutorial should follow the documentation guidelines
• 605 - analysis protocols tutorial should be merged with the introduction tutorial
• 606 - scripting tutorial should follow the documentation guidelines
• 607 - preprocessing tutorial has to be restructured
• 608 - eventrelatedaveraging should follow the documentation guidelines
• 609 - timefrequencyanalysis tutorial should follow the documentation guidelines
• 610 - coherence tutorial should follow the documentation guidelines
• 611 - beamformer tutorial should follow the documentation guidelines
• 612 - headmodel tutorial should follow the documentation guidelines
• 613 - eventrelatedstatistics tutorial should follow the documentation guidelines
• 614 - cluster_permutation_timelock tutorial should follow the documentation guidelines
• 615 - cluster_permutation_freq tutorial should follow the documentation guidelines
• 617 - plotting tutorial should follow the documentation guidelines
• 618 - layout tutorial should follow the documentation guidelines
• 619 - easycapXX-avg layouts have to be improved
• 620 - realtime tutorial should follow the documentation guidelines
• 621 - creating a brainmask in MNE pipeline is not in FT style
• 623 - ft_pimplot not in the release anymore?
• 624 - ft_timelockanalysis doesn't work with cfg.vartrllength=1 anymore
• 625 - cfg.statistic='ttest' not exist in prepare_design.m
• 626 - ft_channelselection
• 627 - ft_sourceplot does not plot anatomy & fun correctly
• 628 - wiki pages suddenly appear blank
• 629 - implementation problems with epoched egi_mff format
• 630 - ft_databrowser redraws everything when marking new artifacts
• 631 - reorganize the fieldtrip/template directory
• 632 - writing test file for SimBio
• 633 - write test file for FNS
• 634 - add spherical spline interpolation to ft_channelrepair
• 635 - ft_channelrepair should use cfg.neighbours instead of cfg.neighbourdist
• 636 - document how to make the wiki banners
• 637 - ft_appenddata should be extended to also support appending timelock, freq and source data
• 638 - add missing people to fieldtrip-bugs mailing list
• 639 - fieldtrip-lite should exclude the templates and the externals
• 640 - make trialfun, statfun and browsefun behave consistently
• 641 - hastrialdef should be renamed into hassampleinfo in ft_checkdata
• 642 - ft_channelselection cannot handle channelexclusion of channels denoted with a *
• 643 - maintaining the multicast list can be made conditional on the status
• 645 - Increase the speed of reading in xml files, Anyone an idea how to??
• 647 - create a fieldtrip/warp toolbox
• 648 - ft_uilayout and layoutgui should perhaps be merged
• 649 - ft_sourceplot option cfg.inputcoordsys should be deprecated
• 650 - user feedback in ft_sourceplot needs to be cleaned up
• 651 - the prepare_design function should be deprecated/removed
• 652 - use of trialfun_general should be made explicit somewhere
• 653 - trialfun_trial should be enhanced to also return the trigger code (if possible)
• 654 - update functions using legacy trl matrix to use sampleinfo (and offset) instead
• 656 - ft_timelockanalysis: output should have a dimord consistent with its fields
• 658 - Neuromag-306 data incompatible with ft_rejectvisual
• 659 - add tic/toc to all functions and include in output cfg
• 661 - ft_chantype needs to be updated to use the channel labels
• 662 - ft_megplanar should be made consistent with ft_neighbourselection
• 663 - ft_prepare_layout fails for yokogawa64_planar
• 664 - private/sensortype.m should be deprecated
• 666 - CTF system fault writing data?
• 667 - error in artifact detection tutorial
• 668 - ft_artifact_zvalue causes a steadily increasing memory use
• 669 - Open a new figure only if all possible errors have been checked for
• 670 - ft_channelselection cannot handle all regular 'regular expressions'
• 671 - rotate, scale, translate
• 672 - ft_multiplotTFR should support different scaling for different sensor types
• 673 - output of ft_dipolefitting is incorrect
• 674 - multisphere function not found
• 676 - ft_appenddata should ensure consistent handling of sampleinfo etc when appending over channels
• 677 - SVG figures sometimes fail on wiki
• 678 - volume conductor doesn't look good
• 679 - QuikCap 128 NSL layout
• 680 - bad axes plotting in ft_multiplotER
• 681 - ft_read_vol cannot read from a neuromag fif file
• 682 - MEG64
• 684 - channelposition returns incorrect results on grad-structure in attached file
• 685 - warning_once should be copied into specest/private
• 686 - the input and output units of ft_compute_leadfield should be determined
• 687 - improve help for ft_volumesegment
• 688 - check the literature references for 2005-2007
• 689 - check the literature references for 2008
• 690 - check the literature references for 2009
• 691 - check the literature references for 2010
• 692 - check the literature references for 2011
• 693 - channelposition needs to be made robust.
• 694 - Suggestion to use (Matlab) syntax highlighting in <code>
• 695 - development: improve visualization of MNE source reconstruction results
• 696 - off format writer
• 697 - potential issue with ft_freqstatistics
• 698 - development: code is not in FT style
• 699 - development: group analysis and statistics on MNE source reconstruction
• 700 - new dokuwiki release available: 2011-05-25 "Rincewind".
• 701 - ft_volumesegment skullstrip output is smoothed
• 702 - allow feedback to be turned off in ft_freqanalysis
• 703 - trialfun_general miscalculates trldur if no poststim but prestim is given?
• 704 - WIKI: clicking on banner/FTlogo should link to 'home' page
• 705 - ftFuncTimer is missing in ft_connectivitysimulation
• 706 - ftFuncTimer is also not initialized in ft_mvaranalysis
• 707 - implement a ft_connectivityplot function
• 708 - re-implement ft_timelockstatistics
• 709 - create ft_connectivity_xcorr
• 710 - create faq on the representation of bivariate frequency domain data
• 711 - implement an interface to the graph analysis toolbox by rubinov/sporns/kötter
• 713 - implement support for Windaq data format
• 714 - make a mex implementation of nanmean, nanvar etc
• 715 - ft_sourceanalysis with method = pcc should pass on trialinfo
• 716 - ft_megrealign misbehaves when realigning
• 717 - ft_getopt does not return an output if the input is something else than a cell-array, a struct, or a config object
• 718 - ft_apply_montage of ft_megplanar causes ft_topoplotTFR problems after ft_rejectcomponent
• 719 - MEGrealign misplaces sensor
• 720 - add Vista mesh reader writer to ft_r/w_headshape
• 721 - patch for rejectvisual_summary.m to visually show which trl/chan were removed
• 722 - enable data cursor mode in rejectvisual_summary
• 723 - make ft_connectivityanalysis more robust to deal npsf
• 724 - ft_connectivityplot should take multiple inputs and plot them in 1 figure
• 725 - ft_connectivityplot should work in linearly indexed data
• 726 - issue with addressing default for smoothing in ft_volumesegment
• 727 - misleading help about cfg options in ft_volumesegment causes error
• 728 - change to ft_channelselection in SVN commit 3548 breaks some wildcard functionality
• 729 - ft_checkdata -> fixcsd with 'sparse' -> 'full' flips the directionality with respect to convention
• 730 - ft_singleplotER crashes when called from ft_multiplotER with cfg.matrixside = 'feedforward'
• 731 - read digital trigger on neuromag system
• 732 - csd2transfer crashes on initialising some matrix when sfmethod = 'bivariate' and csd is not positive definite
• 735 - rename cfg.option cohrefchannel into refchannel
• 736 - rename the values in cfg.matrixside (plotting functions)
• 737 - warning on/off should always revert to the previous warning state at the end of the function
• 738 - ft_read_event and ft_read_data have to be made faster
• 739 - ismember is slow and should be replaced (if possible) by any(strcmp(...))
• 740 - representation of pdc and dtf with dimord 'chan_chan' should be consistent with granger
• 741 - cfg.statistic not in statistics_crossvalidate
• 742 - incorrect handling of defaults in ft_freqanalysis
• 743 - using <code matlab> leads to very ugly exported pdf-files
• 744 - cfg.latency should be made forbidden/deprecated in ft_timelockanalysis
• 745 - similar to cfg.trials and cfg.channel, functions should get an option cfg.latency
• 746 - ft_defaults does not add multivariate toolbox
• 747 - cfg.design and design are both possible inputs in stat* functions
• 748 - close buffer cleanly
• 749 - ft_select_data does not plot interactive boxes when a singleplotTFR area is selected
• 750 - ft_selectdata should support toilim for raw data.
• 751 - command line options are not correctly parsed
• 752 - udsserver fails to start on max os x
• 753 - ft_prepare_sourcemodel changes
• 754 - trialfun_general in line 126 behaves strange ...
• 755 - rename coordinates in ft_volumewrite by coordsys
• 756 - watchdog is not properly enabled in peerslave cmdline executable
• 757 - ft_volumesegment smoothes anatomy when creating a scalp mask
• 758 - confusing comment in ft_volumewrite
• 759 - procedure of event-related averaging tutorial does not show the real order how functions are used
• 760 - ft_sourcegrandaverage uses .dim field
• 761 - test the ft_databrowser_new implementation
• 762 - ft_connectivityplot should support multiple input data with different functional parameters
• 763 - low level helper functions for csd2transfer are missing in repository
• 764 - ft_multiplot_CC shouldn't have a default layout
• 765 - singleshell head model should foresee a smoothing function
• 766 - the tutorial documentation of the headmodel needs a good review
• 767 - get uniform definition of segmented compartments
• 768 - peermaster allowhost should not be case sensitive
• 769 - improve answer to faq
• 770 - allow ft_volumerealign to work with arrow-keys
• 771 - ft_read_mri should behave consistent w.r.t. transformation matrix
• 772 - cannot topo- and multiplot neuromag data
• 773 - ft_compute_leadfield: cfg.pos as Nx3 and reducerank='yes' gives wrong results
• 774 - Realtime motion monitoring in MRI fails
• 775 - unclear documentation of ft_dipolesimulation.m
• 776 - examine the plot2svg plugin for matlab
• 777 - volume conductor tutorial figure is incorrectly shifted upwards
• 778 - cfg.megscale cfg.eegscale don't work with ft_databrowser
• 779 - ft_multiplotER : the sensors are out of the schematic head
• 780 - filter instability
• 782 - Bug in ft_connectivityanalysis
• 784 - UI update to ft_rejectartifact
• 785 - ft_volumesegment is giving me an error message
• 786 - ft_componentanalysis fails to output correct mixing matrix when using dss
• 787 - wiki pages exported to pdf do not include svg graphics
• 788 - recompile src/ft_getopt.c on linux 32+64 and windows 32+64
• 789 - peerslave crashes on startup
• 790 - UI improvements to rejectvisual_summary
• 791 - funcolorlim not correctly assigned with default in ft_sourceplot
• 792 - ft_preproc_polyremoval gives round off problems
• 793 - tweet wiki edits
• 794 - ft_preprocessing does not find 'offset' field
• 795 - ft_databrowser (and _new) fail when no cfg is present in data
• 796 - implement support for yokogawa440 system
• 797 - documentation on mex files needs to be updated
• 798 - ft_freqstatistics fails on old input data (reported by Yoni)
• 799 - Bug with specifying channel combinations for Granger causality
• 801 - ft_senslabel does not recognize yokogawa160 again, but instead finds yokogawa440(_old_planar)
• 802 - instantaneous causality is broken
• 803 - nan support in ft_connectivity_corr breaks functionality
• 804 - some MEG channels do not have correct coil positions and orientations
• 805 - yokogawa440 layout should be reconstructed
• 806 - multiplotER with interactive does not open all windows in the same position/size
• 807 - fiducial positions in ctf share are inconsistent with the shape itself
• 808 - ft_transform_geometry does not apply the transformation to an anatomical MRI
• 809 - Suggestion: Let neighbourselection calculate distances for neighbours
• 810 - mtmwelch is not supported adequately
• 811 - implement spm2ft converter function
• 812 - ft_defaults sometimes takes very long to execute
• 813 - routlm, an accessory routine to project electrodes, is not available out of the src folder
• 814 - artifact tutorial (visual) should mention ft_databrowser
• 815 - svg figures on distributed computing tutorial don't show correctly
• 816 - improve the tweets of the svn changes
• 817 - Error when attemping read_sbin_events on a file without events
• 818 - If no layout is given, it could be estimated using ft_senstype(data)
• 819 - ft_getopt.mexw64 depends on MSVC 2010 dll
• 820 - cfg.vol should not be required input to ft_sourceanalysis
• 821 - read_combined_ds (fileio/private) calls read_data, rather than ft_read_data
• 822 - ft_connectivityanalysis seems to fail on powandcsd in input (ft_selectdata issue, I suspect upon averaging/channel subselection)
• 823 - ft_connectivityanalysis / ft_freqdescriptives don't seem to do jackknife anymore
• 824 - add 4D-gradiometer dataset to the test datasets
• 825 - mutexlock in combination with outputfile fails in ft_freqanalysis when ft_checkconfig is strictly removing unused cfg options
• 826 - original svg figures cannot be downloaded on wiki
• 828 - svg figures don't work in internet explorer
• 829 - make nice print stylesheet for wiki pages
• 830 - ft_databrowser vertical rescaling does not work
• 831 - deprecate cfg.xparam/yparam in plotting functions
• 832 - rename cfg.zparam in plotting functions into cfg.parameter
• 834 - ft_checkdata with cmbrepresentation fullfast should lose cumtapcnt and cumsumcnt
• 835 - coherence tutorial should use fourier in freqanalysis, rather than powandcsd
• 836 - ft_componentanalysis crashes with method='fastica' and MEG data in input
• 837 - Create a FAQ about the databrowser
• 838 - ft_selectdata crashes when avgoverfreq on single freq data
• 839 - documentation on manual artifact detection needs to be adjusted
• 841 - use consistent british or american english throughout
• 842 - bugfix for rejectvisual_summary
• 843 - cfg.matrixside seems relevant but not mentioned in documentation
• 844 - if cfg.montage is specified in ft_preprocessing, it is only applied to the data
• 845 - ft_appenddata incorrectly initializes the output sampleinfo always to be empty
• 846 - could we make ft_freqgrandaverage to support 'chan' dimord?
• 847 - cfg.design not in help comments of ft_freqstatistics
• 848 - identify channel function is broken in ft_databrowser
• 849 - convention of 'directionality' in spectral transfer function is swapped wrt the other connectivity metrics
• 850 - ft_checkdata gets confused with mtmconvol input and fourier
• 851 - freqstatistics has a problem with singular dimensions in freq field?
• 852 - freqstatistics has a problem reshaping my data?
• 853 - artifact marking does not work in ft_databrowser butterfly viewmode
• 854 - ft_databrowser does not respond to numpad keys
• 855 - ft_artifact_zvalue should support in-memory data with no cfg.trl specified
• 856 - allow user to specify critical time window for ft_reject_artifact
• 857 - ft_databrowser crashes
• 858 - Problem with megplanar on CTF 275
• 859 - .lay for BrainCap 64ch MR-compatible EEG cap not in templates
• 860 - ft_neighbourplot crashes
• 861 - ft_volumesegment with cfg.write = 'yes' writes the wrong transformation matrix to the files
• 862 - fixsampleinfo does not recreate sampleinfo if trialdefinition is inconsistent
• 863 - megplanar followed immediately by combineplanar does not work
• 864 - megplanar computes a value for all sensor in the neighbourhood structure, independent of whether they are actually in the data
• 865 - ft_appendfreq should not call checkdata with hassampleinfo
• 866 - ft_neighbourselection outputs non-optimal neighbour structure
• 867 - compiled ft_getopt fails on mentat 274
• 868 - ft_neighbourselection miss sensors after ft_rejectcomponent
• 869 - compiled nanXXX fail when using a low matlab version
• 870 - fix text display bug in ft_multiplotER with multiple datasets
• 871 - add axes to summary plot in ft_multiplotTFR
• 872 - implement and test statfun_glm
• 873 - Sine taper doesn't work in ft_specest_mtmconvol
• 874 - clean up your buglist
• 875 - add gray and yellow to colorscheme
• 876 - improve the documentation on handling the artifacts in the data
• 877 - fix layout of automatically generated lists of recommended reading etc
• 878 - give Elli svn access
• 879 - add channel position to the grad structure
• 880 - layout file info on wiki does not specify reference frame for X- and Y-coordinates
• 881 - singleplotTFR fails when the input contains both pow and crsspctrm
• 882 - facilitate the editing and updating of SVG figures on the wiki
• 884 - ft_read_event adds the undefined and nonstandard urevent
• 885 - compiled ft_getopt fails when the input is a config object
• 886 - ft_read_mri requires SPM8 toolbox
• 887 - help of ft_determine_coordsys could be improved
• 888 - ft_freqstatistics requires cfg.neighborhood when dimord = 'freq_time'
• 889 - delete the mex-files for keyval
• 890 - create mat-files for the mostly used acquisition systems to better reflect the features of the channel positions/ outline
• 891 - ensure that the test-directory in /home/common/matlab/fieldtrip/forward/ exists
• 892 - ft_freqstatistics should give meaningful error in case default cfg.parameter is not available
• 893 - freqstatistics fails for fourier input data with a rpttap in the dimord
• 894 - statfun_indepsamplesZcoh requires an undocumented cfg.label
• 895 - the output dimord of ft_freqstatistics should be chancmb in case of a bivariate statistic (e.g. coherence)
• 896 - plotting of coherence statistics witg ft_multiplotTFR fails
• 897 - rename tests directory into "test"
• 898 - ft_databrowser does not draw layout correctly when layout is taken from .mat-file
• 899 - senstype does not recognize eeg datastructure
• 900 - ft_determine_coordsys gives an error when mri.coordsys = 'spm'
• 901 - add related FAQ's and related example scripts to the end of the tutorials
• 902 - organize tags
• 903 - cfg.numcomponent fails most methods in ft_componentanalysis
• 904 - cfg.numcomponent fails for method=dss in ft_componentanalysis
• 906 - ft_senstype does not recognize the type of sensors for some of the data on /home/common
• 907 - test_ft_preprocessing fails to return identical results for .edf and .bdf
• 908 - /home/common/matlab/fieldtrip/data/test/raw/lfp/preproc_neuralynx does not exist
• 909 - test_ft_preprocessing fails on plexon data
• 910 - test_ft_preprocessing fails on 'tdt data
• 911 - add memtic/memtoc to all fieldtrip functions
• 912 - move clever handling of names of balancing structures to ft_apply_montage
• 913 - ft_connectivityanalysis gives inaccurate user feedback when doing npsf with cfg.channelcmbs
• 914 - qsubcellfun should use proper working directory and meaningful job IDs
• 915 - layout units and scaling should be consistent
• 916 - read_eep_cnt does not work under linux 32bit
• 917 - inconsistent and missing versions for ft_getopt mex files
• 918 - compatibility issue with matlab2011a
• 919 - compile getpid.c for different platforms and add to repository in appropriate way
• 920 - ensure walltime is in a format that qsub can understand
• 921 - selecting freq parameter fails in ft_selectdata
• 922 - 2 automatic artifact detection site
• 923 - analysis of connectivity tutorial 2 times
• 924 - ft_denoise_synthetic does not have ft_checkconfig with trackconfig=on
• 925 - ft_freqcomparison documentation is not clear
• 926 - ft_xxxplot functions should be made more consistent with their return value
• 927 - ft_prepare_femmodel should be removed
• 928 - ft_spiketriggeredinterpolation assigns cfg.callinfo at the end, but the variables are not set at the beginning
• 929 - xxx2fieldtrip function user interface should be made more consistent
• 930 - test_ft_preprocessing fails for yokogawa160
• 931 - ft_appendfreq fails when the data does not exactly overlap
• 932 - ft_freqstatistics fails on old input data (again)
• 934 - Matlab does not shutdown properly
• 935 - implement qsublisten function
• 936 - make sure qsubexec's output becomes available in an atomic operation
• 937 - ft_prepare_mesh inconsistencies and restructure suggestion
• 938 - Create a development page about the reorganization of the FWD module
• 939 - determine the status of project http://fieldtrip.fcdonders.nl/development/halfspace
• 940 - confusing *intended* error appears in GdfWriter.h
• 941 - ft_channelrepair doesn't reconstruct channel well
• 942 - ensure consistent structure of the main ft_functions
• 943 - improve user-interface to ft_artifact_zvalue
• 944 - deprecate some old artifact functions
• 945 - non-parametric spectral factorization can be sped up substantially
• 946 - ft_appenddata reportedly fails to concatenate trialinfo and sampleinfo (even when that is possible)
• 947 - ft_neighbourselection help suggests you can use any cfg.layout
• 948 - test_ft_megplanar does not work
• 949 - ft_megplanar fails for method sourceproject
• 950 - ft_megrealign does not properly take balancing into account
• 952 - functions that return cfg should check on nargout
• 953 - the channel type and the physical units should be the output of ft_read_header
• 955 - move source code for vista mex files to fieldtrip/src
• 956 - waittime error
• 957 - ft_volumewrite should not be called in leadfield_fns
• 958 - what happens if simbio is not available or if the computer is a pc?
• 959 - add the compilation instructions for the vgrid binary
• 960 - rename statistics_montecarlo and such into ft_statistics_montecarlo
• 961 - new config option confusion in ft_artifact_ecg
• 962 - remove default cfg.demean = 'yes' in ft_componentanalysis
• 963 - neuromag data units should be reflected in the grad structure and ft_convert_units
• 964 - prepare_mesh_segmentation and cfg.tissue
• 965 - ft_hastoolbox is used for compat, but it does not detect compat correctly
• 966 - minor multiplotER bug with timing code
• 967 - move functionality of instantaneous causality and total interdependence into ft_connectivity_granger
• 968 - loadvar inconsistently throws errors, which are resolved if called again
• 969 - ft_volumerealign interactive gui doesn't show "R" & "L" indicators
• 970 - the option cfg.fixedori does not work for the beamformer_pcc
• 971 - ft_sourcedescriptives does not understand the option 'method' anymore
• 972 - ft_topoplotER is inconsistent w.r.t. xparam
• 973 - check and correct the incongruencies between units names
• 974 - add qstat and qdel to qsubcellfun documentation
• 975 - ft_freqanalysis should support variable number of tapers per trial for cfg.method='mtmfft'
• 976 - round-off issues lead to unexpected behavior of ft_specest_XXX
• 977 - make memreq and timreq required options in qsubcellfun
• 978 - display the job number in case an error is detected in the stderr log output
• 979 - mtmfft: cumtapcnt doesn't support variable number of tapers
• 980 - ft_prepare_vol_sens loses vol.unit along the way
• 981 - ft_headmodelplot doesn't work with a multisphere volume conduction model in the input
• 982 - headsurface and head_surf seem to have largely overlapping functionality
• 983 - Change ft_neighbourselection to ft_prepare_neighbours
• 984 - Update wikipage on new function name for neighbourselection
• 985 - ft_chantype does not recognize headcoil sensors as such
• 986 - write a wrapper for simbio binaries
• 987 - make ft_selectdata test script
• 988 - ft_topoplotER needs a .freq field to function
• 989 - there seems to be a problem in selectdata in that the underlying dimlength does not recognize a .stat field.
• 990 - Incompatibility of new function ft_prepare_neighbours?
• 991 - integrate twitterticker nicely into wiki layout
• 992 - remove dependency of qsubfeval/qsubget on intermediate script files
• 993 - the different coordinate systems should be better documented in headcoordinates.m and the documentation to ft_volumerealign should be improved
• 994 - tweet posts to mailing list
• 995 - ft_topoplotCC should use strcmp instead of strmatch
• 996 - ft_singleplotER and ft_ft_multiplotER do not plot multiple datasets
• 997 - Temporary fix in prepare_mesh_segmentation ruins the triangulation
• 998 - Convert FT tutorials into testing functions
• 999 - sourceinterpolates sets default projectmethod to 'linear' while such a method does not exist
• 1000 - create doodle for social event
• 1001 - ft_plot_headshape redundant?
• 1002 - ft_prepare_headmodel has repeating code
• 1003 - feature: use ft_headmodelplot without grad/elec
• 1004 - XXX2grad functions should convert to new sensor representation directly
• 1005 - parameter in sourceinterpolate is a string by default whereas the function expects a cell-array
• 1006 - sourceanalysis breaks on checkconfig?
• 1007 - no elec.pnt in the new version (03/10/2011) of channelposition.m
• 1008 - change cfg.frequency to cfg.foi in ft_sourceanalysis
• 1009 - ft_plot_topo fails on line 196
• 1010 - layout of subplots in ft_topoplotER
• 1011 - ft_appenddata using the 'new' source representation?
• 1012 - random seeding is incorrect when using the local scheduler in qsubfeval, rand returns the same number
• 1013 - hassampleinfo fails on a timelocked structure with trials
• 1014 - appendtimelock fails if the input contains avg and trial
• 1015 - ft_rejectvisual zvalue button seems not to display a z-value
• 1016 - ft_read_mri fails to return a correct volume structure when not using spm for reading analyze files
• 1017 - ft_volumerealign breaks when you click outside of a plot
• 1018 - ft_artifact_zvalue/clip require a cfg.trl and don't use data.sampleinfo
• 1019 - implement ft_movieplotTFR
• 1020 - read memory error during acquisition
• 1021 - sort out all the appenddata/time/freq/source and ft_selectdata bugs
• 1022 - test_bug228 need to be finalized or deleted
• 1023 - rename headmodel_strip into headmodel_slab
• 1024 - the documented defaults in the ft_specest functions are inconsistent with the implemented defaults
• 1026 - ft_checkconfig>checksizefun error.
• 1027 - Error when running artf rejection with unequal trial lengths
• 1028 - ft_compute_leadfield should use warning_once
• 1029 - fix inconsistent naming of forward solutions
• 1030 - fixsens should not be made conditional on the sens definition
• 1031 - qsubcellfun uniformoutput=1 does not work
• 1033 - implement a consistent way to return help (or an error)
• 1035 - ft_multiplotER fails because the automatic layout is not correct
• 1036 - make ft_sourcemovieER, *TFR, ft_topomovieTFR, *ER
• 1037 - move code in ft_topoplotER to ft_topoplotTFR and let *ER call *TFR
• 1038 - the reading functions can support tgz and zip datasets, unzip on the fly
• 1039 - re-rename ft_rejectconfound to ft_regresscounfound
• 1040 - ft_prepare_sourcemodel cannot find potential inside dipoles...
• 1041 - ft_freqdescriptives needs NaN amount of RAM
• 1042 - leadfields do not scale appropriately with the conductivity
• 1043 - channelposition.m about line 73: subesequent code to FIXME fails Yokogawa systems
• 1044 - MNE does not work smoothly in the context of singletrial/rawtrial
• 1045 - add ft_checkconfig option: forbiddenval or unusedval
• 1046 - add explicit check for cfg.correctail = 'yes' in statistics_montecarlo
• 1047 - add a FAQ for cfg.correcttail and cfg.alpha in statistics_montecarlo
• 1048 - ft_sourcedescriptives handles cfg.inputfile wrongly
• 1049 - statistics_montecarlo requires cfg.dim, but I cannot find information what dim should/can be
• 1050 - fixsens should be replaced by ft_datatype_sens
• 1051 - fixsens breaks on data that has coilpos & coilori but NO coilpos
• 1052 - fixsens breaks on EEG data
• 1053 - fixsens breaks on EEG data
• 1054 - channelposition crashes for sens from layout neuromag306all.lay because of missing.tra
• 1055 - ensure that ft_neighbourplot internally uses the new-style elec/grad and not the old one
• 1056 - move ft_spike* functions to fieldtrip/contrib/spike
• 1057 - ft_freqanalysis_mvar is not documented itself, nor listed in ft_freqanalysis
• 1058 - ft_prepare_neighbours misses header script
• 1059 - create example script of regressing out headposition confounds
• 1060 - biosemi layouts have wrong&double labels
• 1061 - ft_topoplotER calls itself recursively instead of topoplotTFR
• 1062 - ft_chantype does not recognize neuromag 306 system
• 1063 - ft_connectivityanalysis does not remove the autocombinations properly anymore when computing bivariate granger
• 1065 - ft_topoplotER: error in script ft_plot_topo.m
• 1066 - update wiki and/or comments in ft_componentbrowser_old to plot components using new databrowser
• 1067 - sourcedescriptives should support cfg.trials if possible or warn the user
• 1069 - singleplotTFR cannot plot mask of 1xNxM
• 1070 - Reshape problem in ft_freqanalysis (line 587)
• 1071 - suggestion: sourcegrandaverage could support a cfg.roi for subselecting a brainregion of interest
• 1072 - the 'geometry' input field is inconsistent across forward models
• 1073 - TIP of the Day: "Do you know..." any?
• 1074 - for discussion in the FT meeting
• 1075 - ft_prepare_singleshell doesn't work
• 1076 - resolve the indx input argument that is used in ft_topoplotTFR
• 1077 - implement a general documentation structure for guidelines
• 1078 - all functions that use cfg.elec, cfg.elecfile or get it out out of the data should be consistent
• 1079 - the cfg parsing of ft_multiplotTFR fails
• 1080 - fixneighbours should be solved only once - in ft_checkconfig
• 1081 - ft_read_header.m eyelink ascii 2000Hz data reading error
• 1082 - the sign of OM lead fields and singlesphere seems to be inverted
• 1083 - remove nested functions and use normal functions instead
• 1084 - I came accross ft_freqanalysis_tfr in the fieldtrip main folder...
• 1085 - vol.skin and vol.skin_surface are not consistent across head models functions
• 1086 - time-frequency tutorial on the wiki is empty
• 1087 - replace simplefft in databrowser by a call to a browsefun
• 1091 - the alldist variable in ft_prepare_neighbours/compneighbstructfromtri seems to be unused
• 1094 - header caching for read_biosig_data.m
• 1096 - the documentation in ft_singleplotTFR for the directionality option should be revised
• 1097 - discuss the remove flag in ft_redefinetrial, possibly reimplement
• 1098 - the ft_qualitycheck reference documentation needs to be improved
• 1100 - the varargin and varargout of ft_denoise_pca should be properly documented
• 1101 - for discussion in the FT meeting
• 1102 - clarify output structure of ft_connectivityanalysis
• 1103 - 'linear' option missing in interp_ungridded
• 1105 - add ft_preamble and ft_postamble to ft_neighbourplot
• 1106 - add ft_preamble and ft_postamble to ft_conjunctionanalysis
• 1108 - extend/replace ft_spikesimulation and add an example to the tutorial
• 1109 - replace/update ft_spikesimulation, and add an example to the tutorial
• 1110 - ft_postamble attempts to address 'cfg' in fieldtrip2spss while this variable is never put in or created
• 1111 - ft_freqgrandaverage doesn't output a dimord
• 1113 - remove all old Log messages by the SVN Id
• 1115 - ft_headmodel_concentricspheres fails
• 1116 - ft_prepare_headmodel incorrect handling of defaults
• 1117 - SAM issue
• 1118 - reading ctf data from a dataset where all meg channels are disabled fails with the routines in external/ctf
• 1119 - Other Sam issue
• 1120 - resolve inconsistency in reading balancing coefficients
• 1121 - ft_prepare_headmodel singleshell method does not work
• 1122 - to discuss: would it make sense to provide a set of template 3D grids in the fieldtrip release?
• 1124 - SVN checkout hangs after about 20 files are checked out.
• 1125 - remove DC offset prior to time-domain filtering in ft_preproc_*filter
• 1126 - change handling of the mixing and unmixing matrix in ft_componentanalysis
• 1127 - implement variable loading consistently
• 1128 - collapse multiple calls of ft_checkconfig into one
• 1129 - implement firls filter and change default order of fir1 to 200
• 1130 - ft_sourceanalysis: cfg defaults settings inconsisent with new method-dependant cfg settings
• 1131 - Should ft_checkconfig also deal with fixdipole?
• 1132 - check that ft_datatype_sens is consistently used and replaced by ft_checkdata/-config where possible
• 1133 - neighbourplot does not plot neuromag306 layout&neighbours correctly
• 1134 - defaults for forward headmodel functions should be specified at the low level
• 1136 - ft_checkconfig could support 'custom' error messages
• 1137 - cellfun problem in sourcedescriptives
• 1138 - qsubxxx reference documentation on wiki is empty
• 1140 - update ft_connectivityanalysis
• 1142 - the cfg history is not fully kept in e.g. the artifact handling
• 1143 - begsample and endsample not processed for gdf in ft_read_event
• 1144 - undefined function ft_spikestation_sub_channelcombination
• 1145 - Global variable remains in memory of a peer in the qsub job distribution system
• 1146 - ft_selectdata with no selected trials
• 1147 - some surface functions need to be merged
• 1148 - meshes need to conform to a standardized matlab structure
• 1149 - clarify the options that specify what to plot
• 1150 - sourcestatistics fails to organise the input data in pos*rpt matrix
• 1151 - test_ft_preprocessing fails on assert, when k=9
• 1152 - ft_databrowser fails to zoom out more than 10 seconds in CTF MEG data
• 1153 - cfg is lost from the output structure after calling ft_redefinetrial
• 1154 - add the scirun format to the read headshape
• 1155 - cfg.sphereradius in ft_sourceinterpolate: undocumented but neccecary cfg field?
• 1159 - wiki twitter ticker sometimes times out
• 1160 - the selfun does not get executed properly in ft_databrowser
• 1161 - we need a drop-in replacement for the randperm function
• 1162 - Previous structure not saved
• 1163 - ft_timelockbaseline error when dimord 'subj_chan_time'
• 1164 - Keeping the code running when a anomalous packet type presents itself
• 1165 - ft_electroderealign internally still uses old sens structure
• 1166 - add option headshape and hdmfile to all fwd routines
• 1167 - ft_appenddata does not work properly for freq data (when the first frequency bin contains nans?)
• 1169 - can low-level fileio know how to read only requested channels?
• 1170 - neuroprax import functionality fails when selecting channels
• 1171 - Update documentation of mexfiles, and check for corresponding .m scripts (autocompilation, error msg and help).
• 1175 - trialinfo mistakenly removed in ft_rejectcomponent
• 1176 - assumed number of components/channels should not be hard-coded 10
• 1178 - ft_channelcombination fails with 3rd input argument
• 1179 - ft_rejectvisual crashes when ft_checkconfig is set to pedantic and preproc options are specified as fields of cfg
• 1180 - nanmean does not behave like mean
• 1181 - ft_preproc_detrend and ft_preproc_polyremoval should be merged
• 1182 - qsub functions crash in getglobal
• 1184 - ft_timelockgrandaverage cannot handle variables that lack an 'avg' field
• 1186 - Extend the plotting tutorial with the connectivity plotting functions
• 1187 - update configuration check for all spike functions
• 1188 - add checkdata for spike functions
• 1189 - add testing functions for all spike functions
• 1190 - add ft_datatype_spikeraw
• 1191 - allow users to disable mem and time usage messages.
• 1192 - ft_spikeanalysis should be removed
• 1193 - update ft_spiketriggeredspectrum_tfr and add new ppc functionality
• 1195 - integrate fieldtrip spike toolbox with mclust
• 1196 - conversion between spike and raw data representation should be done by ft_checkdata
• 1197 - Problem with reading Neuroscan 4.5 format file
• 1198 - add waveform functions to fieldtrip
• 1202 - some functions are missing function references ('See also ft_XXX)'
• 1203 - implement a ft_networkanalysis function
• 1204 - create tutorial/faq/example for 'dss' option in ft_componentanalysis
• 1207 - dimensionality of spike.waveform is not consistent across read out functions
• 1208 - functions for real-time interface with mysql database are missing
• 1210 - inconsistent number of grad.pnt and grad.labels
• 1211 - ft_chantype should be made faster
• 1214 - host name should be recorded in cfg.callinfo.hostname
• 1217 - running ft_realtime_headlocalizer on realtime MEG pc is problematic
• 1218 - one of the figures (possibly more) in the layout tutorial is outdated
• 1219 - the test data on /home/common/ for neuromag306 (raw) contains mostly 0's
• 1220 - the preprocessed test data for neuromag122 still contains 306 channel data
• 1221 - ft_prepare_atlas has an inconsistent input
• 1223 - the scaling of the three orthoplots in ft_sourceplot is inconsistent
• 1226 - nanstd: segmentation fault on single precision
• 1227 - implement gifti-format and nifti-format for ft_sourcewrite
• 1228 - improve the fsample computation
• 1229 - ft_preprocessing: output.cfg doesn't contain filter-order when defaulting
• 1230 - suggestion for enhancement of ft_rejectvisual
• 1231 - what's the intended output of ft_getopt({'rpt' []}, 'rpt', 'all')?
• 1232 - ft_selectdata cannot select trials from a source structure
• 1233 - typo in read_eeglabdata?
• 1235 - ft_selectdata (ft_selectdata_new) should retain sampleinfo when possible
• 1236 - ft_getopt is not properly implemented in sourceanalysis
• 1237 - ft_getopt fails on windows 64-bit systems
• 1238 - compile ft_getopt.c for Linux 32-bit, Mac 32/64 bit
• 1240 - ft_read_data call ft_filetype over and over again in call to ft_getopt
• 1241 - the svg figures on getting started with yokogawa crash the browser
• 1242 - databrowser time axis is incorrect for timelock input data
• 1245 - sens2lay (subfunction to ft_prepare_layout) does not always take a user specified subselection of channels into account
• 1246 - Biosemi2ft has undefined state for the split-trigger config option if not specified.
• 1247 - beamformer_sam lacks '%lambda' functionality
• 1248 - standard FIR filter order throws a warning
• 1249 - inconsistent grad-structure in output after ft_componentanalysis and ft_rejectcomponent
• 1250 - ft_preamble_distribute fails with varargin and varargout and with empty inputs
• 1251 - reference documentation for ft_movieplotTFR is missing
• 1252 - index of cfg options needs to be cleaned up
• 1253 - fieldtrip-bugs should be exempted from most bugzilla emails
• 1255 - stacking in qsubcellfun does not work together with compilation
• 1257 - ft_analysisprotocol should properly support multiple different branching scenarios
• 1258 - solid_angle (and potentially other mex-files) have ill-defined dependencies, especially on Windows
• 1259 - cfg.clusterstatistic = 'wcm' is undocumented
• 1260 - specest_changelog is missing from wiki
• 1261 - ft_plot_topo3d does not document its optional arguments
• 1263 - Contact Artinis for updated buffer for in NIRS acquisition
• 1264 - Revive automated testing
• 1265 - error while running "ft_megrealign"
• 1266 - GDF files are written in blocks of 1 gig (biosemi2ft buffer), but not concatinated when read
• 1267 - error while running "ft_timelockstatistics"
• 1268 - statfun_indepsamplesZcoh needs cfg.label or cfg.pos in input, but they are not used
• 1270 - mask option ft_singleplotER
• 1271 - is the /home/common/matlab/fieldtrip_private symlink still needed?
• 1272 - ft_multiplotER - maskparameter does not work
• 1274 - complete the CSP implementation in ft_componentanalysis
• 1275 - ft_networkanalysis misses a lot of the documentation
• 1276 - makeselection subfunction in ft_selectdata_new should support vectorial seldim
• 1277 - prewhitening functionality in ft_sourceanalysis misses low-level function
• 1278 - ft_multiplotTFR with cfg.interactive='yes' results in improper singleplots when cfg.baselinetype='relchange'
• 1279 - ft_artifact_zvalue crashes in interactive mod
• 1281 - make reading of GDF events and channels more memory efficient
• 1282 - alleged bug in ft_topoplotCC
• 1283 - trunk\src\reset mex file overwrites built-in function
• 1284 - ft_electroderealign has a syntax error
• 1285 - make ft_fetch_vol similar to ft_fetch_sens
• 1286 - test data for datatype_sens is not present
• 1287 - ft_megplanar has qualitatively different results than some months ago
• 1288 - ft_senstype does not recognize combined planar data correctly
• 1289 - plotting functions could change the figure window title
• 1291 - consider to use addpref/getpref instead of the global ft_default
• 1292 - Make online list with publications relevant for the FieldTrip buffer
• 1293 - number of output arguments requested by user should overrule nargout
• 1294 - ft_redefinetrial.m rare channel label output
• 1295 - ensure consistent handling of the handedness of the volumetric data with respect to the real-world coordinate system
• 1296 - ft_read_mri doesn't work for .mgz files under a PC
• 1297 - error at ft_volumesegment
• 1299 - gtec_mat support disappeared from ft_read_header in svn merged branch
• 1300 - test_ft_timelockanalysis fails on k=18
• 1301 - Organize bugs to work on during bug-binge 20120201
• 1302 - extend the regression testing framework with old versions
• 1303 - test_datasets path changed
• 1304 - revamp the handling of artifacts
• 1305 - preproc requires the deprecated offset as input
• 1306 - ctf64 data: ft_datatype_sens(data.grad) fails after call to ft_selectdata
• 1307 - producing a layout from a bti248 grad structure results in a faulty layout
• 1308 - default (recommended) workflow on wiki/reference docs should reflect most common workflow
• 1309 - Cannot determine geometrical units of volume conduction model
• 1311 - copy the improved 16/32 bit Neuroscan CNT detection from EEGLAB
• 1312 - ft_datatype_sens is sometimes used where sens can be empty
• 1313 - chantype/chanunit -> should we consider to represent them at the level of the grad, rather than in the header?
• 1314 - consider incorporating MNI source grids into ft_prepare_sourcemodel
• 1315 - *something* in convert2raw or raw2timelock or timelock2raw ruins time-axis
• 1316 - use spm_bwlabel also for 2D data
• 1317 - implement forward solution based on leadfield interpolation
• 1318 - improve the filter padding options for the ft_preproc filter functions
• 1319 - implement an engine-based distributed computing toolbox
• 1320 - make test scripts for the pieces of code where spm8 calls ft functions
• 1321 - projectmom in ft_sourcedescriptives suboptimal for time domain methods?
• 1322 - clean up old test scripts from realtime/biosemi implementation
• 1323 - should LF column normalisation occur before or after dipole orientation selection?
• 1324 - read_trigger and read_ctf_trigger produce different output
• 1325 - positive z-axis points downwards after ft_volumerealign
• 1326 - preproc loop can be removed in rejectvisual_XXX and ft_timelockanalysis when cfg.preproc is empty
• 1327 - reading ASC eyelink files - doesn't recognize 'em as such
• 1328 - add support for SLURM backend
• 1329 - instructions to sourcegrandaverage and sourcestatistics are not clear in combination with the sourcestatistics example script
• 1330 - y-axis of z-scored rejectvisual plots says /muV or Tesla instead of z-score
• 1334 - stacking in qsubcellfun does not work together with StopOnError=false
• 1335 - dataplots should scale component topos according to the individual topos minmax
• 1336 - StopOnError=false does not work with exceeded walltime errors
• 1338 - channelrepair not possible after componentanalysis and -rejection
• 1339 - wrong number of sensors from bti2grad
• 1340 - PROGRESS
• 1341 - trialfun_general an be made more robust
• 1342 - ft_denoise_pca bug?
• 1343 - Problem in ft_denoise_pca when the 'pertrial' option is set to 'yes'
• 1344 - Problem in ft_denoise_pca, returned 'time' field might be wrong
• 1345 - solid_angle does not work in windows 64bit
• 1346 - Not all executables in the realtime dir compile correctly.
• 1347 - readCTFds cannot read BCIT MEG files
• 1349 - jan-mathijs is missing
• 1350 - DICS & PCC only work with .refdip in main cfg, not as subcfg (which would be expected)
• 1351 - checksize in checkconfig takes ages on a grandaverage
• 1353 - Problem with ft_chantype for Neuromag
• 1355 - there is a bug in ft_volumesegment
• 1356 - check whether the Neuromag Triux MEG system is fully supported
• 1357 - ft_singleplotER crashes on single channel freq data
• 1358 - functional sourcedata needs to be interpolated before plotting...
• 1360 - generate mesh artifact functions
• 1361 - add backend='inprocess' option to qsubfeval
• 1363 - subplots sometimes not plot in ft_artifact_zvalue
• 1364 - rda2ft converts a 'S 1' simulus into an int32 -1 value
• 1366 - add a small version of biosig file reading functions to fieldtrip/external
• 1368 - leadfield normalization fails for openmeeg forward solution
• 1369 - incorrect call of preproc inside ft_artifact_threshold
• 1370 - Buffer crashes or does not keep up with the load from time to time
• 1371 - ft_plot_topo (/ER/TFR) should support nan values per channel
• 1372 - give warning if user might have used addpath(genpath(FT))
• 1373 - Search for old-style cfg renaming
• 1374 - check for consistent use of preamble loadvar and subsequent cfg.inputfile and cfg.outputfile
• 1375 - sourceinterpolate help should be merged
• 1376 - cfg options should obey to (updated) code guidelines
• 1377 - implement support for reading NetMEG data
• 1378 - ft_getopt.mexglx looks for libstdc++.so.5
• 1379 - non-desired behaviour for lcmv with trial and filter input to ft_sourceanalysis
• 1380 - ft_checkdata fails with 'source' data with .pos field
• 1381 - BUG with a *.mexw64 file
• 1384 - mex files for windows 32 should be compiled according to the guidelines
• 1385 - mex files for windows 64 should be compiled according to the guidelines
• 1386 - ft_prepare_headmodel should call ft_hastoolbox when cfg.smooth = 'yes'
• 1387 - fr_sourcedescriptives does not support keepmom and keepnoise*
• 1388 - ftp-server fieldtrips don't seem to be updated
• 1391 - preproc converts time axis to fsample and offset and then recreates the time axis
• 1393 - extend example script for LCMV, for general time-domain source analysis
• 1397 - The tutorial about coherence has a bug
• 1398 - FT nansum do not work on a vector of booleans
• 1399 - channel selection mismatches displayed name in ft_reject_visual in summary mode
• 1400 - documentation of ft_appendfreq cfg.parameter missing
• 1401 - Add ft_artifact_shiftdetect
• 1402 - Error in ft_senstype at 188, Reference to non-existent field 'nChans'.
• 1403 - unit ERP?
• 1404 - implement support for the neurosim spikes and signals file format
• 1405 - ft_senstype does not work with volume data
• 1406 - ft_progress could print the progress in place, rather than use newlines
• 1407 - finalize the egi_mff implementation
• 1408 - make the demeaning of data prior to filtering consistent
• 1410 - bugs cannot go from REOPENED to ASSIGNED anymore
• 1411 - Error in ft_volumenormalise : 'spm_vol_minc' function missing
• 1413 - minor improvements on minimumnormestimate
• 1414 - fix the test scripts
• 1415 - fix the following the test-functions
• 1416 - unexpected behavior of ft_setopt
• 1417 - fix testing scripts
• 1418 - ft_selectdata_old fails on output of ft_connectivityanalysis when called as: selectdata(data,'channel',chansel)
• 1419 - ctf64 data cannot be detected as MEG data
• 1420 - test_ft_freqanalysis because stored data differs from newly compute data
• 1421 - test_bug1309 ends with SVD error on NaN
• 1422 - ft_sourceinterpolate returns the incorrect inside field when interpolating from 2D to 3D
• 1423 - ft_sourcestatistics does not support latency and foilim selection (in old implementation)
• 1424 - ft_databrowser: cfg.compscale default confusing
• 1426 - the openmeeg volume conduction model fails in some test scripts
• 1427 - allow egi_mff to be read when one of the files in the directory/package is given as filename
• 1428 - implement blocking in ft_read_data
• 1429 - ft_componentanalysis returns slightly different results from the stored test results
• 1430 - ft_componentanalysis applies a scaling factor of 1/x even if x = 0
• 1431 - ft_selectdata_old unexpected toilim behavior
• 1432 - ft_prepare_singleshell and ft_prepare_headmodel give different results
• 1433 - test_ft_datatype_sens fails
• 1434 - statfun_XXX should be ft_prefixed(?)
• 1435 - trialfun_XXX should be ft_prefixed(?)
• 1436 - make sure ft_prepare_layout loads .mat if .lay does not exist
• 1437 - Check and add the Quickcap64 layout from Julian Keil (see mailinglist)
• 1438 - reading 4D data fails for empty room data
• 1439 - ft_denoise_synthetic needs reference channels as input, if they are missing output description is wrong since data hasn't changed
• 1440 - fixname doesn't parse filename correctly leading to error in warning once
• 1441 - openmeeg test scripts are not executed
• 1442 - add cfg.channel in ft_prepare_neighbours, and add warning when no neighbour is found
• 1443 - ICA component rejection followed by leadfield computation
• 1444 - random number generator
• 1445 - document grad structure
• 1446 - ft_selectdata_old does not yet handle mixed channel labels over input data stucture
• 1447 - implement highlighting in ERP figures (multi and singleplot) with the potential difference
• 1448 - mask in ft_singleplotTFR
• 1449 - implement an ft_version function
• 1450 - subfields in ft_default are not added to input cfg by ft_checkconfig
• 1451 - clusterstat (sourcestatistics) crashes on use of spm_bwlabel
• 1452 - all functions should explicitly create a new output-structure
• 1453 - Implement get_hdr_wo_chnks (get header without chunks)
• 1454 - the info on MEG dataformats should be moved on the wiki
• 1455 - yokogawa2grad_new
• 1456 - ft_multiplotTFR y default no longer does NaN-masking, and created a black patch behind all plots
• 1457 - OpenMEEG should come packaged with FieldTrip
• 1458 - ft_chantype does not recognize a grad structure correctly
• 1459 - ft_multiplotTFR needs some fixes
• 1460 - clusterbasedpermutation freq plots nans (i.e. nothing)
• 1462 - speed up ft_prepare_neighbours
• 1463 - improve the quality control for the plotting functions
• 1464 - "dimord" field
• 1465 - acticap 3d electrode positions needed
• 1466 - brainvision 'getting started' documentation
• 1467 - time course of source results
• 1469 - inputfile in ft_preprocessing
• 1470 - ft_megplanar outputs NaNs when using input data containing backprojected components.
• 1471 - providing dataset without full path can lead to unexpected behaviour -> propose warning in ft_filetype
• 1472 - tutorial for event-related cluster-permutation does not use ft_clusterplot.m
• 1473 - ft_denoise_pca: crash in trial mode
• 1474 - rejectvisual summary fails on single-channel data
• 1475 - Alignment of layout problem in ft_plot_topo.m
• 1476 - cfg.interactive, xlim/ylim not kept
• 1478 - fast vs very-slow processing in ft_freqanalysis on similar data.
• 1479 - reading in polhemus locations; yokogawa warning and extra .chanpos field
• 1480 - struct() crashes on config-object when this object contains a struct array with one of the fields being itself a struct
• 1481 - .balance not exist in senstype elec
• 1482 - elec.tra created/updated during ave-reref?
• 1483 - dimord 'rpt' not yet allowed in ft_selectdata_new
• 1484 - ft_freqbaseline uses cfg.param instead of cfg.parameter (which would be consistent with other functions)
• 1485 - Illogical ~Jan-Mathijssing in megplanar
• 1486 - improve artifact detection and rejection for unstable acquisition systems
• 1487 - the email lists have changed from @donders to @science
• 1488 - ft_specest_mtmfft should support variable number of tapers over frequencies
• 1489 - implement support for neurorighter data format
• 1490 - Problem with reading Neuroscan 16bit file (again)
• 1491 - a wiki page should be created on how to generally compensate for head movements in MEG
• 1492 - unexpected behavior ft_multiplotTFR: when calling with 4d input the result is empty topoplot
• 1493 - function names are conflicting with other toolboxes
• 1494 - update yokogawa to the latest version 1.04.01 of 01-Nov-2011
• 1495 - ft_appendtimelock along channel dimension
• 1496 - fixsampleinfo bug with timelock data without trials
• 1497 - provide more pointers to good reference literature
• 1499 - ft_singleplotER does not plot statistical error
• 1500 - find a date for a day out with the fieldtrip team
• 1501 - ft_spiketriggeredspectrum
• 1502 - forbid fields in cfg that are not used
• 1503 - apply phase rotation for multitaper in ft_spike spiketriggeredspectrum
• 1505 - delete the fieldtrip/multivariate directory
• 1506 - test bug to check that the fieldtrip-bus list still works
• 1509 - Wrong scaling for Brainvision data (from Christophe Phillips)
• 1510 - BEM meshes seem to be intersecting in MEG forward model with openmeeg
• 1511 - make test scripts for plotting functions
• 1512 - read_nex_event sample + 1 missing
• 1513 - grid and vol different units (neuromag data)
• 1514 - ft_spike_select should be merged with ft_selectdata
• 1515 - databrowser with viewmode=vertical should get better vertical ticks
• 1516 - update the source localization figures in the CMC tutorial
• 1518 - reference to ft_checkcoordsys exists while there is no such function
• 1519 - ft_componentanalysis error when no IC are found
• 1520 - ft_checkdata is very slow on component data
• 1521 - eps version of the logo is missing
• 1522 - ft_databrowser fails with cfg.viewmode='component' because grad structure has been changed
• 1523 - headmodel tutorial
• 1525 - misalignment of sample number between event and data
• 1526 - make a list of FT functions that (can) deal with component data
• 1527 - ft_sourceplot fails on a source structure with a single frequency
• 1528 - implement test script based on the various EEG data that is available
• 1529 - unexpected behavior of ft_plot_ortho
• 1530 - ft_sourceplot fails on parameterselection
• 1531 - triang didn't work for mtmconvol because of extra [] input argument
• 1532 - Siemens acquisition software cannot be recompiled
• 1533 - nrpt size does not match varout size in ft_connectivityanalysis after keepchn selection
• 1534 - spass2fieldtrip sample rate hard coded
• 1535 - Nanvar gives inaccurate results
• 1536 - ft_getopt fails on windows 64 bit
• 1537 - memtic/memtoc do not always provide accurate results, leading to jobs getting killed
• 1538 - the comments in the matlab code in the eventrelatedaveraging tutorial have the conditions mixed up
• 1539 - provide a link to the trialfun on the ftp server
• 1540 - ReadHeader has to be moved from fieldtrip/private to fileio/private
• 1541 - neighbourselection is slow when providing data as input
• 1542 - ft_spike_is is using checkopt with ascendingdoublebivector
• 1543 - spike_crossx_matlab doesn't check for empty inputs
• 1544 - Wrong cfg.keeptrials default in help of ft_spikedensity
• 1545 - Fp1 and Fp2 have small p s in layout biosemi64.lay
• 1546 - calling resampledesign with a control variable can yield incoherent results
• 1547 - rename cfg.vol into cfg.headmodel and cfg.grid into cfg.sourcemodel
• 1548 - spike_crossx mex file
• 1549 - Add patch for ft_read_header/data for TNO-specific gTec MATLAB format
• 1550 - ft_spike_maketrials cfg.trl
• 1551 - 'spline' method fails in ft_channelrepair
• 1552 - implement ft_math_xxx functions
• 1553 - add the dcc customized acticap64 and acticap32 layouts
• 1554 - ft_sourceinterpolate does not work for grand average data
• 1555 - multiple warnings of adding FieldTrip
• 1556 - bug in paired ANOVA
• 1557 - add trentool to fieldtrip/contrib
• 1558 - trialinfo lost after artifact rejection
• 1559 - example script symmetric_dipoles is not finished
• 1561 - bandpass filter seems to be direction sensitive
• 1562 - add check in ft_channelrepair to verify spherical coordinates / fit to sphere for SSI
• 1563 - ft_sourceinterpolate using 'spline' interpolation crashes on win64/Matlab 2010b
• 1564 - Creation of trialinfo field using ft_redefinetrial
• 1565 - re-implement the analysisprotocol function to allow exporting the pipeline/workflow to file
• 1566 - .offset output in eeglab2fieldtrip obsolete
• 1567 - improve the detection of BrainVision *.dat files
• 1568 - EGI layout fails for ft_databrowser with components
• 1569 - layout file for .sfp EGI 256 to use with databrowser
• 1570 - ft_filetype overlapping between eyelink and itab MEG header *.asc file extension
• 1571 - dftfilter does not work when not segmenting trials?
• 1573 - GrandAVG and Stats can't be plottet on anatomy or be interpolated on an MRI
• 1574 - baseline/normalization with grand averaging
• 1575 - dmlt +dml folder not added in some computer setups
• 1576 - actvsblT cannot handle source data (yet)
• 1577 - ft_volumelookup adds fields which are forbidden
• 1578 - ft_volumelookup adds empty cfg structures, but checks with isfield rather than isempty
• 1579 - CalcMD5 mex file is missing for most platforms
• 1580 - FAQ: What kind of volume conduction models are implemented?
• 1581 - head model or volume conduction model?
• 1582 - The biosemi acqisition does compile not on OSX when targeting 64-bit.
• 1583 - ft_prepare_sourcemodel should use ft_fetch_sens and ft_fetch_vol
• 1584 - singleshell nolte options should be specified in the vol structure, not in a cfg field
• 1586 - tex formatting fails in ft_analysisprotocol
• 1587 - ensure consistent handling of skin/skull/brain/source surfaces in vol
• 1588 - ft_fetch_sens should fetch units
• 1589 - LCMV with keepmom = 'no' crashes, when using a precomputed filter
• 1590 - simbio fem modeling should be documented
• 1591 - add "look for LaPlacian" in header FT_SCALPCURRENTDENSITY
• 1592 - allow for a dimord that is different from the standard ones
• 1593 - number of channels can be mismatched with neighbours in ft_statistics_montecarlo with clusters
• 1594 - consider whether spm_bwlabel should also be in default fieldtrip
• 1595 - symbolic link in tobi messes up svn on windows disk
• 1596 - ft_selectdata_old with toilim not work on timelock data .avg and .cov correcltly
• 1597 - ft_selectdata_new not work with toilim
• 1598 - LCMV should warn/error if hascovariance=false
• 1599 - fixedori has no influence when using LCMV
• 1600 - .inside not updated in ft_checkdata(data,'datatype','source')
• 1601 - make online IKEA beamformer, especially part on common filters
• 1603 - copy the demo_buffer application to utilities/buffer
• 1604 - pthreads dlls should only be in external, not in buffer
• 1605 - fieldtrip/realtime/src/acquisition/brainamp directory is empty
• 1606 - ft_plot_slice fails for orientation different than z-direction
• 1607 - realigning channel order changes ft_topoplots
• 1608 - new options for mne source reconstruction should be documented
• 1609 - ft_sourceplot ortho method: error
• 1610 - autodetected layout for ctf151 has 1e-10 width and height
• 1611 - in ft_electroderealign, template not checked correctly?
• 1612 - ft_electroderealign() cannot correctly align electrodes to head shape if the head is not in CTF orientation
• 1613 - Unnecessary Yokogawa warning
• 1614 - ft_default.trackconfig = 'report' results in obscure low-lvl cfg-object error when plotting interactively in ft_multiplotTFR
• 1615 - qsubcellfun does not detect java runtime error
• 1616 - Add dimord for every numerical field in datastructures
• 1617 - check tutorials for use of *grandaverage with keepindividual='yes'
• 1618 - Problem with a BV variant
• 1619 - ft_prepare_sourcemodel crash
• 1620 - ft_databrowser: continuous = yes, fetch_data error error: some of the requested samples occur twice in the data
• 1621 - ft_databrowser: viewmode vertical, default vertical scaling does not make sense (too zoomed out)
• 1622 - ft_fetch_data always gives error when trials overlap in data
• 1623 - ft_databrowser: when continuous = 'yes', last segment is stretched disregarding the horizontal scaling
• 1624 - ft_databrowser: ft_prepare_layout is called much more often then necessary when plotting components
• 1625 - ft_databrowser: plotting components is terribly slow
• 1626 - ft_plot_topo: current vs previous argin fails for ft_databrowser with components, resulting in recomputing the mask each time
• 1627 - Button click command do not respond as extected in ft_databrowser
• 1628 - ft_databrowser: when cfg.ploteventlabels is the default, events are plotted on top of each other, making them unreadable
• 1629 - ft_databrowser: implement right-click context menu for 'selfun'
• 1630 - applying average mastoid reference derivation to EEG data
• 1631 - ft_select_range: add context menu capabilities
• 1632 - inventorize common usage of keyboard shortcuts
• 1633 - ft_databrowser: preproc-window
• 1634 - ft_databrowser: check consistency of topoplots when using mat-files for layouts
• 1635 - ft_databrowser: rework browse_simplefft
• 1636 - ft_select_range uses data limits instead of figure axis limits for horizontal selection
• 1637 - planar gradient computation is wrong
• 1638 - Install the realtime head localizer in Frankfurt
• 1639 - ft_select_range: change order of callback input arguments
• 1640 - ft_select_range: attempt to change implementation context menu
• 1641 - ft_databrowser: implement magical mouse-wheel-scrolling
• 1642 - ft_databrowser: implement even more magical data-dragging
• 1644 - optional display of dewar/sensors in combination with realtime MEG headlocalizer
• 1645 - implement http download of code and data as alternative to ftp
• 1646 - ft_prepare_mesh_new needs to be integrated with ft_prepare_mesh
• 1647 - random number initialization will (again) change after matlab2012a
• 1648 - qsubcellfun fails on matlab version 7.8 (2009a)
• 1649 - cfg option Ftest starts with an upper-case character, should be lower-case
• 1650 - similar cfg options should have similar reference documentation
• 1651 - inconsistent binary masks in ft_volumesegment that leads to error in ft_prepare_mesh
• 1652 - redesign the functions that use segmentations and clarify the representation for segmentation and parcellation
• 1654 - ft_read_headshape should have better reference documentation
• 1655 - investigate best way to handle user interfaces
• 1656 - input variable name should be consistent with the data type
• 1658 - ft_sourcedescriptives should have the option cfg.trials
• 1659 - add figures from documentation to faq on head coordinates
• 1660 - ft_fetch_data: says it fills with NaNs when data not present, but doesn't
• 1661 - ft_databrowser: NaN-padding is now inconsistently applied both in the function, and by fetch_data
• 1662 - implement support for the scirun data format and use it as FEM testcase
• 1664 - Improve neuromag and yokogawa FAQ
• 1665 - align_ctf2spm.m fails on regular donders MRI data
• 1666 - convert the example scripts into test scripts
• 1667 - improve the caching implementation in ft_read_data
• 1668 - deprecating intermediate level of preprocessing
• 1669 - make the regression test dashboard sortable
• 1670 - make favicon for fieldtrip wiki
• 1671 - move the dics appendix in the coherence tutorial to a separate page
• 1672 - test_headmodel_infinite fails
• 1673 - test_ft_plot_slice fails
• 1674 - test_ft_plot_vector fails
• 1675 - Check mail reporting of regression test results
• 1676 - realtime folder not added properly due to restructuiring of subfolders
• 1677 - problem with using a trial selection to do freqdescriptives on a subset of trials
• 1678 - Figures in the visual artifact rejection tutorial are inconsistent
• 1679 - small bug in ft_prepare_headmodel
• 1680 - qsubcellfun fails if you change directory in startup.m
• 1681 - MEG qualitycheck has not processed recent datatsets (since july)
• 1682 - some options of ft_plot_vol are not documented
• 1683 - order of given parameters affect output of ft_freqgrandaverage
• 1684 - rename subj2.zip on the ftp server and documentation
• 1685 - 'sampleinfo' non-existent error when selecting a time window with ft_selectdata
• 1686 - improve debugging of end-users problems using logging options
• 1687 - fieldtrip buffer implementation in BCI2000 fails
• 1688 - there is a file called "testname" in the ftp zip file release
• 1689 - allow exporting of connectivity networks to a common file format
• 1690 - peer-to-peer should not be mentioned in the reference documentation
• 1691 - ft_multiplotER interactive callback ignores common masked region
• 1692 - multiplotER does not support maxabs
• 1693 - ft_freqanalysis should support variable number of tapers over frequencies for method = mtmfft, taper = dpss
• 1694 - ft_scalpcurrentdensity does not has new style of progress bar yet
• 1695 - events are not shown in ft_databrowser
• 1696 - could ft_sourcemovie accept inflated surfaces? could its output be saved in a movie file?
• 1697 - build in support for SPM12
• 1698 - add 'fieldtrip' button to menu bar of figures
• 1699 - ft_artifact_xxx calling ft_artifact_zvalue are deprecated
• 1700 - update the readers in the external/besa directory
• 1701 - ft_senstype fails to detect CTF275 when it is called on a subset of channels
• 1702 - ft_filetype has difficulties automatically detecting 4d-files
• 1703 - add elan2fieldtrip and fieldtrip2elan to exchange data back and forth
• 1704 - Crash when preparing layout for Neuromag
• 1705 - Some test script yield excessive output
• 1706 - implement ft_preproc_smooth
• 1707 - channel order shouldn't matter for the output of an ft_function
• 1709 - ft_prepare_headmodel (singleshell) can be made more robust
• 1712 - ft_databrowser: channel-labels are displayed in Tex, distorting '_' and such
• 1714 - Some automated tests only fail when run on Torque
• 1715 - Transpose operation missing in ft_channelcombination.m
• 1716 - ft_artifact_zvalue x-axis can show time rather than samples
• 1718 - create a lcmv tutorial based on Johanna's SEF data
• 1719 - ensure that the spike tutorial works on Neurosim data
• 1720 - ensure that the spike-field tutorial works on Neurosim data
• 1721 - create and add template grads
• 1722 - why is cfg.warp only used if cfg.method=template, in ft_electroderealign?
• 1723 - remove/rename ft_checkcoordsys to ft_determine_coordsys on wiki/reference doc
• 1724 - ft_read_headshape does not support mne_tri and mne_pos fileformats
• 1725 - replace ft_prepare_atlas by ft_read_atlas
• 1726 - ctf realtime buffer acq2ftx naming inconsistencies
• 1727 - ft_volumereslice chunks off top of the brain
• 1729 - unequal frequency axis cannot be plotted properly (ft_singleplotTFR/ft_plot_matrix)
• 1730 - consider making a function private to the preproc module that implements various ways of padding
• 1731 - implement tighter provenance using md5 hashes on input and output
• 1732 - fprintf to stderr is caught as error by qsubcellfun
• 1733 - implement hints for pipeline structure on wiki
• 1735 - ft_appenddata doesn't append data correctly --> ft_databrowser and ft_fetch_data failure
• 1736 - implement a function in fieldtrip/private as replacement for imfill holes
• 1737 - warning_once does not support the syntax warning(id, msg)
• 1738 - make the binary masks in ft_volumesegment consistent
• 1739 - ft_specest_mtmfft: rework description and implementation of angletransform
• 1740 - replace FINITE with ISFINITE in SPM2 external
• 1741 - ft_read_mri: SPM2 added by default for .mnc volumes
• 1742 - problem with number of qsubcellfun output argument
• 1743 - pos2dim3d disappeared?
• 1744 - test_ft_conjunctionanalysis fails
• 1745 - test_ft_prepare_localspheres.m fails
• 1746 - grid.leadfield (and filter) should be accompanied by a label field
• 1747 - the reading functions can support URL syntax, download on the fly
• 1748 - read_neurosim_spikes is slow
• 1749 - problem with ft_artifacft_zvalue
• 1750 - use consistent option names for segmentationstyle, inside and cmbrepresentation
• 1751 - Adding the autosync SVN property does not trigger a sync.
• 1752 - implement a circular layout for ft_prepare_layout
• 1753 - allow multiple nested memtic/memtoc calls
• 1754 - new compiled nanXXX functions don't work
• 1755 - ft_datatype_segmentation uses determine_segmentationstyle
• 1756 - ft_voltype not work with bem, or 'bnd' field not detected correctly
• 1757 - BQ* ref sensors not found in ft_chantype
• 1758 - ft_freqanalysis does not work on spike structure
• 1759 - ft_apply_montage: sparse matrix multiplication leads to different results than full matrix multiplication
• 1760 - the horizontal axis in ft_multiplotER is at a weird location
• 1761 - nanstd breaks ft_statfun_indepsamplesT because it expects less input arguments (than std)
• 1762 - config object fails on struct-array
• 1763 - defining electrode position with fieldname 'elecpos' doesn't work
• 1764 - speed up volumethreshold (used in ft_datatype_segmentation)
• 1765 - standard_grid3d10mm does not fit well after non-linear warp
• 1766 - check the test_headmodel_xxx scripts
• 1768 - win32bit: nan* mex files missing
• 1769 - qsubcellfun does not work when parentheses () are present in path
• 1770 - improve the neuralynx NRD implementation
• 1771 - test_tutorial_clusterpermutationfreq only passes on odd revisions... a.k.a. 'the pulsar'
• 1772 - load_dicom_series structure mismatch
• 1773 - ft_read_header should be made faster
• 1774 - bug binge on 10 October 2012
• 1775 - implement ft_sourceparcellate function
• 1776 - ft_channelselection: should this produce an error when no channels are selected?
• 1777 - ft_spike_xcorr nlags/size of .xcorr field
• 1778 - processed data on ftp differs slightly from newly processed data
• 1779 - ERF tutorial fails to find significant effect said to be in data
• 1780 - prepare_singleshell to ft_prepare_singleshell?
• 1781 - ft_version breaks
• 1782 - prepare_singleshell in ft_prepare_headmodel is using imfill
• 1783 - wfu AAL atlas has a bug; need full update to version 3.0.3 on /home/common
• 1784 - How to stop the buffer inside the matlab?
• 1785 - implement support in ft_read_sens for the waveguard electrode file format
• 1786 - sphericalSplineInterpolate - does not converge
• 1788 - ft_electroderealign doesn't work with option cfg.elec
• 1789 - ft_databrowser: when cfg has trl in ft_databrowser(cfg) no trial segmentation is done
• 1790 - ft_version() returns FT_ROOT/utilities in ftpath
• 1791 - implement a function for TMS artifact removal
• 1793 - the ERF cluster stats tutorial is incorrect w.r.t. dealing with individual trials
• 1794 - ft_prepare_leadfield output discrepancy between cm and mm units for predefined grid
• 1795 - integrate new plexon readers into fieldtrip/fileio
• 1796 - prepare_headmodel checks for vol.unit, but old headmodels do not have a .unit field
• 1797 - ft_artifact_zvalue (and ft_artifact_xxx) fail
• 1799 - ft_prepare_leadfield fails due to infinite loop in
• 1800 - ft_topoplotER does not map correctly channels in data to channels in topoplot
• 1801 - consider using sens.type for grad and elec
• 1802 - Error Message Using ft_volumewrite With Tutorial Data
• 1803 - there is a wiki page with "known problems" that predates bugzilla
• 1804 - check whether ft_defaults respects existing path-order
• 1805 - ft_spike_phaselockstat missing
• 1806 - grad.type has to be updated following ft_megplanar
• 1807 - bti248 gradiometer system is not explicitly defined
• 1808 - wrong counter variable in elseif branch in loop defining the grad-struct, n instead of k
• 1809 - annoying warning when calling nanvar with w=[]
• 1810 - test_ft_timelockanalysis fails
• 1811 - printstruct.m utility does not support function_handle variable
• 1812 - ft_electroderealign doesn't work (probably because of ft_datatype_sens)
• 1813 - ft_fetch_header: requires grad field in header
• 1814 - ft_spike_waveform: typo in config option
• 1815 - ft_prepare_mesh should make hexahedral mesh
• 1816 - extend ft_volumesegment with FSL BET and FAST
• 1817 - ft_prepare_sourcemodel should deal with input/output for simbio headmodel
• 1818 - ft_read_headshape has to be made consistent with new segmentation/parcellation
• 1819 - ft_read_headshape should return the label for tetgen files
• 1820 - ft_headmodel_simbio needs to be updated
• 1821 - test_headmodel_simbio needs to be updated
• 1822 - the EEG heademodel tutorial needs to be extended with simbio FEM
• 1823 - make a MNI template brain available using SIMBIO FEM
• 1824 - update the external_simbio group on SVN
• 1825 - read_plexon_nex and plexon_nex in ft_read_data
• 1826 - make a version of ft_volumerealign that can align T1, T2, PD, CT, DTi and such to each other
• 1827 - ft_hastoolbox: 'BCT' case occurs twice in the switch-statement
• 1828 - ft_convert_coordsys fails with particular input MRI dimensionality
• 1829 - rank deficient warning in beamformer_* and Maxfilter data
• 1830 - merge the functionality of ft_sensorrealign, ft_electroderealign and ft_interactiverealign in one or two functions
• 1831 - consider adding a vectorized version for ptriproj
• 1832 - ensure that the MNI template grid works without the user having to deal with unit conversions
• 1833 - update ft_plot_mesh for hexahedra and tetrahedra
• 1834 - Impossibility to use ft_volumewrite using the data and code from the tutorial
• 1835 - external/dss includes a lot of files that are not needed
• 1836 - ft_write_headshape has to be extended to allow the export of FEM meshes
• 1837 - clean up the external/simbio directory
• 1838 - Wrong path in the -I and -L flags in the buffer compile.m
• 1839 - ft_sourceplot doesn't work for source from timelock data
• 1840 - ft_read_headshape has to be extended to allow the import of FEM meshes
• 1841 - get hands-on experience with branching and merging with SVN and/or GIT
• 1842 - use nan(x,y,z) when appropriate?
• 1843 - atlas: where and how can I download them? links do not work or are unclear
• 1844 - FT "likeable" wishlist
• 1845 - ft_preproc_padding: 'padtype' variable not initialized
• 1846 - ft_sourceplot returns multiple labels for one point while ft_volumelookup returns only one label for the same (voxel)point
• 1847 - clusterstat gives error for one sided test (cfg.tail = -1) using nonparametric clusterthreshold
• 1848 - fix some small topics that have been requested for spm12
• 1849 - second output argument not initialized for read_ctf_cls
• 1850 - ft_channelrepair usind 'spline' method fails for CTF MEG data
• 1851 - create test script for dataunits in ft_read_header and data
• 1852 - create test script for dataunits in ft_prepare_vol_sens
• 1853 - coherence data cannot be topoplotted by default
• 1854 - spm fieldtrip integration fails
• 1855 - enfore equality between number of channels and size(tra,1) in sensor array
• 1856 - make sure that elec/grad channel units and that hdr.unit are specified for MEG systems, biosemi, brainvision and egi
• 1857 - list of test scripts on fieldtrip/development/dashboard is not updated when test scripts are removed
• 1858 - ft_megplanar data not correctly identified as ctf275planar, but as ctf275
• 1859 - test_ft_sourcemovie not finished
• 1860 - several test scripts fail depending on execution host
• 1861 - test_ft_componentanalysis should not test equivalence of last components in rank deficient data
• 1862 - remove and recompute all latest test data
• 1863 - the svn test directory is filling up with mat files
• 1864 - test_ft_spike_phaselockstat does not exist in trunk/test, but shows up on dashboard
• 1865 - test script e-mail should list the differences to the previous one
• 1866 - add icasso-toolbox to fieldtrip/external
• 1868 - Wrong determination of Sampling Frequency leads to error in Morlet Wave
• 1869 - forward/ft_senstype.m calls non existing sens variable
• 1870 - ft_datatype_sens flags planar gradient data as inconsistent
• 1871 - plotting fails for single precision data
• 1872 - add Jim to the developers list
• 1873 - ft_connectivity_dtf does not have any reference documentation
• 1874 - ft_componentclassification does not make correct use of the preamble and postamble
• 1875 - there are functions that use the ~ output argument, which is incompatible with older MATLAB versions
• 1876 - implement support for the PALS B12 atlas in ft_read_atlas
• 1877 - ft_filetype will recursively check all subfolders
• 1878 - ft_artifact_clip returns a different number of artifacts
• 1879 - ft_plot_vector breaks because it needs iscolumn
• 1880 - ft_componentanalysis method fastica ignores maxNumIterations (and possibly other options)
• 1881 - ft_selectdata_new fails to select frequency limits for coherence data
• 1882 - ft_selectdata_old fails to select frequency limits in freq subfield but not in cohspctrm subfield
• 1883 - the field cfg.debug is not allowed in spike functions
• 1884 - Implement fallback .m files for nan*
• 1885 - make isequaln and isequalwithequalnans the same (former should be preferred since builtin)
• 1886 - implement various performance enhancements
• 1887 - extend ft_connectivityanalysis with measures for time-domain and component data
• 1888 - deployed fieldtrip crashes
• 1889 - trialfun_general does not work on neurosim data, caused by ft_read_header
• 1890 - ft_channelrepair does not seem to handle the new sens fields well
• 1891 - it would be nice if qsubcellfun could evaluate private private functions
• 1892 - configuration tracking and callinfo tracking collide
• 1893 - Is there a standard format for warning IDs?
• 1894 - ft_xxxplot does not work anymore after updating
• 1895 - see Bug 1896
• 1896 - Bug in ft_freqanalysis since yesterday
• 1897 - make a requirements item under the download main menu item
• 1898 - qsubfeval fails if there are spaces in the name of the present working directory or path
• 1901 - changes in units seems to affect SPM
• 1902 - ft_prepare_sourcemodel should use consistent unit handling
• 1903 - ft_removetmsartifact assumes cfg.pulseonset to be a cell array in some places, a double vector in others
• 1904 - clean up the dashboard, remove non-existent test scripts
• 1905 - make a function that translates between /home and h:\
• 1906 - consider implementing ft_evalfun
• 1907 - automatically test the tutorials from the wiki
• 1908 - ensure consistent units for the headmodel functions
• 1909 - lay.label can be row
• 1910 - Problem with converting old style CTF grad
• 1911 - ft_movieplotER called from within ft_databrowser does not open in new figure
• 1912 - SPM8 integration test script crashes on local-spheres model
• 1913 - recompile the ANT libeep mex files on all platforms
• 1914 - implement support for the babySQUID MEG system in Boston
• 1916 - scalingfactor needs to be made faster
• 1917 - provenance with md5sum fails for very large input variables
• 1918 - clarify how data transformations are affecting the sens structure
• 1919 - merge planarchannelset with ft_senslabel
• 1920 - restore the complete svn revision history on the server
• 1921 - re-design ft_prepare_headmodel
• 1922 - extend and test functionality of ft_timelockgrandaverage
• 1923 - implement a eventgui or event2ft interface
• 1925 - surface_nesting.m and ft_headmodel_bemcp.m shell order backwards?
• 1926 - test_ft_prepare_singleshell fails
• 1927 - /data/test/latest/sens/ctf275.mat is outdated, not the latest
• 1928 - the realtime compile script and Makefiles write to the wrong location
• 1929 - update documentation about neighbour structures in template wiki page
• 1930 - update template wiki page with respect to sourcemodels
• 1931 - update template wiki page with respect to headmodels
• 1932 - prepare_mesh_headshape may create NaN pnt values
• 1933 - ft_convert_units crashes with NaN in input
• 1934 - merge patch from googlecode for surface_intersection in branch
• 1935 - extra field: inside after ft_volumereslice
• 1936 - warning .img file couldn't be opened when ft_volumesegment is used
• 1937 - implement job dependencies in qsubfeval
• 1938 - some small improvements to ft_analysispipeline
• 1939 - should ft_selectdata_new modify the output.cfg?
• 1940 - A crash when scaling EEG sensor array
• 1941 - ft_scalpcurrentdensity crashes if elec does not contain (optional) elecpos field
• 1942 - flank detection should look at difference, rather than absolute value of trigger channel
• 1943 - identify channel function in ft_databrowser does not yield correct channel
• 1944 - svn server started sending emails with "Subject: Output from your job 32 "
• 1945 - create function that allows for manual editing of boolean volumes...
• 1946 - the orphan plugin is broken on the wiki
• 1947 - ft_voltype incorrectly detects a biosemi128 elec structure as a volume
• 1948 - ft_datatype cannot detect several vol-structures as volumes
• 1949 - all source code in realtime/bin/win32 needs to be recompiled
• 1950 - trackconfig gets confused with other cfg
• 1951 - some of the test scripts started failing during the bug binge
• 1952 - correct spelling of 'anonimize'
• 1955 - implement native support for the NIRS machine at the DCC
• 1956 - use volumesmooth in place of all calls to spm_smooth in FT code
• 1957 - implement fieldtrip menu option in figures and analysis pipeline
• 1958 - Non-uniform frequency spacing in ft_specest_mtmconvol
• 1959 - ft_senstype doesn't detect the appropriate grad type in comp data
• 1960 - some 'rising' events are not found for NXE data
• 1961 - make an implementation of the buffer client for the arduino
• 1962 - qsubcellfun fails when function name is specified as string
• 1963 - ft_analysispipeline broken since revision 7367
• 1964 - order of ft_preamble calls should be consistent
• 1965 - ft_specest_XXX: add warning when requested timeoi/freqoi don't match with (possible) output
• 1966 - guidelines for the use of uicontrol and ft_uilayout
• 1967 - ft_prepare_vol_sens needs to be updated for simbio
• 1968 - Error in prepare_freq_matrices.m ?
• 1969 - ft_prepare_neighbours should first remove missing channels and then define neighbours rather thean the other way around
• 1970 - inconsistent byte swapping in float32 for communication between Intel and Arduino (endianness)
• 1971 - fix external/mne test script problem due to data not present on path
• 1972 - ft_scalpcurrentdensity should fail when input is MEG data
• 1973 - unbalancing warning might be confusing
• 1974 - twitter tracker on wiki does not update anymore
• 1975 - Get into wikipedia
• 1976 - Inverse solution with one time point and one trial fails
• 1977 - unexpected interaction between masking and the handling of nan values
• 1978 - implement plotting for localspheres headmodels
• 1979 - ft_electroderealign should align elecpos not chanpos
• 1980 - ft_preamble/postamble_debug global variable name is different for preamble vs postable leading to high memory usage
• 1981 - consider implementing a cheby2 filter in ft_preproc_xxxfilter
• 1982 - CalcMD5 does not support input with size > 2^31
• 1983 - ft_prepare_sourcemodel should support cfg.grid.unit
• 1984 - appendfreq should also append cumtapcnt and cumsumctn
• 1985 - should ft_selectdata(_new) also subselect trialinfo, sampleinfo, cumtapcnt, cumsumcnt, etc.
• 1986 - wrong channel alignment by ft_combineplanar and ft_xxxgrandaverage when interpolated channels are present
• 1987 - inconsistency in handling of usercfg in provenance and merging of ft_defaults
• 1988 - vol.mat on ftp/tutorial/* not consistent with each other nor current code.
• 1989 - find external functions that were downloaded from elsewhere and place them in external/misc
• 1990 - something is broken with regards to grad.balance
• 1991 - use callbacks in sourceplot
• 1992 - why no use spm8/canonical/avg152T1.nii instead of spm8/templates/T1.nii?
• 1993 - tissuelabel and tissuename in simbio headmodel
• 1994 - use callbacks in ft_volumerealign
• 1995 - indicate marked fiducials in ft_sourceplot
• 1996 - allow atlas lookup for slice viewmode in ft_sourceplot
• 1997 - Java out of memory error
• 1998 - neuralynx CSC problem due to gaps in the acquisition
• 1999 - merge svn testing and benchmark directory with fieldtrip/test
• 2000 - make a python implementation of fieldtrip
• 2001 - re-think halting behaviour of ft_sourceplot
• 2002 - ft_volumesegment is missing ambles (eg time consumption)
• 2003 - WFU aal ROI_MNI_V4 atlas format not detected by ft_prepare_atlas
• 2004 - ft_connectivityanalysis: improve support for source level frequency domain data
• 2005 - ft_sourceanalysis: improve data handling
• 2006 - ft_prepare_sourcemodel: consider support for atlas-based parcellation
• 2007 - Proposed changes to ft_inverse_beamformer_dics
• 2008 - ft_spiketriggeredspectrum_fft should work with spike input
• 2009 - pinvNx2 function is missing, lmoutrn and lmoutr confusion
• 2010 - CalcMD5 is not compiled for mac 32-bit matlab
• 2011 - bug in nanmean m file (and possibly other nanXXX files?)
• 2012 - ft_sourceinterpolate checks for 'pnt' field, uses 'pos' anyway
• 2013 - review the list of mex files for all platforms
• 2014 - sam beamfomer
• 2015 - defining gradiometer channels in the neuromag306
• 2016 - Choosing lambda in lcmv
• 2017 - CTF segmentation
• 2018 - mvaranalysis does not update ntrl after redefinetrials
• 2019 - sensor fusion in neurmag system
• 2020 - improve mne2grad - sample the leadfield on more points and integrate over them
• 2021 - unit conversion in ft_plot_sens
• 2023 - .nex files not correctly read out
• 2024 - ft_volumelookup cannot create masks based on anatomical labels alone
• 2025 - 'infinite' forward model not working properly
• 2026 - Suggestion for MRI and MEG coregistration (particularly useful for neuromag users)
• 2027 - troubles while reading 4D MEG files in getting the MEG channels
• 2028 - ft_channelselection needs to be reconsidered
• 2030 - improve documentation for installing openmmeeg
• 2031 - fieldtrip menu item is added multiple times
• 2032 - ft_sourceplot: build in check for matching coordsys when using method = 'surface'
• 2033 - implement replacement for signal processing toolbox
• 2034 - Error in ft_topoplotCC
• 2035 - reading of events from NEX gives error if file contains no events
• 2036 - small bug fixes in exporting fiff: fileparts returns dot and dataout does not exist (#1)
• 2038 - bugs in fieldtrip2fiff
• 2039 - Reading *.smr files
• 2040 - nansum fallback behaves incompatible with the nansum mex file
• 2041 - outdated example scripts
• 2042 - ft_electroderealign function does not work for me with method: 'manual' and with method: 'template' & using headshape
• 2043 - ft_connectivityplot missing cfg option
• 2044 - eventtype can contain empty characters that should be removed
• 2045 - spiketriggeredspectrum increases the number of spikes
• 2046 - ft_read_spike on nex file results in spaces in event.type
• 2048 - figure's menubar not updated during 'for' loop
• 2049 - ft_statistics_montecarlo: implement confidence intervals for p-value
• 2050 - visualization functionality, combining different data structures + consistent implementation
• 2051 - ft_math does not work on secondary fields
• 2052 - topoplots' window title now show ft_topoplotTFR when it should in fact be ft_topoplotER
• 2053 - implement roi selection in ft_selectdata
• 2054 - use rollback_provenance consistently when calling a high-level FT function from another
• 2055 - extra fileformat option is missing in documentation of ft_read_mri
• 2056 - ft_defaults only runs once per matlab session
• 2057 - support non-bash shell in qsub
• 2058 - ft_freqstatistics does not output posclusterslabelmat in case there are no significant differences
• 2059 - cfg.channel in ft_topoplotER
• 2060 - cannot read neuralynx events.nev in the absence of LFP channels
• 2061 - ft_timelockanalysis: variance not computed if any period with dof=1
• 2062 - resolve some of the recent regression problems
• 2064 - Synchronization pulses for 4D MEG (Marseille & Glasgow)
• 2065 - ft_databrowser: for a test case, 30s of databrowsing is caused by 20s of plotting text
• 2066 - no channselection in multiplot in interactive mode?
• 2067 - No unit conversion in ft_prepare_headmodel
• 2068 - Brainvision problems
• 2069 - freqstatistics does not respect channel order in data
• 2071 - ft_postamble history disregards multiple data structures
• 2072 - nanmean.mexa64 crashes
• 2074 - ft_spike_plot_raster: trial selection results in sparse raster plot
• 2075 - Event Selection GUI (ft_trialfun_general)
• 2077 - ft_volumerealign should support dragging
• 2078 - ft_singleplotTFR crashes with cfg.interactively='yes' and data cantains NaN
• 2079 - ft_sourceplot with method=surface and input = output from statistics displays the same slice multiple times
• 2080 - without any warning/message ft_volumesegment throws away csf, white and gray when cfg.output also contains brain
• 2081 - ft_combineplanar with combinemethod='svd' should be improved for raw/timelock
• 2082 - ft_datatype_timelock: no requirement for .avg?
• 2083 - ft_prepare_atlas: deprecate this function
• 2084 - ft_sourceanalysis should give warning if crsspctrm is missing
• 2085 - ft_senstype needs to be made faster
• 2086 - ft_databrowser hangs with data output from ft_appenddata
• 2087 - layout file for M3 easycap
• 2088 - ft_multiplot edits labelcmb and throws it away
• 2089 - why does ft_multiplotTFR clear the current figure instead of axis
• 2090 - ft_rejectvisual holds the command-line while browsing trials/channels/summary
• 2091 - simbio seems to be missing for windows
• 2092 - Help Needed for FEM code
• 2093 - NEX file reader errors
• 2094 - loreta missing?
• 2095 - make fieldtrip robust to matlab 2013a changes
• 2096 - implement cifti import/export function
• 2097 - rollback_provenance transforms strings to cells? (ft_math dimord checking faulty)
• 2098 - write FAQ on dmlt mex file problems
• 2099 - ft_preproc_padding fails for padtype mirror
• 2100 - ctf mri version 4.1 is not supported
• 2101 - Provenance very big, makes plotting and executing functions very slow
• 2103 - ft_freqstatistics: when input is rpt_chan_freq_time cfg.avgovertime = 'yes' gives error while monte-carlo+cluster
• 2105 - ft_movieplotER: isolines do not change together with color while 'playing the movie'
• 2106 - ft_rejectvisual: when cfg.mode = 'summary', plotting topographies using the 'trial plotter' results in an error
• 2107 - Source interpollation bug
• 2108 - error_in ft_sourceinterpolate
• 2110 - ft_spiketriggeredaverage doesn't correctly select trials
• 2111 - Problem with ft_prepare_layout
• 2112 - have ft_prepare_neighbours accept electrode file as template
• 2113 - test report e-mail does not work properly anymore
• 2114 - make coordsys and coordinates consistent
• 2115 - make a standard_fem volume conduction model
• 2116 - check and extend the MNI template documentation
• 2117 - add cortical sheet sourcemodels to fieldtrip/template/sourcemodel
• 2118 - inconsistent number of channels in sensor description after ft_freqanalysis
• 2119 - qsubcellfun: allow for flexible matlab version to be used
• 2120 - option to use Nutmeg coreg GUI for fiducial marking and electrode coreg
• 2121 - why are events stored in data.cfg.previous.previous etc?
• 2122 - fucked up channel order in ft_prepare_layout for subselection of channels
• 2123 - ft_checkdata and others: there are some conflicted files on /home/common/fieldtrip
• 2124 - try/catch ME syntax
• 2125 - File not close in read_biosemi_bdf.m
• 2126 - give higher 'affordance' to auto-search box and make the results popup better
• 2127 - ft_sourceplot always outputs "INTERACTIVE MODE SPECIAL"
• 2128 - ft_provenance cfg.trackcallinfo vs. ft_default.trackcallinfo
• 2129 - ft_timelockgrandaverage: provenance is never kept on input
• 2130 - ft_preamble_provenance can't handle large files
• 2131 - enginepool fails to start
• 2132 - confusing warning or enhancement needed in ft_channelrepair?
• 2133 - egi_mff_v2 reading causes global variables to be deleted
• 2134 - ft_pre/postamble_provenance: find alternative for calculating hash
• 2135 - 'forgot password' link is no longer there on wiki
• 2136 - ft_senstype mis-classification
• 2137 - ft_componentanalysis reports a randomseed error on newer versions of matlab
• 2138 - reading of updated atlas from wfu_pickatlas does not work
• 2139 - add cfg.preproc to plotting routines?
• 2140 - discrepancy between trials/time when filtering in-memory trials with mirror padding
• 2141 - $id information does not match in ft_singleplotER
• 2142 - memory issues with runica
• 2143 - store meanvar from runica in output of ft_componentanalysis?
• 2144 - Invalid precision error in loreta2fieldtrip
• 2145 - explain options surfplot
• 2146 - ica cleanup problems with numcomponent < numchannel
• 2147 - debate the meaning of 'once' in warning_once
• 2148 - fixdimord changes dimord chancmb to chan though labelcmb is there
• 2149 - remove the old SAM results from SubjectXX.zip
• 2150 - buffer recording hangs when writing with mobita
• 2151 - MFF might have discontinuous data
• 2153 - Check read_brainvision_eeg.m
• 2154 - Check read_brainvision_eeg.m
• 2155 - consistent use of MATLAB vs Matlab
• 2156 - ft_megplanar.m fails when there is a channel label with less than 3 characters
• 2157 - Fietrip version 8101 is 2.3 GB
• 2158 - strange behaviour of ft_math
• 2159 - ft_plot_vector complains it does not know how to plot in the appropriate color
• 2160 - ft_multiplotER does not support multiple inputs with different time axes
• 2161 - make FAQ "why demean before ICA"
• 2162 - avoid eval and feval in main fieldtrip functions
• 2163 - bug in read_neuralynx_nse function dur to variable record size
• 2165 - automatic figure renaming does not check whether figure name is user specified
• 2166 - dics beamformer with rawtrial='yes' and fixedori='yes' still computes filter per trial
• 2167 - have ft_sourceplot read surface from other than *.mat file
• 2168 - ft_read_headshape is inconsistent with reading from one or multiple freesurfer files
• 2169 - implement support for freesurfer curvature
• 2170 - ft_read_event changed for neuromag
• 2171 - remove deprecated code that has passed its expiration date (THT)
• 2172 - update the keyval into ft_getopt on http://fieldtrip.fcdonders.nl/code_guidelines#varargin_arguments
• 2173 - create a tutorial on animal electrophysiology "burst" data
• 2174 - consider using mex-files for filtering (available on file exchange)
• 2175 - resolve concatenation warning in flattopwin
• 2176 - support real time fMRI for VB17 on Skyra
• 2177 - stylesheet needs some improvements for courier font
• 2178 - prepare_mesh_hexahedral should be able to create meshes of different resolution
• 2179 - ft_singleplotER: call to ft_checkconfig(...,'createsubcfg','preproc') causes crash
• 2180 - reimplement the ft_preamble and postamble
• 2181 - nanstd: segfaults on singles
• 2182 - ft_freqanalysis does not support the method 'mvar'
• 2183 - MNE does not allow lambda to be in percentage (e.g. cfg.mne.lambda = '5%')
• 2184 - settle on convention for upper/lower case method names
• 2185 - enhancement: keep time dimension in ft_sourcegrandaverage.
• 2186 - ft_appendtimelock: some bugs and documentation needs
• 2187 - ft_appendfreq does not give a freq in output
• 2188 - enhancement: implement support for Localite marker positions (eeg-electrodes and tms-coil location)
• 2189 - freqanalysis with cfg.keeptrials='no' keeps cumtapcnt
• 2190 - autosync does not work properly anymore?
• 2191 - ft_selectdata (new vs old) avgoverchan: mean or sum?
• 2192 - should ft_sourceplot in ortho mode produce square pixels (i.e. isotropic image)?
• 2193 - reading of AAL atlas is broken since revision 8179
• 2194 - enhancement: allow ft_databrowser to mark entire trial as artifact with single keystroke
• 2196 - reconsider merging used cfg with ft_default
• 2197 - avgoverrpt support in ft_selectdata_new or ft_freqdescriptives with labelcmb and chancmb
• 2198 - throw an explicit warning by default when cfg options are not used?
• 2199 - remove cfg.transform from ft_sourcedescriptives
• 2200 - explain on page 1 how to get support
• 2201 - data = ft_removetmsartifact(cfg, Trl)
• 2202 - ft_hastoolbox: crash when doing ft_hastoolbox('SPM8UP', 1) ...
• 2203 - font size is too small in ft_databrowser
• 2204 - ft_preprocessing demean with baselinewindow doesn't work
• 2205 - consistent documentation/implementation in ft_dipolefitting
• 2206 - implement bootstrap method for statistics
• 2207 - some files have the "subversion does not use Log" comments in them
• 2208 - implement drop-in replacement function for finv
• 2209 - MATLAB documentation states strmatch is not recommended, use STRNCMP instead
• 2210 - EGI header
• 2211 - data.trial contains only NaN after preprocessing on neuroscan cnt files in a newer version of fieldtrip
• 2212 - reading egi .raw data with no events not possible with ft_read_header
• 2213 - svnsync to sourceforge fails
• 2215 - do not store test data in the svn/git repository
• 2217 - Implicitref not used if its label is part of a label of the other channels
• 2218 - ft_sourceinterpolate does not take 'all' as a parameter
• 2219 - reading 4D header with empty label
• 2220 - demeaning with a baseline and ft_preprocessing does not work
• 2221 - problem plotting two averages at once with ft_multiplotER
• 2223 - update the dokuwiki CMS on the fieldtrip website
• 2224 - cfg.previous fails for ft_selectdata
• 2225 - speed up warning_once
• 2227 - extend ft_redefinetrial with interpolation of missing data, i.e. where the TMS pulse used to be
• 2228 - be consistent with opening new figure windows
• 2229 - Strange results of ft_sourcestatistics
• 2230 - ft_connectivity_granger/csd2transfer: redesign handling of blockwise and blockwise/conditional
• 2231 - old md4 approach for reading 4D data fails
• 2232 - external/gifti.m: cannot handle the label table from caret label files
• 2233 - ft_rejectartifact: fails to execute artifact_xxx since the compat directory has been reorganized
• 2234 - bug binge august 9: reserve a room
• 2235 - ft_denoise_synthetic changes grad labels
• 2236 - update publication list with 2013
• 2237 - rollback_provenance: fails when data structure lacks a cfg-field that is a structure
• 2238 - read in and segment Netstation data
• 2239 - improve the youtube video quality
• 2240 - record the MEG toolkit on video
• 2241 - make a youtube video with the electrophysiology and instrumentation background
• 2242 - make a youtube video that explains the frequency resolution FAQ
• 2243 - make a youtube video introducing the fieldtrip toolbox
• 2244 - make a youtube video explaining the various types of padding
• 2245 - make a youtube video addressing the FAQ on 50Hz line noise
• 2246 - make a welcome video for our youtube channel
• 2247 - there is no correspondence resulting from the modification
• 2248 - error in openmeeg test script due to elecpos
• 2249 - ft_volumesegment does not return .anatomy field anymore
• 2251 - fix the mailman-to-rss conversion on the wiki
• 2252 - documentation for wavelet needs some clarification
• 2253 - properly merge the connectivity and connectivityextended tutorials
• 2254 - ft_topoplotIC produces warning that interactive plotting is not supported
• 2255 - cfg.previous is very large after source statistics slowing matlab workspace managing
• 2256 - ft_componentanalysis with method = 'binica' does not work, also consider implementing 'mexica'?
• 2257 - ft_rejectartifact throws an error when replacing artifact with nans
• 2258 - bug binge: organize one on sept 18
• 2259 - nansum needs to be compiled for win32/64
• 2260 - ft_selectdata_new removes .avg field in timelock data if keeptrials = 'yes'
• 2261 - does svn autosync working fine?
• 2262 - ft_specest_hilbert has a problem with padding
• 2263 - lcmv and rv methods
• 2264 - ft_sourceinterpolate does not work on mne method
• 2265 - cm or mm in ft_prepare_leadfield
• 2266 - Archive Adobe Premiere project for intro and outtro video
• 2267 - examples do not work
• 2268 - reference documentation not updated automatically
• 2269 - ft_rejectartifact does not work for trials with overlapping samples
• 2270 - channel selection does not work in forward and inverse routines
• 2271 - "testOpenMEEGeeg.m" gives error
• 2272 - Cannot use ft_read_header for .cnt files
• 2274 - ft_read_event for neuralynx Events.nev file
• 2275 - Cannot use ft_read_event for .trg files
• 2276 - implement/wrap around neuroconn import
• 2277 - show mask as contours
• 2278 - two test functions for prepare_headmodel
• 2279 - default conductivity values at different inputs of concentricspheres are inconsistent?
• 2280 - defaults for tissue in ft_prepare_headmodel
• 2281 - headmodel localspheres gives an error
• 2282 - browse_multiplotER & browse_movieplotER use depricated function calling
• 2283 - ft_connectivityplot needs a legend in case of multiple inputs
• 2284 - ft_multiplotTFR: working with connectivity data and cfg.refchannel='gui' crashes
• 2285 - ft_appendfreq: no support for frequency structures with labelcmb
• 2286 - implement a working version of eloreta
• 2287 - implement tfce
• 2289 - Filters don't work when doing preprocessing
• 2290 - remove powerpoint slides from wiki
• 2291 - Allow test-scripts to have custom memreq and timreq
• 2292 - replace all occurrences of dhk with tri
• 2293 - correct the computation of ppc1 and ppc2
• 2294 - collect video material from Donders brain stimulation toolkit
• 2295 - peerlist receives no job-information, causing all jobs to be resubmitted after the set 60 seconds
• 2297 - atlas_lookup uses deprecated atlas
• 2298 - nanvar fails at offset of 1e8 in test_nanstat test script
• 2299 - ft_databrowser should support Matlab's data cursor
• 2300 - make side-by-side documentation comparing FT to BrainStorm
• 2301 - documentation and code are inconsistent in powcorr_ortho implementation
• 2302 - add a proper walltime and mem estimate to the execution of the test scripts
• 2304 - ft_databrowser trouble accessing visual artifacts
• 2305 - implement code guideline on usage of function...end
• 2306 - get Haiteng started as developer
• 2307 - ft_dipolefitting
• 2308 - ft_clusterplot does not like ANOVAs (which can only return positive clusters)
• 2310 - allow more anonymous pipeline execution by not storing the time and date
• 2311 - promote example script to tutorial status
• 2312 - ft_databrowser: team up Roemer with Craig to improve the databrowser
• 2313 - issues with chanpos in grad-structure after backprojection of component data
• 2315 - ft_databrowser: add/discuss multicolumn layouts
• 2316 - ft_databrowser crash on Windows 7 (plotting component data)
• 2317 - ICA plots look different in databrowser vs. topoplot
• 2319 - Documentation for ft_definetrial out of date
• 2320 - Interactivity and subplot
• 2321 - mtmwelch - no longer a supported method
• 2322 - the icp function is not compatible with its use in ft_volumerealign
• 2323 - read EDF does not use gain when negative
• 2324 - data.cfg field required for plotting
• 2325 - ft_multiplotER and ft_singleplotER do not plot the ERP/F waveform
• 2326 - document good example mail to the mailinglist
• 2327 - stay consistent with cfg.parameter being mandatory for freq-data
• 2328 - ft_sourcestatistics with cfg.roi yields NaN clusters
• 2329 - ft_selectdata_new
• 2330 - ft_appenddata unnecessarily removes sens information
• 2331 - ft_channelrepair should update grad.tra
• 2332 - add chanposorg and labelorg to grad/elec structures
• 2333 - Bug in ft_read_data
• 2334 - ft_trialfun_general selects wrong events after r8613
• 2336 - read the individual FE mesh and the individual leadfields from BESA
• 2337 - ft_topoplotER calls ft_freqbaseline on frequency data without time axis
• 2338 - revise the openmeeg BEM implementation and ensure it works
• 2339 - consider getting involved in neuralensemble.org
• 2340 - merge sourceanalysisDICS with test_ft_sourceanalysis
• 2341 - recompile the buffer mex file for neuromag_fif support
• 2342 - ft_connectivity_csd2transfer: zigzags
• 2343 - warning_once should check time passed as well as stack trace
• 2344 - Non-Linear axis in ft_singleplotTFR
• 2345 - allow trigger values to be represented either as individual bits or as words
• 2346 - make diagnostic function for source-model/volume-model intersections
• 2347 - ft_headmodel_dipoli uses invalid FID
• 2349 - ft_compute_leadfeld should allow for Nx3 dipole positions for interpolated leadfield model
• 2350 - ensure that geometrical units are dealt with consistently for all headmodels
• 2351 - document the print/warning/error usage in the code guidelines
• 2352 - cfg.statistic in ft_statistics_montecarlo
• 2353 - rename scalingfactor into ft_scalingfactor and move from private to utilities
• 2355 - get rid of the cfg.sourceunits option
• 2356 - get rid of the cfg.units option
• 2357 - split ft_convert_units in a determine and convert function
• 2358 - ft_prepare_sourcemodel has a non-standard way of dealing with the input arguments
• 2359 - ft_prepare_sourcemodel should be extended with cortical sheet manipulation options, like spherify
• 2360 - allow ft_statistics_stats to output t-values for all cases when t-test is used
• 2361 - time axes passed onto preproc() contain nans after adding padding
• 2362 - cfg.toi in ft_freqanalysis
• 2363 - ft_selectdata_new fails on chan_freq data (and possibly other?) when selecting channels
• 2366 - Use consistent terminology in fprintf / warning /error messages
• 2367 - ft_sourceanalysis: output contains source.method, consider removing
• 2368 - openmeeg gives error with windows
• 2369 - the solid_angle mex file crashes with single-precision input data
• 2370 - implement support for reading 3D facial scans in ply format
• 2371 - test_bug70 fails sporadically
• 2373 - provide link to "search the discussion list" at the bottom of each page
• 2374 - update the utilities/private/randomseed function
• 2375 - Problem with MEG localspheres when working in meters
• 2376 - Plotting elec for spherical model fails due to chanpos/elecpos mismatch
• 2377 - elec.tra gets incorrectly scaled after geometrical unit conversion
• 2378 - ft_redefinetrial: does not seem to copy over the last columns of a trl matrix into data.trialinfo
• 2379 - sfactorization_wilson2x2 breaks
• 2380 - openmeeg leadfield has incorrect units
• 2381 - error in ft_sourcestatistics?
• 2382 - tutorial documentation: improve usability
• 2383 - provenance of the mesh is not passed correctly into volume conductor
• 2384 - changelog hs
• 2385 - create 3D easycap elec-files
• 2386 - plot electrodes as disks in ft_plot_sens
• 2387 - ft_prepare_leadfield does not correctly handle units
• 2388 - consider adding support for cytoarchitectonic atlas
• 2389 - 4D-BTi-EEG channels are not recognized with our data
• 2390 - implement support for the XDF data format
• 2391 - ft_read_event version 8859
• 2392 - template directory: remove anatomy/single_subj_T1 ...
• 2393 - add Nietzsche to the name list at the bottom of the page
• 2394 - ft_selectdata (_old and _new) does not deal consistently with selecting 0 trials
• 2395 - lcmv beamformer gives wrong results when precomputed filter is supplied
• 2396 - merge ft_import_surf into ft_read_headshape
• 2397 - merge ft_iso2surf into ft_prepare_mesh
• 2398 - merge the functionality of ft_leadfield_openmeeg into the regular fieldtrip functions
• 2399 - ft_datatype_sens fails as of today (29-nov-2013)
• 2401 - create test script for CTF *hdm file
• 2402 - matlab 2012a does not support optimset in dipole_fit
• 2403 - ft_senstype does not detect brainvision eeg data without elec field
• 2404 - ft_channelrepair returns a grad field which was not present before
• 2405 - channelconnectivity fails on test_bug2404
• 2406 - ft_channelrepair should have method=average
• 2408 - ft_datatype_volume does not specify unit as an optional or required field
• 2410 - isfunction error upon a call to ft_getuserfun
• 2411 - implement matching pursuit decomposition
• 2412 - ft_om_compute_lead function is called but not present in openmeeg
• 2413 - improve support for eye tracker data
• 2414 - Neuralynx headers include unicode characters, which can crash ft_read_neuralynx_interp
• 2415 - Cannot read event data from biosemi_bdf
• 2418 - ft_senstype does not return neuromag306alt
• 2420 - beamformer tutorial test scripts need excessive resources on torque
• 2421 - allow specification of units in ft_dipolesimulation
• 2422 - pos2dim3d needs the statistics toolbox for a simple zscore
• 2424 - ft_prepare_layout from sens rather than from elec/grad
• 2425 - ft_datatype_sens fails on montaged grads
• 2426 - minor but blocking error in ft_eloreta
• 2427 - ft_prepare_layout with cfg.feedback = 'yes' opens two figures
• 2428 - wilson2x2 complains about unequal frequency axis with foilim = [0 Ny]
• 2429 - Individual BEM, Leadfield and Electrode rotatetd
• 2430 - add support for LSF backend
• 2431 - mpi_customized_acticap64 layout can be improved
• 2432 - dataset2files throws error if format is empty
• 2433 - bugzilla sets default severity to 'enhancement'
• 2434 - Suggested further reading: lists with OR instead of AND?
• 2436 - beamforming at the skull
• 2437 - consider using image opening to post-process thresholded map when doing (source) statistics
• 2438 - improve ft_plot_sens for plotting electrodes
• 2439 - improve documentation for ft_determine_coordsys
• 2440 - ft_singleplotTFR fails when plotting anything other than 'powspctrm'
• 2441 - anatomy/template: low res and hi res MRIs are stored with left vs right-handed axes system
• 2442 - ft_determine_coordsys is inconsistent with coordsys='unknown'
• 2443 - ft_multiplotER wants to have cfg.refchannel in powandcsd data, although I want to plot powspctrm
• 2444 - ft_selectdata_new fails on component data
• 2445 - external/stats mex files are missing for 32 bit linux
• 2446 - visual artifact tutorial misses suggested further reading section
• 2447 - plotting tutorial lacks a test function
• 2449 - ft_read_sens produces NaN labels for easycap files
• 2450 - ft_rejectvisual fails on data that is all-zero
• 2451 - Matlab 2013b version bug - interacting with plotting function
• 2454 - Allow 'zeromax' and 'minzero' for cfg.zlim in ft_topoplotTFR and ft_singleplotTFR
• 2455 - ft_sourcestatistics crashes on volume structure in input
• 2456 - ft_volumerealign gives no output
• 2457 - why does connectivityanalysis using 'pdc' suggest to use cfg.granger.channelcmb?
• 2458 - typo in statistics_wrapper
• 2460 - ft_datatype error with two (logical) mask fields
• 2462 - ft_preprocessing crashes when reading brainvision dataset
• 2463 - cfg.channel option leads to unexpected results with various functions due to changes in ft_senstype
• 2464 - ft_selectdata "cfg.foilim" setting is ignored but its use is recommended in the help
• 2465 - document how fieldtrip can help implementing Sandve et al. 2013
• 2466 - MOEGI - mother of all EGI MFF bugs
• 2467 - make test script for TactileStimulusDipolefit
• 2468 - ft_sourcedescriptives can not handle output from beamformer_pcc with keeptrials='yes'
• 2469 - ft_connectivityanalysis with method='powcorr_ortho' does not work with freq data
• 2472 - void* does not work on VC2010
• 2473 - ft_databrowser: crash when using preproc window containing vector more than once
• 2474 - Crash in ft_compute_leadfield because of number types
• 2475 - collect video material from Gottingen workshop
• 2476 - fr_freqanalysis_mvar gets confused with the loadvar due to it being wrapped in ft_freqanalysis
• 2478 - Adapt ft_preamble to detect prior existence of cfg.outputfile and subsequently skip the caller function
• 2479 - timelockstatistics lead to error when averaging across channels
• 2480 - Backward compatibility with TRY/CATCH ME
• 2481 - new FAQ 'how to perform a multiple sessions MEG experiment'
• 2482 - support segmented brainvision data with its own trialfun
• 2483 - ft_selectdata_new: avgovertime = 'yes' removes time field and changes dimord
• 2484 - implement ft_deidentifydata function for anonimization purposes of fieldtrip data structures
• 2486 - provide transition for users from egi_mff version 2 to version 3 file format
• 2487 - revise documentation with respect to dependency on mathworks toolboxes
• 2489 - chantype unknown when reading fif file with only a couple of channels
• 2490 - implement support for synchronizing MEG data with video and/or audio recordings
• 2491 - ft_clusterplot should check if cfg.correctail option was use to warn the proper pvalue
• 2492 - ft_plot_topo does not support transparency mask with values other than 0 or 1
• 2493 - qsubcelfun hangs after around 12 submissions
• 2495 - MEX file error during execution of ft_timelockanalysis
• 2497 - implement test scripts for fieldtrip/external/stats and fieldtrip/external/signal drop-in replacement functions
• 2498 - recompile mex files on win32
• 2499 - ft_senstype problems with 1020 labels
• 2500 - why is cfg.latency in ft_timelockanalysis deprecated?
• 2501 - databrowser displays old events after appending data
• 2502 - ft_freqstatistics requires XXXparameter ormat for parameter names, which is not clear from the documentation
• 2504 - move dccnfilename to utilities
• 2505 - remove symbolic links from svn repository
• 2506 - read_zebris.m
• 2507 - unexpected behaviour of ft_appenddata when appending more than two datasets
• 2508 - make it optional whether dimensions are kept after averaging with ft_selectdata
• 2509 - makeselection_cumtapcnt is causing problems in data without cumtapcnt
• 2510 - ft_statfun_diff throws an error
• 2511 - ft_read_headshape error in line 888 since last change to function
• 2512 - archive the fieldtrip lecture video of Irina in Moskow
• 2513 - check data field consistency through different data type structures
• 2514 - implement kappa truncated-svd for beamformer covariance inverse
• 2515 - duplicate faq on realtime headlocalizer
• 2516 - using ft_sourceinterpolate and ft_sourceplot for 2D, 3D, 4D and 5D data
• 2517 - merge ft_checkdata/fixsource with ft_datatype_source
• 2518 - ensure that component data can be used as input in sourceanalysis, dipolefitting and all other functions
• 2519 - isequalwithequalnans is not recommended, use isequaln instead
• 2520 - ft_checkdata fails on componentanalyzed timelock data
• 2521 - ft_volumerealign: restructure the headshape method
• 2522 - ft_appenddata returns sampleinfo-error when concatenating channels
• 2523 - implement ft_crossfrequencyanalysis function, pipeline and documentation
• 2524 - ft_write_mri (nii output) incorrectly writes non 1mm isotropic data.
• 2525 - ft_read_event only considers event types "input" in eyelink ascii data
• 2527 - ft_sourceplot does not plot color data
• 2528 - ft_math problem with .avg in timelock data
• 2529 - ft_volumerealign: revamp the user interface
• 2530 - qsubget possibly removes error and output log files too soon resulting in qsub sending error mails
• 2531 - surfaceplot made by ft_sourceplot sparing thefrontal lobes
• 2532 - Problem in ft_apply_montage
• 2533 - add cfg.plotselection to only plot those trials present in cfg.trials
• 2534 - add cfg.plotselection to only plot those trials present in cfg.trials
• 2536 - ensure correct double selections in ft_selectdata
• 2537 - update the matlab versions in qsubfeval
• 2538 - update all calls to ft_selectdata_old to use the common (newer) implementation
• 2540 - ft_volumesegment: segmented mri incorrectly inherits units from input mri
• 2541 - ft_interactiverealign: crash when closing the figure
• 2543 - test_tutorial_beamformingextended: figure created with data on disk does not match the figure in the tutorial
• 2544 - ft_sourcegrandaverage error due to field dimord not being detected properly
• 2545 - GUIs loading stuff should use ft_progress 'gui'
• 2546 - ft_selectdata 'avgovertime' does not remove time from the resulting structures dimord
• 2547 - License checkout handling
• 2548 - error in ft_prepare_sourcemodel when 'grid' is not gridlike
• 2549 - test_ft_channelselection fails
• 2550 - ER tutorial says padding is only possible for continuous data
• 2551 - sourcemodel from disk contains many dipoles outside of brain (singleshell)
• 2552 - use consistent naming of figures and titles
• 2553 - no sampleinfo field after applying ft_componentanalysis
• 2554 - ft_appenddata does not copy fsample to the output data structure
• 2555 - Strange shape of Granger spectrum
• 2557 - conceptual flaws in the dftfilter faq
• 2558 - ft_timelockstatistics crashes because of dimord
• 2559 - ft_databrowser crashes on plotting timelock averaged component data
• 2560 - ft_sourceplot: verify correctness of 'ortho' display
• 2561 - ft_selectdata and getdimord
• 2562 - time axes numerical imprecision with ft_redefinetrial overlap option
• 2563 - ft_selectdata (new version) cannot avgoverfreq using alternative parameter names
• 2564 - ft_multiplotTFR: cfg.mastyle = always highlight
• 2565 - record and collect all material for Nijmegen2014 MEG toolkit
• 2566 - ft_topoplotER (presumably topoplot_common) computes its own on-the-fly avg when tl.individual is present
• 2567 - add subfunctions isrow and iscolumn to ft_selectdata
• 2568 - ft_selectdata uses ~ in output variables
• 2569 - windaq data cannot be read on a matlab2013a machine
• 2570 - improve the unit handling in ft_apply_montage
• 2571 - bug in ft_componentanalysis
• 2572 - well, this seems like a fairly easy unit conversion ;)
• 2573 - databrowser cannot plot components since sample info is missing
• 2574 - ft_plot_topo: added imagesc+saturation for saving nicely vectorized topo's
• 2575 - Setting channel types based on labels
• 2577 - improve the svn log messages for autosync updates
• 2578 - extend ft_math with (a-b)/(a+b) and more fancy stuff
• 2579 - ft_source* functions should gracefully deal with cfg.parameter containing either avg.XX or XX
• 2581 - thinkgear2ft.exe cannot connect to the neurosky mindwave event through neurosky thinkgear
• 2582 - improve support for ft_realtime_micromedproxy
• 2583 - sigma_t of Morlet wavelet incorrect in documentation
• 2584 - ft_selectdata: new version does not correctly select trials from a raw data structure
• 2585 - ICA for same data differ even using fixed random seed
• 2586 - monte carlo p-values
• 2587 - follow up on the discussion about data analysis assistance within the DI
• 2588 - ft_databrowser identifies wrong channel in butterfly mode
• 2589 - ft_selectdata detects second dimension of sampleinfo as channels
• 2590 - implement ft_removetemplateartifact function for Tom's TDCS artifacts
• 2592 - fieldtrip/template/anatomy: get improved inflated surfaces
• 2593 - confusion between cfg.numcomponent and cfg.fastica.numOfIC
• 2594 - ft_volumelookup error with row vs column atlas.tissuelabel
• 2595 - make regression test script for EEGLAB dipfit plugin
• 2596 - ft_sourcegrandaverage with cfg.inputfile leads to error by ft_selectdata / ft_preamble
• 2597 - ft_selectdata alphabetizes labels, this leads to wrong leadfield order with ft_prepare_leadfield
• 2598 - Peermaster Mex issue
• 2599 - biosig: mvar functionality missing
• 2600 - slice plot fails when nslices=1
• 2601 - allow user specification of where qsubcellfun maintains it input/output files
• 2602 - document how to deal with differences in mouse head size
• 2603 - make template layout for mouse EEG system
• 2604 - document coordinate system for mouse anatomical models
• 2606 - Problem with ft_timelockstatistics (montecarlo) with avgoverchan = 'yes'
• 2607 - Display HOSTNAME in qsubget
• 2608 - wiki: reduce the height of the banner
• 2609 - ft_sourceplot with cfg.atlas/.roi throws error (line 345)
• 2610 - ft_timelockanalysis fails for component input data
• 2611 - loading dicom series on Windows machine fails
• 2612 - atlas_lookup fails for mouse data
• 2613 - ft_freqanalysis inconvenience with comp+raw
• 2614 - Reference to non-existent field 'dimord'.
• 2615 - ft_analysispipeline added to some tutorials
• 2616 - qsubget will fail if jobs are not in the queue history any more
• 2617 - ft_math, ft_redefinetrial, and dof
• 2618 - qsublist cannot determine pbsids when nr of jobs>999
• 2620 - ft_multiplotER ignores the cfg.showoutline option and always plots it
• 2621 - ft_volumesegment ignores/breaks mri.unit
• 2622 - ft_appenddata typo
• 2623 - Create function to 'reverse parcellate' data, to allow for visualisation at source-level
• 2624 - improve the TMS tutorial
• 2626 - qsubcellfun doesn't tell Matlab that job is done
• 2627 - Possible bug with 'outline' option in ft_singleplotTFR
• 2628 - strsplit not found in Matlab2011b
• 2629 - ensure that all files have the correct line endings (dos/unix)
• 2630 - implement ft_globalmeanfieldpower
• 2631 - Get Tzvetan started with development
• 2632 - Using simbio to create a volume conduction model and to perform source localisation
• 2633 - improve job status handling for qsubcellfun on SGE
• 2634 - ft_rejectcomponent: incorrect elec/grad balancing when comp and data in input
• 2635 - update the mouse eeg documentation with the latest changes in the script
• 2636 - extend ft_electroderealign with automated electrode positioning for 40 electrode mouse grid
• 2637 - *_ouput.mat file not found (yet)
• 2638 - consider adding a microdonation service to the fieldtrip wiki
• 2639 - ft_sourceanalysis and ft_checkdata, possible channel ordering bug?
• 2640 - ft_plot_slice does not draw the intersection with a surface mesh correctly
• 2641 - Error in ft_checkconfig using ft_spiketriggeredspectrum
• 2642 - invalid MEX-file???
• 2643 - ft_sourceinterpolate crashes (Undefined function or variable 'abort')
• 2644 - ft_freqbaseline cannot handle subj_chan_freq_time
• 2645 - ft_timelockanalysis does not deal properly with data containing NaNs
• 2646 - ft_freqanalysis now requires explicit channel input and does not default to 'all'
• 2648 - ft_specest_mtmconvol with padding should allow estimates at edge time bins
• 2649 - implement event writing for BrainVision eeg/vhrd/vmrk
• 2650 - check chanunits data saved on disk
• 2652 - ft_prepare_layout is not keeping provenance correctly
• 2654 - ft_sourceplot functional image scaling trouble
• 2655 - rollback_provenance interferes with configuration tracking
• 2656 - Matlab crashes when calling ft_databrowser in TMS-EEG tutorial
• 2658 - mxSerialize_cpp
• 2661 - unknown variable inputcoord ft_volumelookup
• 2662 - mismatch between the coordinate system in the atlas and the coordinate system in the data in ft_volumelookup
• 2663 - ft_rejectvisual sorting of minimum values
• 2664 - error with comp input into ft_sourceanalysis
• 2665 - ft_selectdata excludes data.fsampleorigwhich is required for maranalysis, due to unknwin dimord,
• 2666 - test_ft_datatype_sens fails because labelorg is not present
• 2667 - test_ft_selectdata fails because old cumsumcnt is an empty matrix 0x1 but new is [] ...
• 2668 - ft_rejectvisual plots non-zero variance as zero
• 2669 - use of 'avg' field with ft_sourceinterpolate
• 2670 - ft_selectdata strips fsampleorig from mvar input data
• 2671 - error when fitting dipole to independent component
• 2672 - Neuromag EEG layout for distribution / documentation
• 2673 - ft_rejectvisual plots all channels
• 2674 - spike functions get errors because ft_preamble_trackconfig
• 2675 - document the Waxholm mouse brain coordinate system
• 2676 - export provenance (data.cfg.previous) to PROV format
• 2677 - consider DRMAA as generic backend for qsub
• 2678 - Delete cfg.correcttail from documentation
• 2680 - ft_timelockanalysis does not compute minperlength correctly
• 2681 - data cursor functionality in ft_databrowser is broken
• 2682 - implement support for the neuroscope file format
• 2683 - test tutorials for Birmingham workshop
• 2684 - MOMEEG - Mother of all combined MEG-EEG bugs
• 2685 - ft_scalpcurrendensity blocks on combined MEG-EEG dataset
• 2686 - make a tutorial using 4D/BTi data
• 2687 - fontsize in ft_multiplotER
• 2688 - typo in ft_multiplotTFR
• 2691 - ICA plotting in databrowser: button "component" instead of "channel"
• 2692 - collect video material from Birmingham workshop
• 2693 - update the wiki to the latest version
• 2694 - toolbar on wiki is broken
• 2695 - update documentation of ft_freqanalysis with method 'mtmconvol'
• 2696 - provide documentation on the applicability of ft_networkanalysis
• 2697 - make documentation and FAQ more consistent
• 2698 - fieldtrip is bugging out eeglab extensions
• 2699 - ft_sourceplot keeps printing 'yes' when clicking around in ortho mode
• 2700 - ft_resampledata: revamp user interface
• 2701 - get Jennifer started as developer
• 2702 - Too many different types in ft_chantype
• 2703 - function pos2transform takes only one input argument but in ft_checkdata is called with 2
• 2704 - potato art expression missing
• 2705 - ft_rejectvisual does not keep channels with cfg.keepchannel='yes'
• 2706 - merge the crosshair plotting
• 2707 - implement ft_volumerealign based on fiducial clicking in 3D skin surface mesh
• 2708 - clarify contrastlim versus colorlim/clim in ft_sourceplot
• 2709 - config/subsref results in: Non-overloaded subscripting can produce only one result
• 2710 - enhancement for ft_databrowser 'next segment' button
• 2711 - ft_math checks wether a field is present, then crashes anyways if it is not
• 2712 - cfg.trl option doesn't seem to work in ft_databrowser
• 2713 - ft_databrowser does not plot labels
• 2714 - ft_databrowser displays black screen under some conditions
• 2715 - ft_math: suggestions for improvement
• 2716 - flowcharts in natmeg preprocessing tutorial need updates
• 2717 - create a FAQ about cfg.lambda
• 2718 - ft_sourceplot refers to ft_prepare_atlas
• 2719 - cfg.trials=[]; in ft_selectdata results in cfg.trials = 'all';
• 2720 - tutorials should start with close all, clear all
• 2721 - mask is not handled correctly in ft_multiplotTFR
• 2722 - maskparameter is not passed along properly in ft_multiplotER
• 2723 - ft_math should support cell input for cfg.parameter
• 2724 - ft_multiplotXX printing in landscape mode should be option, not default
• 2725 - finalise the natmeg eeg-meg tutorials for public usage
• 2726 - ft_math takes very long to compute operations
• 2727 - ft_clusterplot has regression error due to change in r9830
• 2729 - make kurtosis beamformer example script for epilepsy data
• 2730 - ft_sourceplot: on-the-fly surface interpolation works not as expected according to a user
• 2733 - add a drop-in replacement function for stats/zscore
• 2734 - initial CIFTI io tests fail
• 2735 - ft_write_cifti fails for dtseries if there is only a single time point
• 2736 - ft_trialfun_general crashes after reading EDF+ file
• 2737 - ft_resampledata should support downsampling, i.e. without an anti-aliasing filter
• 2738 - is it possible to switch off the autocorrect functionality while typing comments in bugzilla?
• 2739 - Data Alignment issue for ft_sourceplot (ortho mode)
• 2740 - QuikCap 32 10-20 layout
• 2741 - fix cifti indexing issue with missing data on medial wall
• 2742 - prevent power from being removed as 'probabilistic' field
• 2743 - error when calling ft_mvaranalysis (for granger connectivity computation)
• 2744 - in ft_sourcedescriptives source.avg.csdlabel is not consistently updated resulting in an empty cell array
• 2745 - ft_clusterplot cannot plot clusters per time point as shown in the tutorial
• 2746 - loadcnt sometimes behaves weird by trying to jump to a non-integer valued file pointer
• 2747 - subspace projection not applied in beamformer_lcmv with subspace<1, and inconsistent regularization (lambda)
• 2748 - Redundant or unnecessary work in ft_sourceanalysis
• 2749 - ft_source2full fails when dealing with Nvox x Nvox data
• 2751 - remove spam from fieldtrip wiki
• 2753 - Getting started with fNIRS (and fNIRS/EEG)
• 2755 - ft_convert_units ignores grid.resolution
• 2756 - ft_volumerealign crash when plotting (looks for fields not present in mri)
• 2757 - ft_freqanalysis cannot operate on a single channel
• 2758 - ft_prepare_headmodel(cfg) fails with single argument
• 2759 - matlab2014b neighbourplot interactive channel selection does not work properly
• 2760 - databrowser data selection not possible anymore
• 2761 - ft_connectivityanalysis method=corr has time in output
• 2762 - deprecate/revamp prepare_freq_matrices
• 2763 - no data and test script for MNE tutorial
• 2764 - use explicit reshape instead of squeeze
• 2766 - fir_filterdcpadded speed improvement suggestion
• 2767 - improve support for averaged neuroscan fif files
• 2768 - Cannot combine opacity and atlas in ft_sourceplot
• 2769 - make ft_sourceplot and ft_sourceinterpolate behave consistently
• 2770 - eeglab2fieldtrip does not know how to deal with the EEG structure with interpolated channels
• 2771 - revamp the example script about mni based template grids
• 2773 - fix EEG source modelling
• 2774 - OpenMEEG leadfield has erroneous sensor interpolations
• 2775 - ft_electrodrealign does not find function (not in /utilities/private)
• 2776 - ensure correct numbers of power spectral density as returned by ft_freqanalysis, considering the bandwidth
• 2778 - ft_regressconfound potentially copies unwanted fields over from input to output
• 2779 - ft_timelockanalysis should distinguish between trialdimord and avgdimord/vardimord
• 2780 - ft_regressconfound is not reliable in detecting confounds
• 2781 - document how to get started with ecog data
• 2782 - ft_selectdata doesn't keep .trialinfo correctly if 'rpt_chan_time' but with only 1 trial
• 2783 - ft_definetrial doesn't work with timelock data of 'rpt_chan_time' with only 1 trial
• 2784 - Error in ft_mvaranalysis
• 2786 - merge ft_freqgrandaverage with ft_timelockgrandaverage
• 2787 - implement compiled ft_standalone and allow it to be called from qsubcellfun
• 2788 - ignore this bug
• 2789 - ft_checkdata fails in ft_sourceanalysis for TFR with nfreq=1 and ntime=2
• 2790 - ft_connectivityanalysis fails with cfg.trials
• 2791 - ft_checkdata/createdimord should be merged with getdimord
• 2792 - ft_volumerealign does not store provenance correctly
• 2793 - add mini version of spm12 to fieldtrip/external
• 2794 - implement support for the KRISSMEG data format
• 2795 - use new data handling for ft_timelockstatistics, ft_freqstatistics and ft_sourcestatistics
• 2796 - do not use source.avg.xxx in any FieldTrip function and use logical inside
• 2797 - create FAQ on ft_rejectcomponent(cfg,comp) versus ft_rejectcomponent(cfg,comp,data)
• 2798 - create FAQ on ft_rejectcomponent(cfg,comp) versus ft_rejectcomponent(cfg,comp,data)
• 2799 - not cleaning up .hdr file: align_itab2spm and align_ctf2spm
• 2800 - Wrong electrode projection in ft_prepare_vol_sens
• 2801 - calling ft_stratify gives error when too many Curve Fitting Toolbox licenses are used
• 2802 - wiki no longer finds 'help' of each function
• 2803 - major localization differences in two versions of ft_dipolefitting
• 2804 - ft_specest_wavelet: evaluate and incorporate Michael's suggested correction of wavelets
• 2805 - clean up documentation of MEG UK workshop
• 2806 - ft_read_cifti: ask permission to build in support for passing LabelTable info to output for dense-label files
• 2807 - ft_appendtimelock and ft_appendfreq: upgrade these functions
• 2808 - reading the last sample from a neuromag fif file returns 0
• 2809 - ft_freqstatistics produces error when cfg.frequency only has one numeric element
• 2810 - get Luca and Remco started as developers
• 2811 - Problem with reading sfp file with headshape points
• 2812 - Error when running "ft_singleplotTFR"
• 2813 - ft_statfun_diff_itc doesn't create/output a critval
• 2814 - mne tutorial does double realignment and segmentation
• 2815 - ft_warp_apply has missing from its documentation the options 'sn2individual' and 'individual2sn'
• 2817 - bemcp output not 'sensible'
• 2818 - ft_interpolatenan - Specialcase error
• 2819 - Matlab2014b causing error with cfg.artfctdefvalue.zvalue.interactive
• 2820 - ft_sourceinterpolate has missing dim variable declaration
• 2821 - fix the donders/fcdonders email addresses on the mailing list
• 2822 - implement frequency domain MNE
• 2823 - restructure the visualisation tutorial
• 2824 - implement Harmony: Source Reconstruction in the Anatomical Basis of Spherical Harmonics
• 2826 - ft_freqstatistics reference to nonexistend field "inside"
• 2829 - error in clusterstat due to cfg.inside (but related to cfg.dim in ft_freqstatistics)
• 2830 - error in ft_sourcestatistics (spm_bwlabel CONN must be 6, 18 or 26)
• 2831 - add description and summary to both ICA example scripts
• 2832 - cfg.debug=saveonerror fails after rollback_provenance
• 2834 - ft_selectdata/ft_sourceanalysis handling of .crsspctrm when channels have been subselected
• 2835 - bug binge: diagnose and/or fix broken testscripts that were still working recently
• 2836 - allow objects to be saved in the input.mat file without warnings
• 2837 - extend and document electrocorticography (ecog) tools
• 2838 - Sourceanalysis using MNE doesn't use noise covariance
• 2839 - allow spm12 as full alternative to spm8
• 2840 - diagnose and/or fix testscripts that fail to run properly
• 2841 - ft_preprocessing doesn't select channels anymore
• 2842 - ft_sourcedescriptives crashes because ft_datatype_source removed source.avg
• 2843 - ft_sourceinterpolate fails on avg.pow of mne output
• 2844 - ft_preprocessing documentation does not specify padding unit
• 2845 - ft_sourceinterpolate failed to align functional to structural
• 2846 - ft_sourcemovie: restructure the code
• 2847 - weird interaction of ft_sourceanalysis, ft_selectdata(new and old), and prepare_freq_matrices
• 2848 - ft_timelockstatistics doesn't cluster properly with custom neighbours struct
• 2851 - merge freq2timelock and comp2timelock into ft_checkdata
• 2852 - deprecate ft_analysisprotocol
• 2853 - test_ft_sourcenalysis: try-catch statement prevents proper catching of assertion failures
• 2854 - beamformer_dics: fields in output are row vector rather than column
• 2855 - voxel index missing in montecarlo statistics for source level data using wcm or maxsize methods
• 2858 - ft_sourcegrandaverage error due to .pos field
• 2860 - ft_rejectvisual
• 2861 - ft_sourceanalysis keeps data.filter leading to an error in later sourcestatistics
• 2863 - implement plan for server room migration
• 2864 - ft_sourcedescriptives produceses NaNs only (since revision 10263)
• 2865 - ft_read_cifti has problems with .dlabel files that have more than 1 NamedMap
• 2866 - create a FAQ on the effect of variable trial numbers on statistical tests
• 2867 - ft_sourceanalysis keeps filter in output even though cfg.keepfilter = 'no'
• 2869 - Change of data on EOG
• 2870 - precomputed leadfield not detected in sourcemodel and dipolefitting
• 2871 - qsubcellfun does not clean up the PBS output files
• 2872 - implement support for Jinga-Hi JAGA16 system
• 2873 - ft_scalpcurrentdensity does not fully implement Perrin method
• 2874 - ft_sourcegrandaverage of a field that is not 'pow'
• 2875 - ft_sourceanalysis with method 'dics' fails due to non existing field 'label'
• 2876 - ft_singleplotTFR only uses first 64 entries in colormap
• 2877 - implement an ft_deface function
• 2878 - ft_databrowser: redrawing is several times slower for viewmode = vertical than butterfly
• 2879 - ft_sourcestatistics: failure with multiple MNE source results
• 2880 - Identify bad channels with ft_rejectvisual without removing them
• 2881 - Topographic plotting for fNIRS data not possible
• 2882 - Write a tutorial for analysing NIRS data (or NIRS/EEG data)
• 2883 - error('fixme: reorder data fields to match cfg.channel');
• 2884 - Bug in ft_definetrial
• 2885 - collect video material from 2015 Nijmegen MEG toolkit
• 2886 - ft_freqstatistics crashes for freq/freq_time data without channels
• 2887 - return all channels from an EDF file with multiple sampling rates
• 2888 - filetype fcdc_buffer_offline reading problems
• 2889 - enhancement-add optional warning for using default values in ft_getopt
• 2891 - test_ft_componentanalysis fails in dashboard
• 2893 - reading fails for parcellation dconnseries generated by wb_command
• 2894 - Error while reading Neuromag data - no data in this range
• 2895 - help ft_artifact_zvalue suggests using deprecated lnfilter instead of bsfilter
• 2896 - ft_selectdata does not extract selected frequencies
• 2897 - Typo in qsubcellfun
• 2898 - ft_sourcestatistics: low-level machinery does not seem to take into account inside
• 2899 - create template layouts for EGI nets
• 2900 - correction to ft_sourceplot sulci/gyri color
• 2901 - implement a FieldTrip usage tracker
• 2902 - extend EEGLAB integration regression test script
• 2903 - replace the FT findcluster function with the refactored version from LIMO
• 2904 - Implement the threshold free cluster enhancement (TFCE)
• 2905 - improve SMR file format to read spikes and lfps
• 2909 - improve data representation for CIFTI dscalar files
• 2910 - uint64 arithmetic operations can crash Matlab
• 2911 - qsubfeval no longer works since recent update for Octave compatibility (r10458)
• 2912 - ft_platform_supports relies on matlabversion (which it intends to replace)
• 2913 - Typo in ft_getopt.c (mxErrMsgTxt) renders MEX-file invalid in R2015b
• 2914 - NIRS data should support event/trigger reading of AD channels
• 2915 - Field assignment to a non-structure array object is an error in R2015b
• 2916 - negative trlpadding incorrectly disallowed with in-memory data
• 2918 - support reading and writing of BrainVision BVEF electrode position files
• 2919 - interactive functionality ft_prepare_neighbours broken
• 2920 - ft_databrowser: error in custom datatip string function
• 2921 - ft_databrowser: extremely tiny figure title (trial counter)
• 2922 - iscolumn is missing in matlab 2010a
• 2923 - add cfg.trialfun=ft_trialfun_general to tutorials
• 2924 - use neuralynx mex files
• 2925 - ft_specest_mtmconvol - ntaper output missing from a line in documentation
• 2927 - ft_warning: missing ignore field. I.e. who warns the warning?
• 2928 - ft_volumesegment fails on 2015a
• 2930 - Inconsistencies in plotting with recent Matlab versions (Matlab2015a) and previous versions (2012b)
• 2931 - Problem with antialiasing filter in resample
• 2933 - ft_dipolefitting crashes due to todays changes.
• 2934 - keep a number of (external) channels constant when using ft_databrowser on MEG data
• 2935 - ft_artifact_zvalue does not detect jumps
• 2936 - ft_artifact_zvalue: interactive mode is broken in matlab 2013b
• 2938 - Error in mergeconfig (line 30) input.(fn) = default.(fn);
• 2939 - conflict in cfg.headshape.headshape & cfg.individual.headshape in ft_volumerealign & ft_interactiverealign respectively
• 2940 - rescheduling jobs
• 2943 - should the low-level plotting functions modify axis aspects?
• 2944 - add java implementation for openbci and realtime buffer server
• 2945 - ft_prepare_sourcemodel described in old way (?) in warping tutorial
• 2946 - improve exporting of FieldTrip data to BESA for external processing
• 2947 - Not suppressing label-input
• 2950 - ft_rejectvisual returns wrong sampleinfo for rejected trials on concatenated data
• 2951 - implement lagged coherence in ft_connectivityanalysis
• 2952 - build scripts for audio2ft for linux
• 2954 - Bug when reading a subset of channels from an EDF file
• 2955 - implement saturation option in ft_plot_mesh
• 2956 - implement spectral interpolation as alternative to zeroing in DFT filter
• 2957 - revamp functionality to convert between different representation of freq-domain data
• 2958 - ft_connectivity_mim: implement functionality
• 2961 - ft_selectdata: unexpected behavior of ft_selectdata when selecting across time
• 2962 - ft_selectdata: 'rpt_chan_chan_etc' data gets incorrect dimord when 'avgoverrpt' is 'yes'
• 2963 - ft_freqanalysis does not support mirror padding
• 2966 - ft_databrowser not creating cfg.headerfile for EDF
• 2967 - MOVC - mother off all virtual channel bugs
• 2968 - document the interpolation of an atlas onto a MNI-coregistered source model grid
• 2969 - document the use of virtual channels in relation to atlas based ROIs
• 2970 - document how (virtual channel) connectivity can be plotted
• 2971 - ft_sourcestatistics throws away test data, even if specified in cfg.parameter
• 2972 - clusterstat.m crashing with Matlab 2015b
• 2973 - implement getdatfield as replacement for parameterselection
• 2974 - the standard 3D sourcemodel on disk still have the old-style inside/outside definitions
• 2976 - ft_preamble and ft_postamble are not fully supported on matlab 2015b
• 2977 - datset unusable after call of ft_definetrial
• 2978 - "Plot Trial" button on GUI for ft_rejectvisual (summary mode) plots average of all trials instead of the single trial requested
• 2979 - sLORETA
• 2982 - cfg.debug=saveonerror should be supported by all main FT functions
• 2983 - add probabilistic atlas of 22 visual areas
• 2984 - Nonlinear normalisation distortions
• 2985 - Error when using sfg.spmparams.flags
• 2986 - ft_volumerealign fails when realigning mri and headshape in 'cm'
• 2987 - support user specification of analog trigger channels, e.g. in EDF files
• 2988 - have ft_combineplanar also return the orientation in case of method=svd
• 2989 - make FieldTrip compatible with MATLAB 2015b
• 2990 - source and sensor level results do not match: left and right hemispehres are swapped
• 2991 - implement support for the *.besa file format
• 2992 - ft_statfun_correlationT is prone to cross-condition bias when creating the permutation distribution
• 2993 - The ft_electroderealign GUI does not close and save the changes
• 2995 - selection of channels does not work in browse_simpleFFT
• 2996 - filter_with_correction is not up to date in specest
• 2997 - implement saturation in ft_sourceplot for surfaces
• 2998 - implement support for the Tobii eye tracker
• 2999 - implement support for NIRS ISS Imagent data format
• 3000 - saturation masking in ft_plot_matrix/topo leads to grey colors for many colormaps
• 3001 - inside field is not kept in the output structure during the call to ft_math
• 3002 - ft_defaults crashes when checkMultipleToolbox tries to call ft_warning
• 3003 - wiki page (getting started / yokogawa) crashes
• 3004 - making cfg.trialdef.eventtype = '?' the default
• 3005 - ft_rejectvisual: summary mode doesn't work for single trials
• 3006 - document the representation and conversion between sparse and full CSD matrices
• 3007 - provenance handling breaks output of ft_detect_movement
• 3009 - pnt/pos renaming in ft_average_sens breaks SPM functionality
• 3010 - failure of ft_volumesegment
• 3012 - fltpadding doesn't work with data in memory
• 3013 - ensure consistent handling of axis and voxel dimensions when ortho-plotting
• 3014 - ft_prepare_mesh: functionality for calling isosurface on non-boolean volumes
• 3015 - ft_prepare_headmodel: when calling ft_prepare_mesh, cfg.method may not be configurable for the lower-level function
• 3016 - give Simon access to all relevant development tools
• 3018 - ft_connectivity_granger: write documentation page: how NOT to compute Granger causality with spectral factorization techniques
• 3019 - error using fieldtrip functions in a gui.
• 3021 - github and svn not synced to latest version
• 3022 - adding a 'getting started with NIRS data' to importing data section in wiki
• 3023 - layout problem if sensor at (0,0,0)
• 3024 - ft_freqdescriptives: failure to go from fourier output to powspctrm when only 1 channel and one rpt
• 3025 - ft_prepare_sourcemodel: failure with resolution option without sensor description
• 3026 - ft_preprocessing does not reject artifacts identified with ft_rejectartifact
• 3027 - improve support for NIRS data from Homer
• 3028 - ft_appendfreq: does not keep the gradiometer structure
• 3029 - ft_sourceanalysis: failure when using 'dics' as method with fourier input
• 3030 - private/clusterstat: function is unnecessarily very slow when clustering scalar-valued 'pos' vector with triangulated neighbourhood
• 3031 - implement ft_volumereorient
• 3032 - add "restore all" button to GUI for ft_rejectvisual in summary mode
• 3033 - support on-the-fly combined planar data in ft_databrowser and elsewhere
• 3034 - ft_selectdata does not take nanmean avgoverdims
• 3035 - ft_apply_montage incorrectly deals with channels containing NaNs
• 3036 - Multiple dipoles in ft_dipolefitting.m
• 3037 - Inconsistent results with ft_dipolefitting
• 3038 - make consisten use of "unit" instead of "units"
• 3039 - the source model on disk for beamforming_extended is inconsistent with the template
• 3040 - ft_connectivity_mutualinformation is missing
• 3041 - Error in find_innermost_boundary (line 44)
• 3042 - implement support for reading/converting brainstorm cortical surface+labels
• 3043 - allow frequency specific baseline in ft_freqbaseline
• 3044 - problem reading past the end of the file with EDF
• 3045 - tcdf in external/stats is not fully compatible with its counterpart in matlab R2015b
• 3047 - update Brain Connectivity Toolbox to latest version
• 3048 - randomseed functionality was removed from ft_statistics_montecarlo in 2013. why?
• 3049 - migrate from svn to github
• 3050 - implement support for the SensoMotoric Instruments (SMI) eye tracker
• 3052 - ft_appendsource: function does not work
• 3053 - script that ran on MatlabR2013a won't run on MatlabR2015b - home version
• 3054 - implement DOG as alternative to Morlet
• 3055 - ft_prepare_headmodel 'dipoli' output does not contain the vol.mat field
• 3056 - lcmv beamformer source solution mismatch topography
• 3057 - lcmv beamformer source solution mismatch topography
• 3058 - error using cross-correlations ft_spike_xcorr
• 3059 - implement, extend, and document ECoG/sEEG visualization tools
• 3060 - ANT EEProbe: new files not supported
• 3061 - implement support for output files from structure.io sensor 3D scanner
• 3062 - ft_spike_maketrials
• 3063 - build support for Nihon Koden M00 data files
• 3064 - rollback_provenance in ft_multiplotER breaks trial selection
• 3065 - version number and provenance need to be updated to reflect svn->github migration
• 3066 - reimplement the dashboard for github
• 3068 - ft_warning crashes when stack contains > 63 character name
• 3069 - both website and bugzilla have been very slow and unresponsive recently
• 3070 - reducerank default is not optimal for MEG HPI coils
• 3071 - ft_version leaves excessive tmp files
• 3072 - Document (on the wiki) how balancing coefficients are accounted for in the forward computation
• 3073 - correct computation of coh and plv fails with fourier input
• 3074 - Unable to plot component topography Matlab 2015b: "Error using surf X, Y, Z, cannot be complex"
• 3075 - Can't use cfg.inputfile and cfg.outputfile commands
• 3077 - nargin seems to be both a variable and a function in ft_rejectcomponent
• 3078 - ft_sourceanalysis error precomputed grid.filter
• 3079 - ensure consistent handling of figure titles
• 3081 - ft_volumerealign error due to pnt/pos
• 3082 - ft_statfun_indepsamplesregrT does not correct df's for multiple independent variables
• 3084 - ft_connectivityanalysis with cfg.method='psi' fails
• 3085 - ft_multiplotTFR plots channel labels on top of data matrices, rather than above
• 3086 - ft_analysispipeline gives weird result on anonimized tutorial data
• 3087 - running ERF clusterstats tutorial results in quite different plots from wiki
• 3088 - ft_volumerealign shuts down Matlab when f key is pressed
• 3089 - implement dipole fitting for combined magnetometer and planar gradiometer data
• 3090 - ft_volumerealign: intensity sliders fall outside the figure window
• 3091 - merge the two versions of matlablt2010b
• 3092 - recognize label and unit size for micromed data
• 3093 - ft_artifact_zvalue>redraw_cb looks for cfg.datafile instead of the input data
• 3094 - point for discussion: warning about p-value confidence intervals in ft_statistics_montecarlo
• 3095 - ft_convert_coordsys fails without spm on the path
• 3096 - make a graphical channel selection
• 3097 - create a figure handle output in ft_plot_dipole
• 3098 - noisy figure output using ft_sourceplot
• 3099 - support multiple buffers in buffer.exe stand-alone application
• 3100 - Aerospace Blockset matlab toolbox interfere with built-in function "exist.m"
• 3101 - implement support for the TMSi poly5 format
• 3102 - ft_connectivityanalysis for power correlations (cfg.method = 'powcorr')
• 3103 - ft_sourceanalysis asks for .avg and .trial on same object
• 3104 - some workshop wiki pages are down
• 3106 - openmeeg computation fails for MEG
• 3107 - ft_volumerealign problem with scalp.pos / scalp.pnt
• 3108 - Field Trip 20160415 dpss function impairment
• 3109 - ft_combineplanar does not work for trials containing one bad planar gradient chaannel
• 3110 - ft_redefinetrial does not smoothly pass on structure fields when input data is comp
• 3111 - Hilbert on broadband signal
• 3112 - kiel workshop issues - connectivity tutorial
• 3113 - kiel workshop issues - torso MRI
• 3114 - kiel workshop issues - FEM slow
• 3115 - kiel workshop issues - BEM failed
• 3116 - kiel workshop issues - OpenMEEG failed
• 3117 - kiel workshop issues - refine failed
• 3118 - ft_artifact_zvalue give an error with button press using mouse but keyboard works fine
• 3119 - fitting 2 moving dipoles with constr.sequential = 1 probably wrong
• 3120 - ft_apply_montage breaks on different trial-lengths
• 3121 - ft_databrowser channel color changes when identifying channels in viewmode = butterfly
• 3123 - ft_databrowser keyboard command queue is erratic
• 3124 - ft_sourceanalysis does not select multiple frequencies with cfg.foilim
• 3125 - ft_electroderealign with method='fiducial' does not work properly for me
• 3126 - implement support for the NeurOne EEG file format
• 3127 - implement a pipeline for MEG source reconstruction if no MRI is available
• 3128 - incorrect dimord after ft_connectivityanalysis
• 3129 - appendstruct doesn't run
• 3130 - the whole http://www.fieldtriptoolbox.org/ wiki is down
• 3131 - ft_getopt.mexw64 missing
• 3133 - make an example page that demonstrates SSVEP/SSAEP analysis
• 3134 - ft_singleplotTFR 'ismatrix' function is missing
• 3135 - ft_channelselection selects channels it shouldn't because wild card is added
• 3137 - ft_databrowser: upper and lower channels outside of plotting area when cfg.viewmode='vertical'
• 3138 - improve support for R2016b
• 3139 - improve support for R2016a
• 3140 - ft_electroderealign method fiducial asks elecpos
• 3141 - extend ft_defacevolume to deface (headshape) meshes, e.g. those from the 3D scanner
• 3142 - add coordsys field consistently to more data-objects
• 3143 - ft_prepare_neighbours error with unexpected channel unit
• 3144 - ft_checkdata_sens returns error when using MEG structs that worked fine last week
• 3145 - ft_nargin between two versions of fieldtrip
• 3146 - translate vlim and hlim in multiplot to ylim and xlim
• 3147 - interp_gridded is broken
• 3148 - test_old_ft_sourceanalysis_lcmv fails because biomag2010 data is missing
• 3149 - ft_prepare_mesh/ft_prepare_headmodel fails in tutorial
• 3150 - critical value for indepsamplesT
• 3151 - round(true) fails on R2014b
• 3152 - Undefined function 'mvnrnd' for input arguments of type 'double'.
• 3153 - ft_statfun_pooledT fails on 2015b (Field assignment to a non-structure array object), works on 2015a
• 3154 - Elekta MEG channel selection broken
• 3155 - ft_channelselection returns "Empty cell array" when senstype is neuromag306_combined
• 3156 - add 10-20 model-based electrode placement code to ft_electrodeplacement
• 3157 - implement square coils in ft_plot_sens for elekta
• 3158 - ft_datatype: new 'pointcloud' datatype clashes with source datatype
• 3159 - some test scripts don't specify a correct memory or wall time requirement
• 3160 - ft_sourceanalysis cannot deal with larger .grad structure than data
• 3161 - Add support for cross-spectrum to ft_freqdescriptives
• 3162 - beamformer noise estimation on rank-deficient covariance
• 3163 - error in pos2dim - can't index with NaNs
• 3164 - ft_combineplanar returns wrong channel labels (with neuromag data)
• 3165 - ft_prepare_layout doesn't work anymore with integer coordinates
• 3166 - Bug with eep_trg
• 3167 - New problems in ft_plot_sens
• 3168 - Include Maxfilter functionality
• 3169 - spectrogram power does not match with signal amplitude
• 3171 - spm12 not installed
• 3173 - ft_checkdata fails if mesh doesn't have a .tri field
• 3174 - problems aligning CT and MRI using ft_volumerealign
• 3175 - ft_hastoolbox('spm',1): SPM toolbox not installed
• 3176 - ft_electroderealign problems with cfg.headshape.pnt and .pos
• 3177 - ft_electroderealign expects field headshape.tri
• 3178 - error in preparing FEM head model for standard MRI
• 3179 - merge read_layout between cosmo and fieldtrip
• 3180 - uicontrol is not supported on headless servers for ft_qualitycheck
• 3181 - Reading in of oxy3 files asks for optodetemplate for each trial
• 3182 - check averaging and keeptrials in freqanalysis+freqdescriptives
• 3183 - cfg.outputfile saves default variable names that are difficult to guess
• 3184 - getdimord fails on pcc output
• 3185 - incompatibility of ft_realtime_headlocalizer and new CTF hardware electronics
• 3186 - compat/matlablt2010b is not consistent
• 3187 - matlab version specific behavior of cfg-tracking (cleanup)
• 3188 - ft_connectivityanalysis inconsistent output for powcorr_ortho
• 3189 - Version: R2013b , please run ft_databrowser(cfg,ic_data) to find the bug
• 3190 - ft_sourceparcellate's handling of ft_sourceinterpolate's output for atlases
• 3191 - Love Laws & Outlaws: Indoo Seth
• 3192 - Colorspecification for ft_plot_mesh does not allow spelled out colors
• 3193 - ft_artifact_eog fltpadding default introduces NaNs that avoid filtering
• 3194 - prepare_mesh_hexahedral uses .pnt instead of .pos
• 3195 - make a fast implementation of inside/outside detection of source model points in a FEM volume conduction model of the head
• 3196 - prepare_mesh_tetrahedral is missing for SIMBIO tetrahedral meshes
• 3197 - matlab version dependent unpredictable failure of qsubfeval
• 3198 - add the sample number as extra channel for openbci
• 3199 - tracker fails because java JVM not available
• 3200 - grad structure not correctly updated after ICA for Elekta neuromag data
• 3201 - ft_read_header and/or ft_read_sens cannot get elec and grad information
• 3202 - improve support for Tucker Davis Technologies (TDT) files
• 3203 - ft_headmodel_localspheres incompatible with spatial projectors ?
• 3204 - ft_inside_vol reverted to older version
• 3205 - Expand ft_eletroderealign with the functionality of inward/outward shifting of electrode positions.
• 3206 - Tissue confusion in BEM headmodel tutorial
• 3207 - support reading annotations from an EDF+ file
• 3208 - visualize electrode to headshape distance with red/blue circle projection onto scalp
• 3209 - ft_surfacerealign does not follow coding standards
• 3210 - implement a fieldtrip realtime buffer client in node js
• 3211 - ft_sourceinterpolate: failure to reshape funparameter data into cubic shape + retainment of pos
• 3212 - ft_connectivityanalysis with source data (pcc) in input, failure to correctly reshape the output
• 3213 - document the audio and video of the Marseille connectivity workshop
• 3214 - ft_selectdata fails to select trials from freq due to unsupported cumtapcnt
• 3215 - support method=nan for channelrepair
• 3216 - DFT filter is not applied for multiple harmonics, if different numbers samples are needed to fit the full cycle
• 3217 - implement width and gwidth both as vectors in ft_specest_wavelet
• 3218 - ft_rejectvisual recalculates metric after each trial when data contains NaNs
• 3219 - ft_rejectartifact with reject='nan' ignores trials that are entirely marked as artifact
• 3220 - ft_componentanalysis doesn't accept NaNs in the data
• 3222 - point to natmeg documentation and video's
• 3223 - ft_databrowser sets ylim to [NaN NaN] when first trial consists entirely of NaNs
• 3224 - :Size inputs error must be integers: error in non-parametric spectral factorization of partial directed coherence
• 3225 - there are two copies of ft_channelselection
• 3226 - ft_preprocessing gives error "Reference to non-existent field 'checkmaxfilter'."
• 3227 - ft_datatype_source chokes on 'rawtrial' source level data with filters kept
• 3228 - ft_volumesegment: implement dartel as an alternative way for segmentation
• 3229 - ft_apply_montage generates NaN elec.chanpos
• 3230 - Push buttons in ft_anonimizedata don't work
• 3231 - Problems with plotting montaged grads in ft_plot_sens
• 3233 - openGL related issues after last software upgrade of DCCN cluster
• 3234 - Bug in ft_crossfrequencyanalysis
• 3235 - improve ft_volumereslice
• 3237 - Can Fieldtrip test data used with dccnpath be made available?
• 3238 - improve support for partial artifact handling using NaNs
• 3240 - Please clarify openmeeg opening web browser behaviour
• 3241 - improve the dashboard batch test scripts and resolve some regression errors
• 3242 - ensure that all ft_plot_xxx functions have an example in their help
• 3243 - cannot compile "peer" code using Makefile on OSX
• 3244 - modules should remain stand-alone
• 3245 - we should have a CTF151 layout with the fancy helmet
• 3246 - colormap editor is not supported in ft_sourceplot with method=ortho
• 3247 - ft_plot_slice does not add slices to existing figure
• 3248 - ft_plot_sens does not allow to specify the colors of the electrodes
• 3249 - we should add the ctf151 helmet layout to the wiki
• 3250 - the lambda option in the various beamformer source analysis methods needs to be better documented
• 3251 - default conversion into 'cm'
• 3252 - hpos and vpos are used in two different ways
• 3253 - Integrate TSSS toolbox and SSS-beamformer in FT
• 3255 - align_ctf2spm does not support spm12
• 3256 - output of ft_componentanalysis should be timelock+comp when input is timelock
• 3257 - ft_sourceanalysis: MNE with frequency domain data + lambda parameter does not use lambda
• 3258 - Compilation of MEX files for Octave
• 3259 - ft_headmovement passes empty array to kmeans and crashes
• 3260 - inconsistent surface/cortex colors
• 3261 - ft_multiplotTFR with maskstyle = 'saturation' with non-evenly spaced frequency bands shows incorrect axis labels
• 3262 - external/fileexchange functions (by extension, FieldTrip?) not considered free software by GNU Octave community
• 3264 - ft_math does not work on raw data structures
• 3265 - support FT buffer on win64
• 3266 - mesh smoothing
• 3267 - ft_redefinetrial incorrectly claims trialinfo cannot be combined
• 3268 - make a consistent interface to the functions that return spherical meshes
• 3269 - OCTAVE: fixname crashes with empty string input
• 3270 - support common filter approach with dics coherence with a refdip
• 3271 - mni-warped sourcemodel .inside contains skull not brain
• 3272 - ft_volumesegment should show tissue volumes
• 3273 - implement realtime interface to gtec by means of gNEEDaccess
• 3275 - allow sEEG (i.e. not ECoG but depth electrodes) to be visualized with ft_sourceplot
• 3276 - ft_electrodeplacement should not show the "scan" option when a single input is given
• 3277 - speed up ft_statfun_actvsblT
• 3278 - Bug in ft_networkanalysis with parameter 'assortativity'
• 3279 - cfg.selectfeature doesnt work in ft_databrowser
• 3280 - electrode locations are not read from CTF *.ds res4 file
• 3281 - implement ft2audio
• 3282 - which fails as system command on windows for openmeeg
• 3283 - Values of variables in tutorial "Preprocessing and analysis of spike-train data" are not reproducible
• 3284 - regression tests failing for older MATLAB versions
• 3285 - how to keep information about the montage and/or referencing that is applied to data
• 3286 - bioimage suite electrodes are displaced
• 3287 - revise the implementation of the ft_append functions
• 3288 - SPM12 mex files fail with Matlab 2017a
• 3289 - write mesh vista with anisotropy conductivity tensor on windows
• 3290 - When compiling for x64 on windows using VS2015 there are linker errors with pthreadVC2.lib
• 3291 - pass showcallinfo recursively to lower-level functions
• 3292 - use ft_getopt instead of old "isfield" style
• 3293 - ft_estimate_units estimates units of iEEG electrodes incorrectly
• 3294 - Virus warning when unzipping fieldtrip-20170503
• 3296 - trial selection fails in ft_multiplotER (and possibly ft_multiplotTFR)
• 3297 - reading triggers from CTF275 data from the new acquisition computer fails
• 3299 - the output of "find" is always positive integers
• 3300 - Plot negativity upwards
• 3301 - padding is not executed when the padding interval is shorter than the trial's length
• 3302 - Dipole fitting of combined MEG/EEG data Tutorial needs some corrections
• 3303 - Dipole fitting of combined MEG/EEG data Tutorial
• 3304 - consolidate the handling of coordsys
• 3305 - ft_channelselection, wrong selection when channel names are mixed with wildcards
• 3306 - implement an interface for the openbci gangion board
• 3308 - Generic syntax description with funname
• 3309 - Warning concerning short-circuit operations in Octave
• 3310 - Spurious display with upper case warning states
• 3311 - Commit aa3e7f2 seems to break the function ft_preproc_polyremoval.m
• 3312 - Use gammaln instead of lgamma in betapdf.m
• 3313 - make a function for anatomical image homogeneity correction
• 3314 - isequalwithequalnans is not recommended. Use ISEQUALN instead.
• 3315 - ft_filetype's check of MATLAB header is too strict for Octave
• 3317 - ft_singleplotTFR and ft_multiplotTFR show useless warnings
• 3318 - implement support for the 16-channel OpenBCI cyton board
• 3319 - Mesh tissues were ordered according to input, now alphabetical
• 3320 - ft_volumesegment returns too many tissues for spm12 new segment
• 3323 - HTML elements with ft_warning in command line mode
• 3324 - ft_warning and backtrace
• 3325 - Proposed enhancement to coloring of sensors/electrodes in ft_plot_sens
• 3326 - problem with ft_warning
• 3327 - BUG in http://www.fieldtriptoolbox.org/example/fixing_a_missing_sensor
• 3328 - error with new notification system
• 3331 - functions names in @cell from cellfunction folder cause issues with MATLAB tables
• 3332 - File Not found: missing images on ICA tutorials (easy to fix)
• 3334 - create ft_appendlayout
• 3335 - ft_version not found
• 3336 - get rid of confusing stack trace of ft_errror
• 3337 - implement ft_artifact_nan
• 3338 - ft_redefinetrial returns incorrectly nan-padded data
• 3339 - it would be nice if trialinfo could be a table rather than a numeric array
• 3340 - fiducial clicking is similar to electrode clicking and should become shared code
• 3341 - the cfg.method between the different ft_xxxrealign should become consistent for 'interactive' and 'fiducial'
• 3342 - why does ft_freqbaseline normalize trials using the trial-specific baseline instead of the average baseline?
• 3343 - ft_senstype, and ft_senslabel in particular, do not work reliably on iEEG data
• 3344 - ft_preprocessing error with g.tec files
• 3345 - the multi, single and topoplotting functions should use ft_selectdata
• 3346 - keeptrials in ft_timelockanalysis should not output avg/var/dof
• 3347 - ft_databrowser and ft_rejectvisual should use private/chanscale_common for scaling
• 3348 - the comment (COMNT) should be updated when using the hotkeys in multiplot/topoplot
• 3349 - Octave fails running ft_defaults due to using non-functional form of ft_warning
• 3352 - MATLAB compatibility with narginchk/nargoutchk
• 3353 - using ft_sourceparcellate fails for max, min and maxabs methods fail if a tissue in the atlas is not found in the source,
• 3354 - sampleinfo should be updated after using ft_selectdata to make a latency selection on raw or timelocked data.
• 3355 - ft_timelockanalysis redfines begsampl and endsampl
• 3357 - padding for spectral interpolation should be removed from ft_specest_hilbert
• 3358 - ft_multiplotTFR fails for non-standard dimord
• 3359 - plotting of bivariate data needs to be tested
• 3361 - highlight symbol is not correct in topoplot
• 3362 - ft_math with biosemi64.lay in data changes channel order
• 3363 - getdimord warning and cfg.comment not working in ft_topoplotIC
• 3364 - ft_warning returns incorrect warning state if you change something
• 3365 - invalid spm_bwlabel mex mac file under matlab2017b
• 3366 - implement REST re-referencing for EEG data
• 3367 - ft_datatype qualifies a mesh structure as 'source+mesh'
• 3369 - implement a elekta neuromag fif log file reader
• 3370 - Interactive use of ft_topoplotER and subplots
• 3371 - OS High Sierra seems to make ft_selectdata (and possibly other functions) get stuck in a loop
• 3372 - ft_scalpcurrentdensity returns error with eeg data
• 3373 - implement neuromag electrode file format reading and writing
• 3374 - implement neuromag quaternion transformation
• 3375 - support visualization of realistic head and dewar models for ft_realtime_headlocalizer
• 3376 - nanmean crashes after Windows update
• 3377 - lambda parameter in beamformer tutorial exercise 6
• 3378 - ft_singleplotTFR: mask is set to all ones
• 3379 - ft_redefinetrial fails on overlapping trials
• 3381 - host a copy of the wiki and ftp server in China
• 3382 - translate some of the documentation to Chinese
• 3383 - provide closed captions for the video lectures
• 3384 - provide Chinese subtitles for some of the video lectures
• 3386 - masking in singleplotTFR does not to work anymore (but does in version of july 2016)
• 3387 - ft_fetch_sens does not fetch the tra field
• 3388 - implement auto-appending for Elekta fif files
• 3389 - extend ft_qualitycheck for Elekta data
• 3390 - implement an ft_groupqualitycheck function
• 3391 - ft_sourcestatistics documents cfg.roi and cfg.atlas
• 3393 - ft_sourceplot cannot deal with trialaveraged data following ft_selectdata
• 3394 - imotions timestamps are not accurate enough
• 3395 - implement decimation to approximately 1Hz
• 3396 - add columns to read imotions markers from
• 3397 - ft_timelockgrandaverage (and perhaps freq) should give error when no cfg is provided
• 3398 - improve ft_prepare_layout when only few electrodes are included
• 3399 - ft_appenddata does not keep the .fsample field
• 3400 - ft_realtime_headlocalizer does not work in the MEG-LAB
• 3401 - ft_regressconfound produces p-values between 0 and 2
• 3402 - external/gifti mexfiles presumably not compatible with matlab v2017+
• 3403 - ft_artifact_threshold should support partial artifacts
• 3404 - ft_apply_montage makes up (missing) channels
• 3406 - durations events imotions not correct
• 3407 - imotion files can have spaces in column name
• 3408 - make a youtube video that explains how to use the Structure Sensor
• 3409 - ft_databrowser does not work
• 3411 - create a template set of meshes for EEG, using the NYhead
• 3412 - imotions2fieldtrip fixtime = 'squash' not robust for missing values
• 3413 - MUSIC computation doesn't account for inside vs. outside elements of leadfield
• 3414 - tutorial on ECoG analysis not working, issue with ft_timelockbaseline
• 3415 - implement conversion between Ledalab and FieldTrip
• 3416 - problem in ft_channelcombination
• 3419 - ft_sourceanalysis with precomputed leadfields spends almost all its time in ft_checkconfig>checksizefun
• 3420 - implement Pearson's correlation in ft_statistics_stats
• 3422 - archive the video lectures of the 2018 Nijmegen MEG toolkit
• 3426 - general cleanup and bookkeeping at the end ft_scalpcurrentdensity
• 3427 - ft_spike_redefinetrial mentioned in documentation of ft_datatype_spike
• 3428 - TimeStampPerSample or TimestampPerSecond in ft_spike_maketrials?
• 3430 - applying ft_appenddata to concatenate epochs from different blocks corrupts data
• 3431 - Inconsistent documentation "Computing the phases of spikes relative to the ongoing LFP"
• 3432 - Bibliography of references missing in spike tutorial documentation
• 3433 - implement ft_respiration
• 3434 - Virtual Channel reconstruction with sloreta
• 3435 - Syntax error using vol2mesh
• 3436 - Legend bug
• 3437 - ft_selectdata breaks on double latency parameters
• 3438 - improve support for SKANECT files
• 3442 - Repeated calls to ft_prepare_vol_sens/sb_transfer by functions in the simbio FEM-model pipeline
• 3443 - coherence
• 3444 - ft_topoplotIC data check error
• 3445 - magnes 3600 issue with reference coil locations in file
• 3446 - collect video material from 2018 Nijmegen MEG toolkit
• 3447 - Implement regularization in reduced subspace as discussed at BIOMAG
• 3448 - dft filter (freq) increases the spectral power (freq) rather than decrease it
• 3449 - FT filtfilt function masks the MATLAB filtfilt function
• 3450 - DBS artifact removal functionality
• 3451 - DBS artifact removal functionality
• 3452 - Wrong number of selected trials output in ft_redefinetrial
• 3453 - expose the number of iterations in concentric sphere model for EEG
• 3454 - Function in NIRS tutotial 'ft_nirs_transform_ODs' cannot be found because the path is not added
• 3455 - Reading EDF breaks on syntax errors and more
• 3456 - Oblique way of dealing with trial-definition in ft_appendspike
• 3458 - padding in ft_specest_mtmconvol
• 3459 - ft_rejectvisual plots all channels and trials
• 3460 - Parcellated network analysis cannot be plotted
• 3461 - problem with ft_sourcestatistics when using output of ft_sourcegrandaverage
• 3462 - ft_sourcestatistics fails on output from ft_sourcegrandaverage
• 3463 - ft_sourcestatistics does FDR correction wrong
• 3464 - ft_volumenormalise suppresses further warnings
• 3465 - ft_spiketriggeredspectrum_convol default taper doesn't match documentation
• 3466 - explore cluster statistics
• 3467 - ft_spike_plot_raster goes not use correct latency
• 3468 - ft_selectdata forgets to select .trial field of spiketrial data, when selecting trials
• 3469 - unclear use of ft_spiketriggeredspectrum_stat
• 3470 - ft_spiketriggeredinterpolation needs continuous raw spike data, but should be able to deal with two inputs isntead: LFP and spike events
• 3471 - ft_statfun_actvsblT only for freq data?
• 3472 - SEM in error bars incorrect in ft_spike_plot_raster?
• 3473 - Extent ft_prepare_mesh to create individualised meshes on the basis of templates and measurements
• 3474 - eeglab2fieldtrip function needs to be updated with more fields
• 3475 - ft_plot_sens wont plot labels of a linear array of electrodes
• 3476 - ft_multiplot_ER/ ft_singleplot_ER linestyle error